Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004509.1

Orthogroup ID

OG0001404

Physical Location & Seq

Genomic Coordinates Reverse (-)

101650 .. 105705

Gene Structure 4056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004509.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

atgagcaatccagctcatgctcttcatgaagaagaagatgaccaaggcgaggtttttctcgatgaagcagacattgtcggtgaaattgcagtagatgaagaagatcttcctgatgcagacaatgaagttgatgagcttgatgattccatacacatatttactggtcatagcgacgaactatacgccgttgtatgcagcccgacagacactactttggttgcaacagggggtaaagatgacagagggtttctttggaagattggacacggagattgggcttttgagcttcaaggtcataaggattctgtttctagcttagcatttagtactgatggacagttgctagcatctggaagcttggatggaatcatccaaatttgggatatagcatcaggaaatctaaaatgtactttagaaggtcctggtgggggaattgagtggatcaagtggcatcctagaggtcatgtggttttggctggttcagaagactctgcagtttggatgtggaatgctgacaatggttcctatcttaatttattttctggtcatggtggtagagtgagttgtggtgactttacccctgatggaaaaacaatctgcactggttctgctgatacaactttgagaatatggaatccaaaaagtggcgagagcattcatgtggtacaaggtcacccataccatactaccggattgacatgtttgacaataagttctgattcaactttagctgttactggttctgaagatggttctgtctatattgtaaacataacaactggaaaggttgttagttccctggtttcacatttagattcagttgaatgtatcgggcttgcaccaagctccccttgggctgcaactggaggtatggataagaagcttataatttgggacttgcagcattcattgccccgttgtacctgcgaacatgaggatggagtgacatgtttgacatggctgggcacatccaggtatctagcaacaggctgtatggatgggaaggttcggttatgggatagtctctctggtgattgcgtaagaaccttgaatgggcacaatgagcccattcagtctctctctgtatctgccaaccaagagttccttgtttcagtatctactgatggaactgcccgagtttttgagttacatgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

385

Amino Acids

41.29

Weight (kDa)

