RchiOBHm_Chr2g0090611

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001404
Physical Location & Seq
Forward (+)
4385393 .. 4386667
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46585

Sequence Viewer

Length: 123 bp
ATGACGCGGTCAACGGAGCTCATCATCGGTGAAGACCCCGATGAAGGTCCCCAAGTCGCCGTAAAAGGTGACTCCTGCTGTGAAGAGCCTTCAGCAAAAGTCCAATTCATTGTTCTCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

40

Amino Acids

4.31

Weight (kDa)

4.12

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 7
AciI CCGC 1 cut(s) 7
AcuI CTGAAG 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 44
AjuI GAANNNNNNNTTGG 1 cut(s) 96
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw21I GWGCWC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 2 cut(s) 41, 80
AvaII GGWCC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 21
BceAI ACGGC 1 cut(s) 44
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 21
BslFI GGGAC 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 21
BspACI CCGC 1 cut(s) 7
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 49
BspQI GCTCTTC 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 78
BstFNI CGCG 1 cut(s) 7
BstUI CGCG 1 cut(s) 7
BstV2I GAAGAC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 47
CseI GACGC 1 cut(s) 13
CviJI RGCY 2 cut(s) 19, 88
CviKI_1 RGCY 2 cut(s) 19, 88
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Ecl136II GAGCTC 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 75
EcoICRI GAGCTC 1 cut(s) 19
EcoO109I RGGNCCY 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 21
FaiI YATR 1 cut(s) 121
FaqI GGGAC 1 cut(s) 33
FriOI GRGCYC 1 cut(s) 21
HgaI GACGC 1 cut(s) 13
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 1 cut(s) 71
HphI GGTGA 2 cut(s) 41, 80
Hpy166II GTNNAC 1 cut(s) 12
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 2 cut(s) 38, 99
LguI GCTCTTC 1 cut(s) 78
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 68
MboII GAAGA 2 cut(s) 44, 95
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 1 cut(s) 104
MlyI GAGTC 1 cut(s) 65
MvnI CGCG 1 cut(s) 7
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 68
PciSI GCTCTTC 1 cut(s) 78
PflFI GACNNNGTC 1 cut(s) 7
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
PpuMI RGGWCCY 1 cut(s) 47
Psp124BI GAGCTC 1 cut(s) 21
Psp5II RGGWCCY 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 47
PspPPI RGGWCCY 1 cut(s) 47
PsyI GACNNNGTC 1 cut(s) 7
SacI GAGCTC 1 cut(s) 21
SapI GCTCTTC 1 cut(s) 78
Sau96I GGNCC 1 cut(s) 47
SchI GAGTC 1 cut(s) 65
SduI GDGCHC 1 cut(s) 21
SetI ASST 3 cut(s) 21, 49, 70
SgeI CNNG 4 cut(s) 18, 50, 65, 87
SinI GGWCC 1 cut(s) 47
Sse9I AATT 1 cut(s) 104
SsiI CCGC 1 cut(s) 7
SstI GAGCTC 1 cut(s) 21
TasI AATT 1 cut(s) 104
TseFI GTSAC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 57, 97
TspGWI ACGGA 1 cut(s) 29
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.