Rh7DG441200

Angio-associated migratory cell

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001404
Physical Location & Seq
Reverse (-)
62655540 .. 62657146
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG441200.1

Sequence Viewer

Length: 654 bp
ATGAGGCTCAGAACGCTTTGCAGGCTCTCGCTGCCGACACTGAGGGCTTCTTGGAGATGGTCTCAACAGGTCTCGGATGAAGGCGATGTGCTTTATGTTTTCCCCAAAGATTATCGAGCAAAGCTTCTTGCCAAGTCGTTTCGATTGAGAATTGAGCCTCTGCTGGAGAAGGCAAAGGCCGGGACCGAGTATGTAGCGAGGGTTTCATTTAGAACTGCCCTCATTGCCTCCATTGTTCTTGTTTATATTGCAATCATTGTTGCCCTTTCTTCCAGTAGGAGGAAGATTGATTATAATGCTTTGGTTACAGCGAGGATGACAATCATGGACGACGTGGAAGATCATATGATTCGGGGAGAAGTAACAGAAGTAGCAGACTGTAGTTTCCCTTGGGCTGCAATAGGAGGTATGGATAACAAGCTTATCATCTGGGATTTGCAACATTCGTACCTAGCAACAGGTTGTGCGGATGGGAAGGTCCGATTATGGGATAGTCTCTCTGGTGATTGTGTAAGAACCTTCAATGGGCATAGTGAACCCATTCAGTCTCTCTCTGTATCTGCCAACAAGGACTTCCTTGTTTCAGTATCTACTGATGGAACCGCTCGAGTTTATGAGATTGAAGAATATAAGCAAGCAATATACCCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

217

Amino Acids

24.45

Weight (kDa)

