Rh6DG181100

Angio-associated migratory cell

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001404
Physical Location & Seq
Reverse (-)
32020254 .. 32024938
4685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG181100.1

Sequence Viewer

Length: 873 bp
ATGAGCAATCCAGGTCATGTTGTTCATGAAGAAGAAGAAGATGATGACCAAGGCGAGGTTTACATTGATGAAGCTGACATCCTTAATGAAGTCAATTTCGATGAGGAAGATCTTCCTGATGCAGACGACCAAGTTGTTGATGAGCCTGATGATTCTATGCATACATTTACTGGTCATACGGGTGAACTTTATACAGTTGTCTGCAGTCCGACAGATCCAGTGTTAGTTGCAACAGGGGGTGGAGATGACAGAGGGTTTCTTTGGAAGATTGGACAAGGAGATTGGGCTTCTGAGCTCCAAGGCCATAAGGATTCTGTTTCTAGTTTAGCATTTAGTACTGATGGACGGTTGCTTGCATCTGGAAGCTTGGATGGAATTATTCAAATTTGGGATATAACATCAGCAAATCTTAAAAGCACTCTTGAAGGTCCTGGAGGGGGCATTGAGTGGGTCAGGTGGCATCCTAGAGGGCATCTGGTCTTGGCTGGTTCGGAGGACTCTACAGTTTGGATGTGGAATGGCGACAAAGGTTCCTATCTTCAATTGTTTTCAGGGCATGGTGGTAGCGTGACTTGTGGTGATTTTACCCCCGATGGTAAAACAATCTGCACTGGTTCTAATGATGCAAGTTTGAGAATATGGAACCCAAAAAGTGGAGAGAACATTCATGTGGTACAAGGTCATCCTTACCATTCTGCAGGGTTGACATGCTTGGCAATAAGCTCTGATTCAACTCTAGCTGTTACTGGTTCTGAAGATGGCTCTGTCCATATTGTAAATATAACTACCGGAAAGGTATGCTTTTTTTGTTCCTATATTGTTGGAAGGGATTATCGGTTGTTAGTTCCCTGGTTTCACATATTTAAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

290

Amino Acids

31.42

Weight (kDa)

