Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008781.1

Orthogroup ID

OG0001404

Physical Location & Seq

Genomic Coordinates Reverse (-)

18685 .. 22399

Gene Structure 3715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008781.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgcatacatttactggtcatacgggccataaggattctgtttctagtttagcatttagtactgatggacagttgcttgcatctggaagcttggatggaattattcaaatttgggatataacatcagcaaatctaaaatttattactgttgaaggtcctggagggggcattgagtgggtcaggtggcatcctagagggcatctggtcctggctggttcagaggactctacagtttggatgtggaatggcgacaaaggttcctatcttcaattgttttcagggcatggtggtagcgtgacttgtggtgattttacccccgatggtaaaacaatctgcactggttctaatgatgcaagtttgagaatatggaacccaaaaagtggagagaacattcatgtggtacaaggtcatccttaccattctgcagggttgacatgcttggcaataagctctgattcaactctagctgttactggttctgaagatggatctgtccatattgtaaatataactactggaaaggttgttagttccctggcttcacattcagattcagtagaatgtatcggacttgcaccaagtttcccttgggctgcaacaggaggtatggataacaagcttatcatctgggatttgcaacattcgttgccccgttctacatgtgaccatgaggatggagtgacatgcttgacctggcttggggtatctaggtacctagcaacaggttgtgcggatgggaaggtccgattatgggatagtctctctggtgattgtgtaagaaccttcaatgggcatagtgaacccattcagtctctctctgtatctgccaacgaggacttccttgtttcagtatctgctgatggaactgcccgagtttttgagattgaagaatataagcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

300

Amino Acids

31.94

Weight (kDa)