7.65

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EIF3I PF24805 137 - 212 2.2e-08 EIF3I
Beta-prop_THOC3 PF25174 143 - 212 8.9e-13 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 144 - 210 1.2e-14 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 144 - 209 9.3e-08 CDC20/Fizzy WD40 domain
WD40_MABP1-WDR62_2nd PF24782 145 - 204 9.2e-10 MABP1/WDR62 second WD40 domain
WDR55 PF24796 146 - 211 4.6e-09 WDR55
Beta-prop_EML_2 PF23414 146 - 211 1e-05 Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st PF24817 147 - 212 9e-11 WDHD1 first WD40 domain
WD40_Prp19 PF24814 147 - 210 9.3e-11 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 147 - 209 4e-07 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 148 - 209 1e-11 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 149 - 206 6.4e-08 WDR3 second beta-propeller domain
Beta-prop_TEP1_2nd PF25047 151 - 208 2.2e-07 TEP-1 second beta-propeller
WD40 PF00400 168 - 205 5.8e-08 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 294
AccBSI CCGCTC 1 cut(s) 605
AciI CCGC 2 cut(s) 467, 603
AfaI GTAC 1 cut(s) 449
AfiI CCNNNNNNNGG 3 cut(s) 279, 487, 525
AgsI TTSAA 2 cut(s) 523, 623
AjiI CACGTC 1 cut(s) 334
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AluBI AGCT 2 cut(s) 124, 421
AluI AGCT 2 cut(s) 124, 421
Alw26I GTCTC 4 cut(s) 66, 76, 500, 552
Ama87I CYCGRG 1 cut(s) 606
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 31, 395
Asp700I GAANNNNTTC 1 cut(s) 540
AspS9I GGNCC 2 cut(s) 183, 478
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 515
AvaI CYCGRG 1 cut(s) 606
AvaII GGWCC 2 cut(s) 183, 478
BaeI ACNNNNGTAYC 2 cut(s) 431, 464
BbvI GCAGC 2 cut(s) 18, 382
BccI CCATC 3 cut(s) 51, 464, 590
BcnI CCSGG 1 cut(s) 181
BcoDI GTCTC 4 cut(s) 66, 76, 500, 552
BfaI CTAG 1 cut(s) 452
BfmI CTRYAG 1 cut(s) 379
BisI GCNGC 2 cut(s) 32, 396
BlsI GCNGC 2 cut(s) 33, 397
Bme1390I CCNGG 1 cut(s) 181
Bme18I GGWCC 2 cut(s) 183, 478
BmeT110I CYCGRG 1 cut(s) 606
BmgBI CACGTC 1 cut(s) 334
BmgT120I GGNCC 2 cut(s) 183, 478
BmiI GGNNCC 2 cut(s) 184, 601
BmrFI CCNGG 1 cut(s) 181
BplI GAGNNNNNCTC 2 cut(s) 46, 78
BpmI CTGGAG 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 181
BsaBI GATNNNNATC 1 cut(s) 320
BsaI GGTCTC 2 cut(s) 66, 76
BsaJI CCNNGG 1 cut(s) 389
Bsc4I CCNNNNNNNGG 3 cut(s) 279, 487, 525
Bse1I ACTGG 1 cut(s) 273
Bse3DI GCAATG 1 cut(s) 222
Bse8I GATNNNNATC 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 389
BseGI GGATG 3 cut(s) 82, 321, 475
BseJI GATNNNNATC 1 cut(s) 320
BseLI CCNNNNNNNGG 3 cut(s) 279, 487, 525
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 2 cut(s) 22, 32
BseNI ACTGG 1 cut(s) 273
BseXI GCAGC 2 cut(s) 18, 382
BshFI GGCC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 606
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 3 cut(s) 279, 487, 525
BsmAI GTCTC 4 cut(s) 66, 76, 500, 552
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 1 cut(s) 179
Bso31I GGTCTC 2 cut(s) 66, 76
BsoBI CYCGRG 1 cut(s) 606
Bsp143I GATC 1 cut(s) 340
BspACI CCGC 2 cut(s) 467, 603
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 2 cut(s) 21, 33
BspLI GGNNCC 2 cut(s) 184, 601
BspTNI GGTCTC 2 cut(s) 66, 76
BsrBI CCGCTC 1 cut(s) 605
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 1 cut(s) 273
BssECI CCNNGG 1 cut(s) 389
BssMI GATC 1 cut(s) 340
BssT1I CCWWGG 1 cut(s) 389
Bst4CI ACNGT 1 cut(s) 380
BstC8I GCNNGC 2 cut(s) 23, 636
BstDEI CTNAG 2 cut(s) 8, 41
BstF5I GGATG 3 cut(s) 82, 321, 475