4.43

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 51 - 141 7.6e-17 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 52 - 215 6.5e-30 WDR3 first beta-propeller domain
Beta-prop_SCAP PF24017 53 - 134 5.1e-06 SCAP Beta-propeller
Beta-prop_THOC3 PF25174 53 - 266 1.3e-35 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 53 - 173 1e-07 WDR36/Utp21 first beta-propeller
WD40_Gbeta PF25391 56 - 260 2.5e-21 G protein beta WD-40 repeat protein
Beta-prop_EML PF23409 57 - 259 1.3e-13 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR75_1st PF23869 58 - 162 1.7e-07 WD repeat-containing protein 75 first beta-propeller
WD40_WDHD1_1st PF24817 60 - 141 3.5e-09 WDHD1 first WD40 domain
NBCH_WD40 PF20426 63 - 136 5.4e-07 Neurobeachin beta propeller domain
WD40_Prp19 PF24814 66 - 258 5.9e-30 Prp19 WD40 domain
WDR55 PF24796 68 - 262 9.8e-16 WDR55
WD40_CDC20-Fz PF24807 88 - 266 1.6e-21 CDC20/Fizzy WD40 domain
Beta-prop_WDR19_1st PF23389 93 - 225 7.5e-07 WDR19 first beta-propeller
Beta-prop_TEP1_2nd PF25047 96 - 190 7e-11 TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 97 - 137 4.1e-06 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_2nd PF25172 98 - 215 3.2e-18 WDR3 second beta-propeller domain
WD40 PF00400 98 - 131 5.1e-11 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 99 - 166 3.9e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR5 PF25175 99 - 266 1.3e-40 WDR5 beta-propeller domain
Beta-prop_Aladin PF25460 103 - 173 1.1e-06 Aladin seven-bladed propeller
Beta-prop_WDR90_POC16_2nd PF23393 118 - 260 1.4e-06 WDR90/POC16, second beta-propeller
EIF3I PF24805 142 - 226 3.4e-11 EIF3I
Beta-prop_CAF1B_HIR1 PF24105 151 - 225 7.7e-07 CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st PF24817 151 - 229 1.7e-08 WDHD1 first WD40 domain
Beta-prop_EML_2 PF23414 153 - 262 4e-11 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_HPS5 PF23756 160 - 266 4.9e-06 HPS5 beta-propeller
WD40 PF00400 178 - 215 1.3e-08 WD domain, G-beta repeat
Beta-prop_TEP1_2nd PF25047 184 - 265 7.8e-09 TEP-1 second beta-propeller
WD40 PF00400 220 - 258 2.4e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 653
AclWI GGATC 1 cut(s) 209
AcsI RAATTY 1 cut(s) 384
AcuI CTGAAG 1 cut(s) 774
AfaI GTAC 2 cut(s) 337, 675
AfiI CCNNNNNNNGG 3 cut(s) 55, 437, 653
AgsI TTSAA 4 cut(s) 383, 425, 542, 732
AjnI CCWGG 3 cut(s) 10, 430, 848
AluBI AGCT 5 cut(s) 74, 295, 366, 723, 740
AluI AGCT 5 cut(s) 74, 295, 366, 723, 740
Alw21I GWGCWC 1 cut(s) 297
AlwI GGATC 1 cut(s) 209
AoxI GGCC 1 cut(s) 301
ApoI RAATTY 1 cut(s) 384
Asp700I GAANNNNTTC 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 428
AsuHPI GGTGA 2 cut(s) 194, 590
AvaII GGWCC 1 cut(s) 428
BanII GRGCYC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 297
BccI CCATC 4 cut(s) 335, 365, 587, 752
BciT130I CCWGG 3 cut(s) 12, 432, 850
BfaI CTAG 3 cut(s) 321, 465, 737
BfmI CTRYAG 3 cut(s) 202, 501, 696
BglII AGATCT 1 cut(s) 109
BmcAI AGTACT 1 cut(s) 337
Bme1390I CCNGG 3 cut(s) 12, 432, 850
