Rorug06G0070900

Angio-associated migratory cell

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001404
Physical Location & Seq
Forward (+)
9431367 .. 9433719
2353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0070900.1

Sequence Viewer

Length: 417 bp
ATGGCTGTGGCTCAGGTCTCTGCTTCTCTCTCAGTTTCCATCAGAGATGCAAGTGCAATTAGCTCAGCCAGTCCTGTTCGGCTTCCTGTCTTGAATTTCGGTAGAACTGGGACGGCCTTTGCTACTGGTTCTCCTCTCATCATTAGGACATGTCATCAAAGGAAGGAGACTGGAAGATCAATGGCACTTTCCGTAAGGAGTGAGCAAAGCACCAAGGAGGGCGGTTTGGATGTATGGCTTGGCCGGCTTGGGATGGTTGGGTTTACTGCGGCTATTGGTGTCGAGATAGCAACAGGGAAGGGACTTCTAGAGAACTTTGGGCTCACAAGTCCCCTACCTACCGCTGCTTTGGCTGTTACAGCATTGGTGGGAGTTTTAACAGCAGTTTTCATTTTCCAGTCTGGCTCAGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

138

Amino Acids

14.15

Weight (kDa)

9.76

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 222, 269, 342
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 1 cut(s) 94
AflIII ACRYGT 1 cut(s) 149
AgsI TTSAA 1 cut(s) 94
AluBI AGCT 1 cut(s) 63
AluI AGCT 1 cut(s) 63
Alw26I GTCTC 2 cut(s) 22, 161
AoxI GGCC 2 cut(s) 114, 241
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 1 cut(s) 94
BanII GRGCYC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 331
BccI CCATC 2 cut(s) 47, 247
BceAI ACGGC 1 cut(s) 129
BcoDI GTCTC 2 cut(s) 22, 161
BfaI CTAG 1 cut(s) 308
BisI GCNGC 2 cut(s) 270, 345
BlpI GCTNAGC 1 cut(s) 64
BlsI GCNGC 2 cut(s) 271, 346
BmrI ACTGGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 37
BmuI ACTGGG 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 12
Bpu1102I GCTNAGC 1 cut(s) 64
BsaI GGTCTC 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bse118I RCCGGY 1 cut(s) 243
Bse1I ACTGG 5 cut(s) 69, 112, 130, 175, 397
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 2 cut(s) 235, 258
BseMII CTCAG 3 cut(s) 26, 45, 78
BseNI ACTGG 5 cut(s) 69, 112, 130, 175, 397
BseRI GAGGAG 1 cut(s) 123
BseXI GCAGC 1 cut(s) 331
BshFI GGCC 2 cut(s) 116, 243
BsiSI CCGG 1 cut(s) 244
BslFI GGGAC 3 cut(s) 124, 315, 315
BsmAI GTCTC 2 cut(s) 22, 161
BsmFI GGGAC 3 cut(s) 124, 315, 315
BsnI GGCC 2 cut(s) 116, 243
Bso31I GGTCTC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 1 cut(s) 176
Bsp1720I GCTNAGC 1 cut(s) 64
BspACI CCGC 3 cut(s) 222, 269, 342
BspANI GGCC 2 cut(s) 116, 243
BspCNI CTCAG 3 cut(s) 25, 44, 77
BspTNI GGTCTC 1 cut(s) 22
BsrFI RCCGGY 1 cut(s) 243
BsrI ACTGG 5 cut(s) 69, 112, 130, 175, 397
BssAI RCCGGY 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 1 cut(s) 176
BssT1I CCWWGG 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 245
BstDEI CTNAG 4 cut(s) 12, 31, 64, 406
BstF5I GGATG 2 cut(s) 235, 258
