Rorug07G0118300

Angio-associated migratory cell

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001404
Physical Location & Seq
Reverse (-)
9293223 .. 9295954
2732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0118300.1

Sequence Viewer

Length: 651 bp
ATGGGAATTGCTGATGGAAAACAAGACATAACAGAAAGTGAATTGGACAAAATGCCATACGTGAAAGCTGTGATCATTGAAACACTTAGTACGTATCCTCCAATGCCGTTGCTGGGTACTCGAGAGTCAACCCAAGATGCTAAAATAAAGGGCTACGACATAGCAGCAAAAACCATGGTCATAATAAATGCCTGGGAAATTGGAAGGGACCCTTCTCTGTGGGATGAACCAGAGAAGTTTCAACCGGATAGATTTATGAATTCTAGTACGGACTTCAGAGGACAGGACGTTCAGTTTATCCCATTTGAAGCTGGCAGGAGAGGTTGCCCAGGAATCCTATTTTCGATGATCACTACTGAGCTTGTGCTAGTAAATCTTGTGCACAAGTTTGAGTGGGCATTGCATAGTGGCGCTAGAGCTAGGGATATGAACATGACAGAATGCAATAGTCTTGTCATCCACAGAGATGTTCCTCTTCTAGCTATGGCAGCACCATGGAATAGAAACTGTCCCTGGGGTGGCCGGAAGCCGCCGGAAAACACCACCACAGTGGCGGCACCGCCACCGGCCCAAAGTCGGAATTTGGCAAAACTTTCAACACCAAAGTTCTTCATCTCAACTCCAATTGAAACTTTCATAACTACACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

216

Amino Acids

24.15

Weight (kDa)