Bme18I GGWCC 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 2 cut(s) 532, 644
BmrFI CCNGG 3 cut(s) 12, 432, 850
BmsI GCATC 5 cut(s) 109, 365, 469, 481, 613
BpmI CTGGAG 1 cut(s) 453
BsaJI CCNNGG 3 cut(s) 49, 298, 848
BsaWI WCCGGW 1 cut(s) 788
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 437, 653
Bse1I ACTGG 4 cut(s) 175, 218, 616, 751
BseBI CCWGG 3 cut(s) 12, 432, 850
BseDI CCNNGG 3 cut(s) 49, 298, 848
BseGI GGATG 5 cut(s) 78, 376, 460, 516, 682
BseLI CCNNNNNNNGG 3 cut(s) 55, 437, 653
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 4 cut(s) 175, 218, 616, 751
BsgI GTGCAG 1 cut(s) 592
BshFI GGCC 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 1 cut(s) 789
BslI CCNNNNNNNGG 3 cut(s) 55, 437, 653
BsnI GGCC 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 2 cut(s) 109, 214
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 283
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 2 cut(s) 532, 644
BspMAI CTGCAG 2 cut(s) 206, 700
BspPI GGATC 1 cut(s) 209
BsrI ACTGG 4 cut(s) 175, 218, 616, 751
BssECI CCNNGG 3 cut(s) 49, 298, 848
BssMI GATC 2 cut(s) 109, 214
BssT1I CCWWGG 2 cut(s) 49, 298
Bst2UI CCWGG 3 cut(s) 12, 432, 850
Bst4CI ACNGT 3 cut(s) 196, 348, 505
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 5 cut(s) 78, 376, 460, 516, 682
BstKTI GATC 2 cut(s) 112, 217
BstMBI GATC 2 cut(s) 109, 214
BstNI CCWGG 3 cut(s) 12, 432, 850
BstNSI RCATGY 1 cut(s) 711
BstSCI CCNGG 3 cut(s) 10, 430, 848
BstSFI CTRYAG 3 cut(s) 202, 501, 696
BstX2I RGATCY 2 cut(s) 109, 214
BstYI RGATCY 2 cut(s) 109, 214
BsuRI GGCC 1 cut(s) 303
BtsCI GGATG 5 cut(s) 78, 376, 460, 516, 682
BtsIMutI CAGTG 2 cut(s) 225, 609
Cac8I GCNNGC 1 cut(s) 354
CciI TCATGA 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 428
Csp6I GTAC 2 cut(s) 336, 674
CviAII CATG 5 cut(s) 17, 26, 557, 668, 708
CviQI GTAC 2 cut(s) 336, 674
DdeI CTNAG 1 cut(s) 291
DpnI GATC 2 cut(s) 111, 216
DpnII GATC 2 cut(s) 109, 214
DraI TTTAAA 1 cut(s) 865
Ecl136II GAGCTC 1 cut(s) 295
Eco130I CCWWGG 2 cut(s) 49, 298
Eco24I GRGCYC 1 cut(s) 297
Eco47I GGWCC 1 cut(s) 428
Eco53kI GAGCTC 1 cut(s) 295
Eco57I CTGAAG 1 cut(s) 774
EcoICRI GAGCTC 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 428
EcoRII CCWGG 3 cut(s) 10, 430, 848
EcoT14I CCWWGG 2 cut(s) 49, 298
EcoT22I ATGCAT 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 297
ErhI CCWWGG 2 cut(s) 49, 298
FaeI CATG 5 cut(s) 20, 29, 560, 671, 711
FalI AAGNNNNNCTT 2 cut(s) 785, 817
FatI CATG 5 cut(s) 16, 25, 556, 667, 707
FokI GGATG 5 cut(s) 65, 383, 447, 523, 669
FriOI GRGCYC 1 cut(s) 297
FspBI CTAG 3 cut(s) 321, 465, 737
GsuI CTGGAG 1 cut(s) 453
HaeIII GGCC 1 cut(s) 303
HapII CCGG 1 cut(s) 789
Hin1II CATG 5 cut(s) 20, 29, 560, 671, 711
HincII GTYRAC 1 cut(s) 705
HindII GTYRAC 1 cut(s) 705
HindIII AAGCTT 1 cut(s) 364
HinfI GANTC 4 cut(s) 152, 311, 497, 728
HpaII CCGG 1 cut(s) 789
HphI GGTGA 2 cut(s) 194, 590
Hpy166II GTNNAC 3 cut(s) 61, 185, 705
Hpy188I TCNGA 5 cut(s) 210, 292, 493, 727, 754
Hpy188III TCNNGA 4 cut(s) 26, 116, 360, 422