BstKTI GATC 1 cut(s) 179
BstMAI GTCTC 2 cut(s) 22, 161
BstMBI GATC 1 cut(s) 176
BstMWI GCNNNNNNNGC 3 cut(s) 244, 350, 359
BstNSI RCATGY 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 331
BsuRI GGCC 2 cut(s) 116, 243
BtsCI GGATG 2 cut(s) 235, 258
Cac8I GCNNGC 1 cut(s) 245
Cfr10I RCCGGY 1 cut(s) 243
CviAII CATG 1 cut(s) 150
DdeI CTNAG 4 cut(s) 12, 31, 64, 406
DpnI GATC 1 cut(s) 178
DpnII GATC 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 324
Eco31I GGTCTC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 1 cut(s) 153
FaiI YATR 2 cut(s) 151, 235
FaqI GGGAC 3 cut(s) 124, 315, 315
FatI CATG 1 cut(s) 149
Fnu4HI GCNGC 2 cut(s) 270, 345
FokI GGATG 2 cut(s) 242, 265
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 2 cut(s) 270, 345
FspBI CTAG 1 cut(s) 308
GluI GCNGC 2 cut(s) 270, 345
HaeIII GGCC 2 cut(s) 116, 243
HapII CCGG 1 cut(s) 244
Hin1II CATG 1 cut(s) 153
HpaII CCGG 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 264
Hpy188I TCNGA 2 cut(s) 44, 409
Hpy188III TCNNGA 3 cut(s) 91, 283, 308
Hpy8I GTNNAC 1 cut(s) 264
HpyAV CCTTC 2 cut(s) 157, 292
HpyCH4V TGCA 2 cut(s) 50, 56
HpyF10VI GCNNNNNNNGC 3 cut(s) 244, 350, 359
HpyF3I CTNAG 4 cut(s) 12, 31, 64, 406
Hsp92II CATG 1 cut(s) 153
KroI GCCGGC 1 cut(s) 243
KroNI GCCGGC 1 cut(s) 245
Kzo9I GATC 1 cut(s) 176
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 1 cut(s) 37
MaeI CTAG 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 355
MalI GATC 1 cut(s) 178
MboI GATC 1 cut(s) 176
MboII GAAGA 1 cut(s) 186
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 3 cut(s) 57, 94, 412
MnlI CCTC 2 cut(s) 144, 211
MroNI GCCGGC 1 cut(s) 243
MseI TTAA 2 cut(s) 377, 415
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 1 cut(s) 244
MwoI GCNNNNNNNGC 3 cut(s) 244, 350, 359
NaeI GCCGGC 1 cut(s) 245
NdeII GATC 1 cut(s) 176
NgoMIV GCCGGC 1 cut(s) 243
NlaIII CATG 1 cut(s) 153
NspI RCATGY 1 cut(s) 153
PciI ACATGT 1 cut(s) 149
PdiI GCCGGC 1 cut(s) 245
PkrI GCNGC 2 cut(s) 271, 346
PscI ACATGT 1 cut(s) 149
SaqAI TTAA 2 cut(s) 377, 415
SatI GCNGC 2 cut(s) 270, 345
Sau3AI GATC 1 cut(s) 176
SduI GDGCHC 1 cut(s) 324
SetI ASST 3 cut(s) 18, 65, 340
SfaNI GCATC 1 cut(s) 37
Sse9I AATT 3 cut(s) 57, 94, 412
SsiI CCGC 3 cut(s) 222, 269, 342
SspMI CTAG 1 cut(s) 308
StyI CCWWGG 1 cut(s) 213
TaqI TCGA 1 cut(s) 282
TasI AATT 3 cut(s) 57, 94, 412
TauI GCSGC 1 cut(s) 272
Tru1I TTAA 2 cut(s) 377, 415
Tru9I TTAA 2 cut(s) 377, 415
TseI GCWGC 1 cut(s) 344
TspDTI ATGAA 1 cut(s) 379
TspGWI ACGGA 1 cut(s) 181
XapI RAATTY 1 cut(s) 94
XbaI TCTAGA 1 cut(s) 307
XceI RCATGY 1 cut(s) 153
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.