5.96

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 6 - 152 7e-41 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 556
AciI CCGC 3 cut(s) 530, 554, 560
AcoI YGGCCR 1 cut(s) 520
AcsI RAATTY 2 cut(s) 259, 580
AcuI CTGAAG 1 cut(s) 259
AfaI GTAC 3 cut(s) 91, 118, 268
AfiI CCNNNNNNNGG 3 cut(s) 113, 518, 576
AgsI TTSAA 5 cut(s) 80, 242, 308, 597, 629
AjnI CCWGG 3 cut(s) 191, 328, 512
AleI CACNNNNGTG 1 cut(s) 548
AloI GAACNNNNNNTCC 2 cut(s) 273, 305
AluBI AGCT 5 cut(s) 68, 311, 361, 419, 482
AluI AGCT 5 cut(s) 68, 311, 361, 419, 482
Alw21I GWGCWC 1 cut(s) 384
Alw44I GTGCAC 1 cut(s) 380
Ama87I CYCGRG 1 cut(s) 120
AoxI GGCC 2 cut(s) 520, 567
ApaLI GTGCAC 1 cut(s) 380
ApeKI GCWGC 2 cut(s) 164, 488
ApoI RAATTY 2 cut(s) 259, 580
AspLEI GCGC 1 cut(s) 413
AspS9I GGNCC 2 cut(s) 208, 568
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 384
BanI GGYRCC 1 cut(s) 556
Bbv12I GWGCWC 1 cut(s) 384
BbvI GCAGC 2 cut(s) 176, 500
BccI CCATC 1 cut(s) 8
BceAI ACGGC 1 cut(s) 91
BciT130I CCWGG 3 cut(s) 193, 330, 514
BciVI GTATCC 1 cut(s) 105
BclI TGATCA 2 cut(s) 72, 348
BfaI CTAG 5 cut(s) 264, 368, 414, 420, 479
BfoI RGCGCY 1 cut(s) 414
BfuI GTATCC 1 cut(s) 105
BisI GCNGC 4 cut(s) 165, 489, 530, 555
BlsI GCNGC 4 cut(s) 166, 490, 531, 556
Bme1390I CCNGG 3 cut(s) 193, 330, 514
Bme18I GGWCC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 120
BmgT120I GGNCC 2 cut(s) 208, 568
BmiI GGNNCC 3 cut(s) 209, 210, 558
BmrFI CCNGG 3 cut(s) 193, 330, 514
BmsI GCATC 1 cut(s) 127
BsaAI YACGTR 2 cut(s) 61, 93
BsaJI CCNNGG 6 cut(s) 174, 192, 328, 494, 512, 513
BsaWI WCCGGW 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 518, 576
Bse118I RCCGGY 1 cut(s) 565
Bse3DI GCAATG 1 cut(s) 398
BseBI CCWGG 3 cut(s) 193, 330, 514
BseDI CCNNGG 6 cut(s) 174, 192, 328, 494, 512, 513
BseGI GGATG 2 cut(s) 229, 456
BseLI CCNNNNNNNGG 3 cut(s) 113, 518, 576
BseMI GCAATG 1 cut(s) 398
BseMII CTCAG 1 cut(s) 348
BseSI GKGCMC 1 cut(s) 384
BseXI GCAGC 2 cut(s) 176, 500
BseYI CCCAGC 1 cut(s) 112
BshFI GGCC 2 cut(s) 522, 569
BshNI GGYRCC 1 cut(s) 556
BsiHKAI GWGCWC 1 cut(s) 384
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 4 cut(s) 245, 523, 533, 566
BslFI GGGAC 2 cut(s) 221, 495
BslI CCNNNNNNNGG 3 cut(s) 113, 518, 576
BsmFI GGGAC 2 cut(s) 221, 495
BsmI GAATGC 1 cut(s) 446
BsnI GGCC 2 cut(s) 522, 569
BsoBI CYCGRG 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 384
Bsp143I GATC 2 cut(s) 72, 348
Bsp19I CCATGG 2 cut(s) 174, 494
BspACI CCGC 3 cut(s) 530, 554, 560
BspANI GGCC 2 cut(s) 522, 569
BspCNI CTCAG 1 cut(s) 349
BspLI GGNNCC 3 cut(s) 209, 210, 558
BspT107I GGYRCC 1 cut(s) 556
BsrDI GCAATG 1 cut(s) 398
BsrFI RCCGGY 1 cut(s) 565
BssAI RCCGGY 1 cut(s) 565
BssECI CCNNGG 6 cut(s) 174, 192, 328, 494, 512, 513
BssMI GATC 2 cut(s) 72, 348
BssT1I CCWWGG 2 cut(s) 174, 494
Bst2UI CCWGG 3 cut(s) 193, 330, 514
Bst4CI ACNGT 2 cut(s) 509, 550
Bst6I CTCTTC 1 cut(s) 480
BstBAI YACGTR 2 cut(s) 61, 93
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 2 cut(s) 86, 357
BstDSI CCRYGG 2 cut(s) 174, 494
BstF5I GGATG 2 cut(s) 229, 456
BstH2I RGCGCY 1 cut(s) 414
BstHHI GCGC 1 cut(s) 413
BstKTI GATC 2 cut(s) 75, 351
BstMBI GATC 2 cut(s) 72, 348
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstNI CCWGG 3 cut(s) 193, 330, 514
BstSCI CCNGG 3 cut(s) 191, 328, 512
BstSLI GKGCMC 1 cut(s) 384
BstSNI TACGTA 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 176, 500
BstXI CCANNNNNNTGG 1 cut(s) 550
BsuI GTATCC 1 cut(s) 105
BsuRI GGCC 2 cut(s) 522, 569
BtgI CCRYGG 2 cut(s) 174, 494
BtsCI GGATG 2 cut(s) 229, 456
BtsIMutI CAGTG 1 cut(s) 555
Cac8I GCNNGC 1 cut(s) 313
CfoI GCGC 1 cut(s) 413
Cfr10I RCCGGY 1 cut(s) 565
Cfr13I GGNCC 2 cut(s) 208, 568
Csp6I GTAC 3 cut(s) 90, 117, 267
CviAII CATG 3 cut(s) 175, 433, 495
CviJI RGCY 9 cut(s) 68, 153, 311, 361, 419, 482, 522, 529, 569
CviKI_1 RGCY 9 cut(s) 68, 153, 311, 361, 419, 482, 522, 529, 569
CviQI GTAC 3 cut(s) 90, 117, 267
DdeI CTNAG 2 cut(s) 86, 357
DpnI GATC 2 cut(s) 74, 350
DpnII GATC 2 cut(s) 72, 348
EaeI YGGCCR 1 cut(s) 520
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco105I TACGTA 1 cut(s) 93
Eco130I CCWWGG 2 cut(s) 174, 494