4.45

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71840
fragaria_vesca	FvH4_2g12470 FvH4_2g12470 FvH4_2g12470 FvH4_2g12470 FvH4_2g12470 FvH4_5g22350 FvH4_5g22350 FvH4_5g22350
malus_domestica	MD02G1272000.v1.1 MD07G1041000.v1.1
prunus_persica	Prupe.8G049100_v2.0.a1
pyrus_communis	pycom02g23260 pycom07g02840
rosa_chinensis	RchiOBHm_Chr2g0090611 RchiOBHm_Chr6g0272901 RchiOBHm_Chr7g0210071
rosa_laevigata	RLG00000003067 RLG00000013656 RLG00000033627 RLG00000036778
rosa_multiflora	Rmu_sc0004509.1_g000030 Rmu_sc0008713.1_g000025 Rmu_sc0008781.1_g000006
rosa_roxburghii	Rroxscaffold_1G00044090 Rroxscaffold_3G00248630 Rroxscaffold_7G00195930
rosa_rugosa	Rorug06G0070800 Rorug06G0070800 Rorug06G0070900 Rorug06G0071000 Rorug07G0118200 Rorug07G0118300 Rorug07G0118400 Rorug07G0163000 Rorug07G0163000 Rorug07G0163100
rosa_samantha	Rh2AG361700 Rh3DG184200 Rh5CG229800 Rh6AG187000 Rh6CG158700 Rh6CG189700 Rh6DG181100 Rh7AG251900 Rh7BG246600 Rh7CG268900 Rh7DG258900 Rh7DG441200
rosa_wichuraiana	Rw4G008120 Rw6G016190 Rw6G016260 Rw7G021400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	887
Acc36I	ACCTGC	1 cut(s)	932
AccB7I	CCANNNNNTGG	1 cut(s)	644
AclWI	GGATC	1 cut(s)	449
AcsI	RAATTY	1 cut(s)	375
AcuI	CTGAAG	1 cut(s)	765
AfaI	GTAC	4 cut(s)	328, 409, 666, 922
AfiI	CCNNNNNNNGG	5 cut(s)	49, 379, 428, 644, 1053
AflIII	ACRYGT	2 cut(s)	698, 947
AgsI	TTSAA	4 cut(s)	290, 723, 824, 1051
AjnI	CCWGG	3 cut(s)	421, 798, 971
AjuI	GAANNNNNNNTTGG	2 cut(s)	1085, 1117
AluBI	AGCT	8 cut(s)	14, 136, 286, 315, 357, 731, 846, 883
AluI	AGCT	8 cut(s)	14, 136, 286, 315, 357, 731, 846, 883
Alw26I	GTCTC	2 cut(s)	1028, 1080
AlwI	GGATC	1 cut(s)	449
Ama87I	CYCGRG	1 cut(s)	1134
ApeKI	GCWGC	3 cut(s)	195, 857, 901
ApoI	RAATTY	1 cut(s)	375
Asp700I	GAANNNNTTC	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	419
AsuHPI	GGTGA	4 cut(s)	92, 581, 665, 1043
AsuNHI	GCTAGC	1 cut(s)	343
AvaI	CYCGRG	1 cut(s)	1134
AvaII	GGWCC	1 cut(s)	419
BaeGI	GKGCMC	2 cut(s)	968, 1059
BanII	GRGCYC	1 cut(s)	1068
BbsI	GAAGAC	1 cut(s)	492
BbvI	GCAGC	3 cut(s)	207, 844, 913
BccI	CCATC	7 cut(s)	326, 356, 578, 743, 932, 992, 1118
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	3 cut(s)	423, 800, 973
BcoDI	GTCTC	2 cut(s)	1028, 1080
BfaI	CTAG	4 cut(s)	312, 344, 456, 980
BfmI	CTRYAG	1 cut(s)	492
BfuAI	ACCTGC	1 cut(s)	932
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	3 cut(s)	196, 858, 902
BlpI	GCTNAGC	1 cut(s)	316
BlsI	GCNGC	3 cut(s)	197, 859, 903
BmcAI	AGTACT	1 cut(s)	328
Bme1390I	CCNGG	3 cut(s)	423, 800, 973
Bme18I	GGWCC	1 cut(s)	419
BmeT110I	CYCGRG	1 cut(s)	1134
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	1 cut(s)	523
BmrFI	CCNGG	3 cut(s)	423, 800, 973
BmsI	GCATC	4 cut(s)	103, 356, 398, 460
BmtI	GCTAGC	1 cut(s)	347
BpiI	GAAGAC	1 cut(s)	492
BpmI	CTGGAG	1 cut(s)	885
Bpu1102I	GCTNAGC	1 cut(s)	316
BsaJI	CCNNGG	3 cut(s)	43, 798, 851
BsaWI	WCCGGW	1 cut(s)	689
Bsc4I	CCNNNNNNNGG	5 cut(s)	49, 379, 428, 644, 1053
Bse1I	ACTGG	5 cut(s)	166, 607, 742, 784, 868
Bse3DI	GCAATG	1 cut(s)	908
BseBI	CCWGG	3 cut(s)	423, 800, 973
BseDI	CCNNGG	3 cut(s)	43, 798, 851
BseGI	GGATG	7 cut(s)	367, 369, 451, 507, 943, 968, 1003
BseLI	CCNNNNNNNGG	5 cut(s)	49, 379, 428, 644, 1053
BseMI	GCAATG	1 cut(s)	908