5.13

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71840
fragaria_vesca	FvH4_2g12470 FvH4_2g12470 FvH4_2g12470 FvH4_2g12470 FvH4_2g12470 FvH4_5g22350 FvH4_5g22350 FvH4_5g22350
malus_domestica	MD02G1272000.v1.1 MD07G1041000.v1.1
prunus_persica	Prupe.8G049100_v2.0.a1
pyrus_communis	pycom02g23260 pycom07g02840
rosa_chinensis	RchiOBHm_Chr2g0090611 RchiOBHm_Chr6g0272901 RchiOBHm_Chr7g0210071
rosa_laevigata	RLG00000003067 RLG00000013656 RLG00000033627 RLG00000036778
rosa_multiflora	Rmu_sc0004509.1_g000030 Rmu_sc0008713.1_g000025 Rmu_sc0008781.1_g000006
rosa_roxburghii	Rroxscaffold_1G00044090 Rroxscaffold_3G00248630 Rroxscaffold_7G00195930
rosa_rugosa	Rorug06G0070800 Rorug06G0070800 Rorug06G0070900 Rorug06G0071000 Rorug07G0118200 Rorug07G0118300 Rorug07G0118400 Rorug07G0163000 Rorug07G0163000 Rorug07G0163100
rosa_samantha	Rh2AG361700 Rh3DG184200 Rh5CG229800 Rh6AG187000 Rh6CG158700 Rh6CG189700 Rh6DG181100 Rh7AG251900 Rh7BG246600 Rh7CG268900 Rh7DG258900 Rh7DG441200
rosa_wichuraiana	Rw4G008120 Rw6G016190 Rw6G016260 Rw7G021400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	711
AccB1I	GGYRCC	1 cut(s)	711
AccB7I	CCANNNNNTGG	1 cut(s)	380
AciI	CCGC	1 cut(s)	731
AclWI	GGATC	1 cut(s)	496
AcsI	RAATTY	2 cut(s)	108, 137
AcuI	CTGAAG	1 cut(s)	501
AfaI	GTAC	3 cut(s)	61, 402, 713
AfiI	CCNNNNNNNGG	5 cut(s)	164, 380, 699, 751, 789
AflIII	ACRYGT	1 cut(s)	659
AgsI	TTSAA	6 cut(s)	107, 152, 269, 459, 787, 887
AjnI	CCWGG	4 cut(s)	157, 207, 534, 692
AjuI	GAANNNNNNNTTGG	2 cut(s)	821, 853
AluBI	AGCT	4 cut(s)	90, 450, 467, 619
AluI	AGCT	4 cut(s)	90, 450, 467, 619
Alw26I	GTCTC	2 cut(s)	764, 816
AlwI	GGATC	1 cut(s)	496
AlwNI	CAGNNNCTG	1 cut(s)	854
Ama87I	CYCGRG	1 cut(s)	870
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	593
ApoI	RAATTY	2 cut(s)	108, 137
Asp700I	GAANNNNTTC	1 cut(s)	804
Asp718I	GGTACC	1 cut(s)	711
AspS9I	GGNCC	4 cut(s)	25, 155, 205, 742
AsuHPI	GGTGA	2 cut(s)	317, 779
AvaI	CYCGRG	1 cut(s)	870
AvaII	GGWCC	3 cut(s)	155, 205, 742
BanI	GGYRCC	1 cut(s)	711
BbvI	GCAGC	1 cut(s)	580
BccI	CCATC	7 cut(s)	59, 89, 314, 479, 668, 728, 854
BciT130I	CCWGG	4 cut(s)	159, 209, 536, 694
BcoDI	GTCTC	2 cut(s)	764, 816
BfaI	CTAG	5 cut(s)	45, 192, 464, 708, 716
BfmI	CTRYAG	2 cut(s)	228, 423
BisI	GCNGC	1 cut(s)	594
BlsI	GCNGC	1 cut(s)	595
BmcAI	AGTACT	1 cut(s)	61
Bme1390I	CCNGG	4 cut(s)	159, 209, 536, 694
Bme18I	GGWCC	3 cut(s)	155, 205, 742
BmeT110I	CYCGRG	1 cut(s)	870
BmgT120I	GGNCC	4 cut(s)	25, 155, 205, 742
BmiI	GGNNCC	3 cut(s)	259, 371, 713
BmrFI	CCNGG	4 cut(s)	159, 209, 536, 694
BmsI	GCATC	4 cut(s)	89, 196, 208, 340
BpmI	CTGGAG	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	534, 587
Bsc4I	CCNNNNNNNGG	5 cut(s)	164, 380, 699, 751, 789
Bse1I	ACTGG	4 cut(s)	19, 343, 478, 520
BseBI	CCWGG	4 cut(s)	159, 209, 536, 694
BseDI	CCNNGG	2 cut(s)	534, 587