Eco47I GGWCC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 208
EcoRI GAATTC 1 cut(s) 259
EcoRII CCWGG 3 cut(s) 191, 328, 512
EcoT14I CCWWGG 2 cut(s) 174, 494
ErhI CCWWGG 2 cut(s) 174, 494
FaeI CATG 3 cut(s) 178, 436, 498
FalI AAGNNNNNCTT 2 cut(s) 196, 228
FaqI GGGAC 2 cut(s) 221, 495
FatI CATG 3 cut(s) 174, 432, 494
FbaI TGATCA 2 cut(s) 72, 348
Fnu4HI GCNGC 4 cut(s) 165, 489, 530, 555
FokI GGATG 2 cut(s) 236, 443
Fsp4HI GCNGC 4 cut(s) 165, 489, 530, 555
FspBI CTAG 5 cut(s) 264, 368, 414, 420, 479
GlaI GCGC 1 cut(s) 412
GluI GCNGC 4 cut(s) 165, 489, 530, 555
GsaI CCCAGC 1 cut(s) 116
HaeII RGCGCY 1 cut(s) 414
HaeIII GGCC 2 cut(s) 522, 569
HapII CCGG 4 cut(s) 245, 523, 533, 566
HhaI GCGC 1 cut(s) 413
Hin1II CATG 3 cut(s) 178, 436, 498
Hin6I GCGC 1 cut(s) 411
HinP1I GCGC 1 cut(s) 411
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HinfI GANTC 2 cut(s) 125, 333
HpaII CCGG 4 cut(s) 245, 523, 533, 566
Hpy166II GTNNAC 2 cut(s) 129, 382
Hpy188I TCNGA 2 cut(s) 278, 579
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 2 cut(s) 129, 382
HpyAV CCTTC 2 cut(s) 198, 222
HpyCH4III ACNGT 2 cut(s) 509, 550
HpyCH4IV ACGT 3 cut(s) 60, 92, 288
HpyCH4V TGCA 3 cut(s) 382, 403, 444
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpyF3I CTNAG 2 cut(s) 86, 357
HpySE526I ACGT 3 cut(s) 60, 92, 288
Hsp92II CATG 3 cut(s) 178, 436, 498
HspAI GCGC 1 cut(s) 411
KflI GGGWCCC 1 cut(s) 208
Ksp22I TGATCA 2 cut(s) 72, 348
Kzo9I GATC 2 cut(s) 72, 348
Lsp1109I GCAGC 2 cut(s) 176, 500
LweI GCATC 1 cut(s) 127
MaeI CTAG 5 cut(s) 264, 368, 414, 420, 479
MaeII ACGT 3 cut(s) 60, 92, 288
MalI GATC 2 cut(s) 74, 350
MboI GATC 2 cut(s) 72, 348
MboII GAAGA 2 cut(s) 467, 601
MfeI CAATTG 1 cut(s) 624
MhlI GDGCHC 1 cut(s) 384
MluCI AATT 6 cut(s) 6, 41, 198, 259, 580, 624
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 557
MnlI CCTC 4 cut(s) 108, 272, 314, 483
MslI CAYNNNNRTG 2 cut(s) 465, 548
MspI CCGG 4 cut(s) 245, 523, 533, 566
MspR9I CCNGG 3 cut(s) 193, 330, 514
MunI CAATTG 1 cut(s) 624
Mva1269I GAATGC 1 cut(s) 446
MvaI CCWGG 3 cut(s) 193, 330, 514
MwoI GCNNNNNNNGC 1 cut(s) 488
NcoI CCATGG 2 cut(s) 174, 494
NdeII GATC 2 cut(s) 72, 348
NlaIII CATG 3 cut(s) 178, 436, 498
NlaIV GGNNCC 3 cut(s) 209, 210, 558
OliI CACNNNNGTG 1 cut(s) 548
PaeR7I CTCGAG 1 cut(s) 120
PasI CCCWGGG 1 cut(s) 513
PctI GAATGC 1 cut(s) 446
PfeI GAWTC 1 cut(s) 333
PkrI GCNGC 4 cut(s) 166, 490, 531, 556
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
Ppu21I YACGTR 2 cut(s) 61, 93
PpuMI RGGWCCY 1 cut(s) 208
Psp5II RGGWCCY 1 cut(s) 208
Psp6I CCWGG 3 cut(s) 191, 328, 512
PspFI CCCAGC 1 cut(s) 112
PspGI CCWGG 3 cut(s) 191, 328, 512
PspN4I GGNNCC 3 cut(s) 209, 210, 558
PspPI GGNCC 2 cut(s) 208, 568
PspPPI RGGWCCY 1 cut(s) 208
RsaI GTAC 3 cut(s) 91, 118, 268
RsaNI GTAC 3 cut(s) 90, 117, 267
RseI CAYNNNNRTG 2 cut(s) 465, 548
SatI GCNGC 4 cut(s) 165, 489, 530, 555
Sau3AI GATC 2 cut(s) 72, 348
Sau96I GGNCC 2 cut(s) 208, 568
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 3 cut(s) 193, 330, 514
SduI GDGCHC 1 cut(s) 384
SetI ASST 9 cut(s) 63, 70, 95, 291, 313, 325, 363, 421, 484
SfaNI GCATC 1 cut(s) 127
Sfr274I CTCGAG 1 cut(s) 120
SinI GGWCC 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 120
SmiMI CAYNNNNRTG 2 cut(s) 465, 548
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
SnaBI TACGTA 1 cut(s) 93
Sse9I AATT 6 cut(s) 6, 41, 198, 259, 580, 624
SsiI CCGC 3 cut(s) 530, 554, 560
SspMI CTAG 5 cut(s) 264, 368, 414, 420, 479
StyD4I CCNGG 3 cut(s) 191, 328, 512
StyI CCWWGG 2 cut(s) 174, 494
TaaI ACNGT 2 cut(s) 509, 550
TaiI ACGT 3 cut(s) 63, 95, 291
TaqI TCGA 2 cut(s) 121, 344
TasI AATT 6 cut(s) 6, 41, 198, 259, 580, 624
TauI GCSGC 2 cut(s) 532, 557
TfiI GAWTC 1 cut(s) 333
TscAI CASTG 1 cut(s) 555
TseI GCWGC 2 cut(s) 164, 488
TspDTI ATGAA 5 cut(s) 240, 272, 443, 601, 625
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 1 cut(s) 555
VneI GTGCAC 1 cut(s) 380
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 2 cut(s) 259, 580
XhoI CTCGAG 1 cut(s) 120
XspI CTAG 5 cut(s) 264, 368, 414, 420, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.