BstKTI GATC 1 cut(s) 343
BstMAI GTCTC 4 cut(s) 66, 76, 500, 552
BstMBI GATC 1 cut(s) 340
BstMWI GCNNNNNNNGC 4 cut(s) 13, 22, 31, 224
BstSCI CCNGG 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 379
BstV1I GCAGC 2 cut(s) 18, 382
BsuRI GGCC 1 cut(s) 179
BtgZI GCGATG 1 cut(s) 99
BtrI CACGTC 1 cut(s) 334
BtsCI GGATG 3 cut(s) 82, 321, 475
BtsIMutI CAGTG 1 cut(s) 38
Cac8I GCNNGC 2 cut(s) 23, 636
Cfr13I GGNCC 2 cut(s) 183, 478
Csp6I GTAC 1 cut(s) 448
CviAII CATG 1 cut(s) 325
CviJI RGCY 8 cut(s) 7, 25, 47, 124, 157, 179, 395, 421
CviKI_1 RGCY 8 cut(s) 7, 25, 47, 124, 157, 179, 395, 421
CviQI GTAC 1 cut(s) 448
DdeI CTNAG 2 cut(s) 8, 41
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 389
Eco31I GGTCTC 2 cut(s) 66, 76
Eco47I GGWCC 2 cut(s) 183, 478
Eco88I CYCGRG 1 cut(s) 606
EcoT14I CCWWGG 1 cut(s) 389
ErhI CCWWGG 1 cut(s) 389
FaeI CATG 1 cut(s) 328
FaqI GGGAC 1 cut(s) 196
FatI CATG 1 cut(s) 324
FauNDI CATATG 1 cut(s) 345
Fnu4HI GCNGC 2 cut(s) 32, 396
FokI GGATG 3 cut(s) 89, 328, 482
Fsp4HI GCNGC 2 cut(s) 32, 396
FspBI CTAG 1 cut(s) 452
GluI GCNGC 2 cut(s) 32, 396
GsuI CTGGAG 1 cut(s) 185
HaeIII GGCC 1 cut(s) 179
HapII CCGG 1 cut(s) 180
Hin1II CATG 1 cut(s) 328
HindIII AAGCTT 2 cut(s) 122, 419
HinfI GANTC 1 cut(s) 349
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 1 cut(s) 536
Hpy188I TCNGA 3 cut(s) 11, 76, 482
Hpy8I GTNNAC 1 cut(s) 536
Hpy99I CGWCG 1 cut(s) 335
HpyAV CCTTC 4 cut(s) 74, 163, 469, 529
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 4 cut(s) 21, 251, 398, 439
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 22, 31, 224
HpyF3I CTNAG 2 cut(s) 8, 41
HpySE526I ACGT 1 cut(s) 333
Hsp92II CATG 1 cut(s) 328
Kzo9I GATC 1 cut(s) 340
LpnPI CCDG 8 cut(s) 7, 53, 149, 193, 286, 415, 444, 486
Lsp1109I GCAGC 2 cut(s) 18, 382
MaeI CTAG 1 cut(s) 452
MaeII ACGT 1 cut(s) 333
MaeIII GTNAC 2 cut(s) 304, 361
MalI GATC 1 cut(s) 342
MbiI CCGCTC 1 cut(s) 605
MboI GATC 1 cut(s) 340
MboII GAAGA 4 cut(s) 261, 295, 350, 635
MluCI AATT 1 cut(s) 150
MnlI CCTC 8 cut(s) 36, 168, 192, 230, 238, 273, 306, 398
MroXI GAANNNNTTC 1 cut(s) 540
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 181
MwoI GCNNNNNNNGC 4 cut(s) 13, 22, 31, 224
NciI CCSGG 1 cut(s) 181
NdeI CATATG 1 cut(s) 345
NdeII GATC 1 cut(s) 340
NlaIII CATG 1 cut(s) 328
NlaIV GGNNCC 2 cut(s) 184, 601
PaeR7I CTCGAG 1 cut(s) 606
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 1 cut(s) 349
PkrI GCNGC 2 cut(s) 33, 397
PsiI TTATAA 1 cut(s) 294
PspN4I GGNNCC 2 cut(s) 184, 601
PspPI GGNCC 2 cut(s) 183, 478
PspXI VCTCGAGB 1 cut(s) 606
RsaI GTAC 1 cut(s) 449
RsaNI GTAC 1 cut(s) 448
SatI GCNGC 2 cut(s) 32, 396
Sau3AI GATC 1 cut(s) 340
Sau96I GGNCC 2 cut(s) 183, 478
ScrFI CCNGG 1 cut(s) 181
SetI ASST 9 cut(s) 72, 126, 336, 409, 423, 453, 463, 480, 521
SfcI CTRYAG 1 cut(s) 379
Sfr274I CTCGAG 1 cut(s) 606
SinI GGWCC 2 cut(s) 183, 478
SlaI CTCGAG 1 cut(s) 606
SmlI CTYRAG 1 cut(s) 606
SmoI CTYRAG 1 cut(s) 606
Sse9I AATT 1 cut(s) 150
SsiI CCGC 2 cut(s) 467, 603
SspMI CTAG 1 cut(s) 452
StyD4I CCNGG 1 cut(s) 179
StyI CCWWGG 1 cut(s) 389
TaaI ACNGT 1 cut(s) 380
TaiI ACGT 1 cut(s) 336
TaqI TCGA 3 cut(s) 115, 142, 607
TaqII GACCGA 1 cut(s) 200
TasI AATT 1 cut(s) 150
TfiI GAWTC 1 cut(s) 349
TscAI CASTG 1 cut(s) 45
TseI GCWGC 2 cut(s) 31, 395
TspDTI ATGAA 3 cut(s) 93, 195, 639
TspRI CASTG 1 cut(s) 45
VpaK11BI GGWCC 2 cut(s) 183, 478
XhoI CTCGAG 1 cut(s) 606
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.