BseGI	GGATG	6 cut(s)	100, 187, 243, 409, 679, 739
BseLI	CCNNNNNNNGG	5 cut(s)	164, 380, 699, 751, 789
BseNI	ACTGG	4 cut(s)	19, 343, 478, 520
BseXI	GCAGC	1 cut(s)	580
BsgI	GTGCAG	1 cut(s)	319
BshFI	GGCC	1 cut(s)	27
BshNI	GGYRCC	1 cut(s)	711
BsiHKCI	CYCGRG	1 cut(s)	870
BslI	CCNNNNNNNGG	5 cut(s)	164, 380, 699, 751, 789
BsmAI	GTCTC	2 cut(s)	764, 816
BsnI	GGCC	1 cut(s)	27
BsoBI	CYCGRG	1 cut(s)	870
Bsp143I	GATC	1 cut(s)	488
BspACI	CCGC	1 cut(s)	731
BspANI	GGCC	1 cut(s)	27
BspLI	GGNNCC	3 cut(s)	259, 371, 713
BspMAI	CTGCAG	1 cut(s)	427
BspPI	GGATC	1 cut(s)	496
BspT107I	GGYRCC	1 cut(s)	711
BsrI	ACTGG	4 cut(s)	19, 343, 478, 520
BssECI	CCNNGG	2 cut(s)	534, 587
BssMI	GATC	1 cut(s)	488
BssT1I	CCWWGG	1 cut(s)	587
Bst2UI	CCWGG	4 cut(s)	159, 209, 536, 694
Bst4CI	ACNGT	3 cut(s)	72, 148, 232
BstC8I	GCNNGC	1 cut(s)	78
BstF5I	GGATG	6 cut(s)	100, 187, 243, 409, 679, 739
BstKTI	GATC	1 cut(s)	491
BstMAI	GTCTC	2 cut(s)	764, 816
BstMBI	GATC	1 cut(s)	488
BstNI	CCWGG	4 cut(s)	159, 209, 536, 694
BstNSI	RCATGY	3 cut(s)	438, 663, 687
BstSCI	CCNGG	4 cut(s)	157, 207, 534, 692
BstSFI	CTRYAG	2 cut(s)	228, 423
BstV1I	GCAGC	1 cut(s)	580
BstX2I	RGATCY	1 cut(s)	488
BstXI	CCANNNNNNTGG	1 cut(s)	674
BstYI	RGATCY	1 cut(s)	488
BsuRI	GGCC	1 cut(s)	27
BtsCI	GGATG	6 cut(s)	100, 187, 243, 409, 679, 739
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	78
CaiI	CAGNNNCTG	1 cut(s)	854
Cfr13I	GGNCC	4 cut(s)	25, 155, 205, 742
Csp6I	GTAC	3 cut(s)	60, 401, 712
CviAII	CATG	6 cut(s)	284, 395, 435, 660, 668, 684
CviJI	RGCY	9 cut(s)	27, 90, 212, 450, 467, 539, 593, 619, 697
CviKI_1	RGCY	9 cut(s)	27, 90, 212, 450, 467, 539, 593, 619, 697
CviQI	GTAC	3 cut(s)	60, 401, 712
DpnI	GATC	1 cut(s)	490
DpnII	GATC	1 cut(s)	488
Eco130I	CCWWGG	1 cut(s)	587
Eco47I	GGWCC	3 cut(s)	155, 205, 742
Eco57I	CTGAAG	1 cut(s)	501
Eco88I	CYCGRG	1 cut(s)	870
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRII	CCWGG	4 cut(s)	157, 207, 534, 692
EcoT14I	CCWWGG	1 cut(s)	587
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	587
FaeI	CATG	6 cut(s)	287, 398, 438, 663, 671, 687
FalI	AAGNNNNNCTT	2 cut(s)	571, 603
FatI	CATG	6 cut(s)	283, 394, 434, 659, 667, 683
Fnu4HI	GCNGC	1 cut(s)	594
FokI	GGATG	6 cut(s)	107, 174, 250, 396, 686, 746
Fsp4HI	GCNGC	1 cut(s)	594
FspBI	CTAG	5 cut(s)	45, 192, 464, 708, 716
GluI	GCNGC	1 cut(s)	594
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	27
Hin1II	CATG	6 cut(s)	287, 398, 438, 663, 671, 687
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HindIII	AAGCTT	2 cut(s)	88, 617
HinfI	GANTC	4 cut(s)	35, 224, 455, 551
HphI	GGTGA	2 cut(s)	317, 779
Hpy166II	GTNNAC	2 cut(s)	432, 800
Hpy188I	TCNGA	6 cut(s)	220, 454, 481, 550, 569, 746
Hpy188III	TCNNGA	1 cut(s)	84
Hpy8I	GTNNAC	2 cut(s)	432, 800
HpyAV	CCTTC	3 cut(s)	146, 733, 793
HpyCH4III	ACNGT	3 cut(s)	72, 148, 232