BseNI	ACTGG	5 cut(s)	166, 607, 742, 784, 868
BseSI	GKGCMC	2 cut(s)	968, 1059
BseXI	GCAGC	3 cut(s)	207, 844, 913
BseYI	CCCAGC	1 cut(s)	961
BsgI	GTGCAG	1 cut(s)	583
BsiHKCI	CYCGRG	1 cut(s)	1134
BsiSI	CCGG	1 cut(s)	690
BslFI	GGGAC	1 cut(s)	908
BslI	CCNNNNNNNGG	5 cut(s)	49, 379, 428, 644, 1053
BsmAI	GTCTC	2 cut(s)	1028, 1080
BsmFI	GGGAC	1 cut(s)	908
BsmI	GAATGC	3 cut(s)	514, 654, 904
BsoBI	CYCGRG	1 cut(s)	1134
Bsp1286I	GDGCHC	3 cut(s)	968, 1059, 1068
Bsp143I	GATC	2 cut(s)	103, 441
Bsp1720I	GCTNAGC	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	523
BspMAI	CTGCAG	1 cut(s)	496
BspMI	ACCTGC	1 cut(s)	932
BspOI	GCTAGC	1 cut(s)	347
BspPI	GGATC	1 cut(s)	449
BspQI	GCTCTTC	1 cut(s)	27
BsrDI	GCAATG	1 cut(s)	908
BsrI	ACTGG	5 cut(s)	166, 607, 742, 784, 868
BssECI	CCNNGG	3 cut(s)	43, 798, 851
BssMI	GATC	2 cut(s)	103, 441
BssT1I	CCWWGG	2 cut(s)	43, 851
Bst2UI	CCWGG	3 cut(s)	423, 800, 973
Bst4CI	ACNGT	1 cut(s)	339
Bst6I	CTCTTC	1 cut(s)	27
BstAPI	GCANNNNNTGC	1 cut(s)	910
BstC8I	GCNNGC	2 cut(s)	345, 837
BstDEI	CTNAG	1 cut(s)	316
BstEII	GGTNACC	1 cut(s)	671
BstF5I	GGATG	7 cut(s)	367, 369, 451, 507, 943, 968, 1003
BstKTI	GATC	2 cut(s)	106, 444
BstMAI	GTCTC	2 cut(s)	1028, 1080
BstMBI	GATC	2 cut(s)	103, 441
BstMWI	GCNNNNNNNGC	2 cut(s)	910, 1063
BstNI	CCWGG	3 cut(s)	423, 800, 973
BstNSI	RCATGY	2 cut(s)	702, 951
BstPI	GGTNACC	1 cut(s)	671
BstSCI	CCNGG	3 cut(s)	421, 798, 971
BstSFI	CTRYAG	1 cut(s)	492
BstSLI	GKGCMC	2 cut(s)	968, 1059
BstV1I	GCAGC	3 cut(s)	207, 844, 913
BstV2I	GAAGAC	1 cut(s)	492
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BtsCI	GGATG	7 cut(s)	367, 369, 451, 507, 943, 968, 1003
BtsIMutI	CAGTG	1 cut(s)	600
BveI	ACCTGC	1 cut(s)	932
Cac8I	GCNNGC	2 cut(s)	345, 837
CciI	TCATGA	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	419
Csp6I	GTAC	4 cut(s)	327, 408, 665, 921
CviQI	GTAC	4 cut(s)	327, 408, 665, 921
DdeI	CTNAG	1 cut(s)	316
DpnI	GATC	2 cut(s)	105, 443
DpnII	GATC	2 cut(s)	103, 441
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	43, 851
Eco24I	GRGCYC	1 cut(s)	1068
Eco47I	GGWCC	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	765
Eco88I	CYCGRG	1 cut(s)	1134
Eco91I	GGTNACC	1 cut(s)	671
EcoO109I	RGGNCCY	1 cut(s)	419
EcoO65I	GGTNACC	1 cut(s)	671
EcoRII	CCWGG	3 cut(s)	421, 798, 971
EcoT14I	CCWWGG	2 cut(s)	43, 851
EcoT38I	GRGCYC	1 cut(s)	1068
ErhI	CCWWGG	2 cut(s)	43, 851
FalI	AAGNNNNNCTT	6 cut(s)	90, 122, 835, 867, 1089, 1121
FaqI	GGGAC	1 cut(s)	908
Fnu4HI	GCNGC	3 cut(s)	196, 858, 902
FokI	GGATG	7 cut(s)	356, 374, 438, 514, 950, 955, 1010
FriOI	GRGCYC	1 cut(s)	1068
Fsp4HI	GCNGC	3 cut(s)	196, 858, 902
FspBI	CTAG	4 cut(s)	312, 344, 456, 980
GluI	GCNGC	3 cut(s)	196, 858, 902
GsaI	CCCAGC	1 cut(s)	965
GsuI	CTGGAG	1 cut(s)	885
HapII	CCGG	1 cut(s)	690
HindIII	AAGCTT	2 cut(s)	355, 881
HinfI	GANTC	7 cut(s)	143, 302, 366, 488, 634, 719, 815
HpaII	CCGG	1 cut(s)	690
HphI	GGTGA	4 cut(s)	92, 581, 665, 1043
Hpy166II	GTNNAC	1 cut(s)	769
Hpy188I	TCNGA	3 cut(s)	484, 718, 745
Hpy188III	TCNNGA	5 cut(s)	26, 59, 110, 351, 393
Hpy8I	GTNNAC	1 cut(s)	769
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	2 cut(s)	410, 997
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4V	TGCA	9 cut(s)	89, 116, 195, 221, 494, 600, 839, 860, 901