Hpy8I GTNNAC 3 cut(s) 61, 185, 705
HpyAV CCTTC 2 cut(s) 419, 819
HpyCH4III ACNGT 3 cut(s) 196, 348, 505
HpyCH4V TGCA 8 cut(s) 122, 160, 204, 230, 356, 609, 626, 698
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 5 cut(s) 20, 29, 560, 671, 711
Kzo9I GATC 2 cut(s) 109, 214
LmnI GCTCC 1 cut(s) 300
LweI GCATC 5 cut(s) 109, 365, 469, 481, 613
MaeI CTAG 3 cut(s) 321, 465, 737
MaeIII GTNAC 2 cut(s) 568, 742
MalI GATC 2 cut(s) 111, 216
MboI GATC 2 cut(s) 109, 214
MboII GAAGA 9 cut(s) 41, 44, 47, 50, 104, 119, 277, 530, 767
MfeI CAATTG 1 cut(s) 542
MflI RGATCY 2 cut(s) 109, 214
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 4 cut(s) 94, 375, 384, 542
MlyI GAGTC 1 cut(s) 491
MmeI TCCRAC 2 cut(s) 233, 802
MnlI CCTC 6 cut(s) 49, 97, 245, 428, 461, 487
Mph1103I ATGCAT 1 cut(s) 162
MroXI GAANNNNTTC 1 cut(s) 111
MseI TTAA 3 cut(s) 84, 411, 864
MslI CAYNNNNRTG 2 cut(s) 180, 668
MspI CCGG 1 cut(s) 789
MspR9I CCNGG 3 cut(s) 12, 432, 850
MunI CAATTG 1 cut(s) 542
MvaI CCWGG 3 cut(s) 12, 432, 850
NdeII GATC 2 cut(s) 109, 214
NlaIII CATG 5 cut(s) 20, 29, 560, 671, 711
NlaIV GGNNCC 2 cut(s) 532, 644
NmuCI GTSAC 1 cut(s) 568
NsiI ATGCAT 1 cut(s) 162
NspI RCATGY 1 cut(s) 711
PagI TCATGA 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 3 cut(s) 152, 311, 728
PflMI CCANNNNNTGG 1 cut(s) 653
PfoI TCCNGGA 1 cut(s) 430
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
PpuMI RGGWCCY 1 cut(s) 428
Psp124BI GAGCTC 1 cut(s) 297
Psp5II RGGWCCY 1 cut(s) 428
Psp6I CCWGG 3 cut(s) 10, 430, 848
PspGI CCWGG 3 cut(s) 10, 430, 848
PspN4I GGNNCC 2 cut(s) 532, 644
PspPI GGNCC 1 cut(s) 428
PspPPI RGGWCCY 1 cut(s) 428
PstI CTGCAG 2 cut(s) 206, 700
PsuI RGATCY 2 cut(s) 109, 214
RsaI GTAC 2 cut(s) 337, 675
RsaNI GTAC 2 cut(s) 336, 674
RseI CAYNNNNRTG 2 cut(s) 180, 668
SacI GAGCTC 1 cut(s) 297
SaqAI TTAA 3 cut(s) 84, 411, 864
Sau3AI GATC 2 cut(s) 109, 214
Sau96I GGNCC 1 cut(s) 428
ScaI AGTACT 1 cut(s) 337
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 3 cut(s) 12, 432, 850
SduI GDGCHC 1 cut(s) 297
SfaNI GCATC 5 cut(s) 109, 365, 469, 481, 613
SfcI CTRYAG 3 cut(s) 202, 501, 696
SinI GGWCC 1 cut(s) 428
SmiMI CAYNNNNRTG 2 cut(s) 180, 668
Sse9I AATT 4 cut(s) 94, 375, 384, 542
SspMI CTAG 3 cut(s) 321, 465, 737
SstI GAGCTC 1 cut(s) 297
StyD4I CCNGG 3 cut(s) 10, 430, 848
StyI CCWWGG 2 cut(s) 49, 298
TaaI ACNGT 3 cut(s) 196, 348, 505
TaqI TCGA 1 cut(s) 99
TasI AATT 4 cut(s) 94, 375, 384, 542
TatI WGTACW 1 cut(s) 335
TfiI GAWTC 3 cut(s) 152, 311, 728
Tru1I TTAA 3 cut(s) 84, 411, 864
Tru9I TTAA 3 cut(s) 84, 411, 864
TscAI CASTG 2 cut(s) 225, 616
TseFI GTSAC 1 cut(s) 568
Tsp45I GTSAC 1 cut(s) 568
TspDTI ATGAA 5 cut(s) 14, 42, 84, 102, 656
TspRI CASTG 2 cut(s) 225, 616
Van91I CCANNNNNTGG 1 cut(s) 653
VpaK11BI GGWCC 1 cut(s) 428
XapI RAATTY 1 cut(s) 384
XceI RCATGY 1 cut(s) 711
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 3 cut(s) 321, 465, 737
ZrmI AGTACT 1 cut(s) 337
Zsp2I ATGCAT 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.