HpyCH4V	TGCA	8 cut(s)	4, 80, 336, 353, 425, 575, 596, 637
Hsp92II	CATG	6 cut(s)	287, 398, 438, 663, 671, 687
KpnI	GGTACC	1 cut(s)	715
Kzo9I	GATC	1 cut(s)	488
Lsp1109I	GCAGC	1 cut(s)	580
LweI	GCATC	4 cut(s)	89, 196, 208, 340
MaeI	CTAG	5 cut(s)	45, 192, 464, 708, 716
MaeIII	GTNAC	4 cut(s)	295, 469, 662, 679
MalI	GATC	1 cut(s)	490
MboI	GATC	1 cut(s)	488
MboII	GAAGA	3 cut(s)	257, 494, 899
MfeI	CAATTG	1 cut(s)	269
MflI	RGATCY	1 cut(s)	488
MluCI	AATT	4 cut(s)	99, 108, 137, 269
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	6 cut(s)	155, 188, 214, 596, 664, 826
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	804
MslI	CAYNNNNRTG	2 cut(s)	395, 672
MspR9I	CCNGG	4 cut(s)	159, 209, 536, 694
MunI	CAATTG	1 cut(s)	269
MvaI	CCWGG	4 cut(s)	159, 209, 536, 694
NdeII	GATC	1 cut(s)	488
NlaIII	CATG	6 cut(s)	287, 398, 438, 663, 671, 687
NlaIV	GGNNCC	3 cut(s)	259, 371, 713
NmuCI	GTSAC	3 cut(s)	295, 662, 679
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	3 cut(s)	438, 663, 687
PciI	ACATGT	1 cut(s)	659
PdmI	GAANNNNTTC	1 cut(s)	804
PfeI	GAWTC	3 cut(s)	35, 455, 551
PflMI	CCANNNNNTGG	1 cut(s)	380
PfoI	TCCNGGA	1 cut(s)	157
PkrI	GCNGC	1 cut(s)	595
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PpuMI	RGGWCCY	1 cut(s)	155
PscI	ACATGT	1 cut(s)	659
Psp5II	RGGWCCY	1 cut(s)	155
Psp6I	CCWGG	4 cut(s)	157, 207, 534, 692
PspGI	CCWGG	4 cut(s)	157, 207, 534, 692
PspN4I	GGNNCC	3 cut(s)	259, 371, 713
PspPI	GGNCC	4 cut(s)	25, 155, 205, 742
PspPPI	RGGWCCY	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	427
PstNI	CAGNNNCTG	1 cut(s)	854
PsuI	RGATCY	1 cut(s)	488
RsaI	GTAC	3 cut(s)	61, 402, 713
RsaNI	GTAC	3 cut(s)	60, 401, 712
RseI	CAYNNNNRTG	2 cut(s)	395, 672
SatI	GCNGC	1 cut(s)	594
Sau3AI	GATC	1 cut(s)	488
Sau96I	GGNCC	4 cut(s)	25, 155, 205, 742
ScaI	AGTACT	1 cut(s)	61
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	4 cut(s)	159, 209, 536, 694
SfaNI	GCATC	4 cut(s)	89, 196, 208, 340
SfcI	CTRYAG	2 cut(s)	228, 423
SinI	GGWCC	3 cut(s)	155, 205, 742
SmiMI	CAYNNNNRTG	2 cut(s)	395, 672
Sse9I	AATT	4 cut(s)	99, 108, 137, 269
SsiI	CCGC	1 cut(s)	731
SspMI	CTAG	5 cut(s)	45, 192, 464, 708, 716
StyD4I	CCNGG	4 cut(s)	157, 207, 534, 692
StyI	CCWWGG	1 cut(s)	587
TaaI	ACNGT	3 cut(s)	72, 148, 232
TasI	AATT	4 cut(s)	99, 108, 137, 269
TatI	WGTACW	1 cut(s)	59
TfiI	GAWTC	3 cut(s)	35, 455, 551
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	3 cut(s)	295, 662, 679
TseI	GCWGC	1 cut(s)	593
Tsp45I	GTSAC	3 cut(s)	295, 662, 679
TspDTI	ATGAA	1 cut(s)	383
TspRI	CASTG	1 cut(s)	343
Van91I	CCANNNNNTGG	1 cut(s)	380
VpaK11BI	GGWCC	3 cut(s)	155, 205, 742
XapI	RAATTY	2 cut(s)	108, 137
XceI	RCATGY	3 cut(s)	438, 663, 687
XcmI	CCANNNNNNNNNTGG	1 cut(s)	585
XmnI	GAANNNNTTC	1 cut(s)	804
XspI	CTAG	5 cut(s)	45, 192, 464, 708, 716
ZrmI	AGTACT	1 cut(s)	61
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.