HpyF10VI	GCNNNNNNNGC	2 cut(s)	910, 1063
HpyF3I	CTNAG	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	103, 441
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	851
Lsp1109I	GCAGC	3 cut(s)	207, 844, 913
LweI	GCATC	4 cut(s)	103, 356, 398, 460
MaeI	CTAG	4 cut(s)	312, 344, 456, 980
MaeIII	GTNAC	5 cut(s)	569, 671, 733, 943, 1146
MalI	GATC	2 cut(s)	105, 443
MboI	GATC	2 cut(s)	103, 441
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	3 cut(s)	968, 1059, 1068
MluCI	AATT	5 cut(s)	84, 375, 432, 532, 888
MlyI	GAGTC	1 cut(s)	482
MnlI	CCTC	5 cut(s)	43, 236, 452, 860, 928
MroXI	GAANNNNTTC	1 cut(s)	105
MseI	TTAA	1 cut(s)	531
MslI	CAYNNNNRTG	2 cut(s)	659, 936
MspI	CCGG	1 cut(s)	690
MspR9I	CCNGG	3 cut(s)	423, 800, 973
Mva1269I	GAATGC	3 cut(s)	514, 654, 904
MvaI	CCWGG	3 cut(s)	423, 800, 973
MwoI	GCNNNNNNNGC	2 cut(s)	910, 1063
NdeII	GATC	2 cut(s)	103, 441
NheI	GCTAGC	1 cut(s)	343
NlaIV	GGNNCC	1 cut(s)	523
NmuCI	GTSAC	3 cut(s)	569, 671, 943
NspI	RCATGY	2 cut(s)	702, 951
PagI	TCATGA	1 cut(s)	25
PciI	ACATGT	2 cut(s)	698, 947
PciSI	GCTCTTC	1 cut(s)	27
PctI	GAATGC	3 cut(s)	514, 654, 904
PdmI	GAANNNNTTC	1 cut(s)	105
PfeI	GAWTC	6 cut(s)	143, 302, 366, 634, 719, 815
PflFI	GACNNNGTC	1 cut(s)	74
PflMI	CCANNNNNTGG	1 cut(s)	644
PkrI	GCNGC	3 cut(s)	197, 859, 903
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
PpuMI	RGGWCCY	1 cut(s)	419
PscI	ACATGT	2 cut(s)	698, 947
PsiI	TTATAA	1 cut(s)	887
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	3 cut(s)	421, 798, 971
PspEI	GGTNACC	1 cut(s)	671
PspFI	CCCAGC	1 cut(s)	961
PspGI	CCWGG	3 cut(s)	421, 798, 971
PspN4I	GGNNCC	1 cut(s)	523
PspPI	GGNCC	1 cut(s)	419
PspPPI	RGGWCCY	1 cut(s)	419
PstI	CTGCAG	1 cut(s)	496
PsuI	RGATCY	1 cut(s)	103
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	4 cut(s)	328, 409, 666, 922
RsaNI	GTAC	4 cut(s)	327, 408, 665, 921
RseI	CAYNNNNRTG	2 cut(s)	659, 936
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	3 cut(s)	196, 858, 902
Sau3AI	GATC	2 cut(s)	103, 441
Sau96I	GGNCC	1 cut(s)	419
ScaI	AGTACT	1 cut(s)	328
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	3 cut(s)	423, 800, 973
SduI	GDGCHC	3 cut(s)	968, 1059, 1068
SfaNI	GCATC	4 cut(s)	103, 356, 398, 460
SfcI	CTRYAG	1 cut(s)	492
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	2 cut(s)	659, 936
Sse9I	AATT	5 cut(s)	84, 375, 432, 532, 888
SspMI	CTAG	4 cut(s)	312, 344, 456, 980
StyD4I	CCNGG	3 cut(s)	421, 798, 971
StyI	CCWWGG	2 cut(s)	43, 851
TaaI	ACNGT	1 cut(s)	339
TaqI	TCGA	1 cut(s)	60
TasI	AATT	5 cut(s)	84, 375, 432, 532, 888
TatI	WGTACW	2 cut(s)	326, 407
TfiI	GAWTC	6 cut(s)	143, 302, 366, 634, 719, 815
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TscAI	CASTG	1 cut(s)	607
TseFI	GTSAC	3 cut(s)	569, 671, 943
TseI	GCWGC	3 cut(s)	195, 857, 901
Tsp45I	GTSAC	3 cut(s)	569, 671, 943
TspDTI	ATGAA	7 cut(s)	14, 42, 78, 111, 138, 647, 897
TspGWI	ACGGA	1 cut(s)	282
TspRI	CASTG	1 cut(s)	607
Tth111I	GACNNNGTC	1 cut(s)	74
Van91I	CCANNNNNTGG	1 cut(s)	644
VpaK11BI	GGWCC	1 cut(s)	419
XapI	RAATTY	1 cut(s)	375
XceI	RCATGY	2 cut(s)	702, 951
XcmI	CCANNNNNNNNNTGG	1 cut(s)	849
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	4 cut(s)	312, 344, 456, 980
ZrmI	AGTACT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.