pycom07g02840

Angio-associated migratory cell

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0001404
Physical Location & Seq
Reverse (-)
2380152 .. 2383707
3556 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g02840.9

Sequence Viewer

Length: 1080 bp
ATGACGAAGATCTTCCTGATGCAGATCGATCAAAGTGTTGATGAGCCTGATGACGATGATTCCATGCACACGTTCACCGGCCATAACGGTGAGCTTTACACAGTTGTCTGCAGCCCAACAGATCCTACTTTGGTTGCAACCGGTGGTGGAGATGACAGAGGGTTTCTTTGGAGAATTGGAGTAGGAGATTATGCTTTTGAGCTCCAAGGTCATAAGGATTCTGTTTCTAGTTTATCATTTAGTACTGATGGGCTGTTGCTTGCATCCGGAAGCTTGGATGGAATTATTCAAATTTGGGATGTAGCGAACGGAGTTCTGAAAAAAACTCTTGAAGGTCCTGGAGGGGGCATTGAGTGGGTCAGGTGGCATCCTAGGGGGCATCTGGTCCTGGCTGGTTCAGAGGACTGCACGGTCTGGATGTGGAATGCTGACAATGGTTCCTATCTTAATATGTTTTCAGGCCATGGTAGTAACGTGAGTTGTGGTGATTTTACCCCTGATGGTAAAACAATATGCACTGGTTCTGCTGATGCAACTTTGAGAATATGGAATCCAAAAAGTGGTGAAAACATTCATGTCATACAAGGTCACCCGTACCATACTGCTGGATTAACGTGTTTGGCAATAAGCTCTGATTCAACTCTAGCTTATACTGGTTCTGAAGATGGCTCTATCCATATCGTCAACATAACTACCGGAAAGGTTGTTAGTTCCCTATCTTCACATTCCGATTCTGTTGAATGCGTCGGGCTTGCACCAAGCTCTCCATGGGCTGCAACTGGAAGTATGGATAAGAAGCTTGTTATCTGGGATTTGCCTTCTTCGTCGGCCCGTGCTACATGTGAACATGAGGATGGAGTGACATGCTTGACATGGCTTGGTCAATCAAATTACCTAGCAACAGGTTGCGGGGATGGAAAGGTTCGAGTCTGGGATAGTCGATCTGGTGATTGTGTTAGAACCTTCAGTGGCCATACCGAAACCATTCAGTCTCTTTCCGTTTCTGCCAACCAAGAGTTTCTTGTTTCAGTATCTACTGACGGAACTGCCCGAGTTTTTGAGATTGCAGAATATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

360

Amino Acids

38.3

Weight (kDa)

4.71

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 410
AccB7I CCANNNNNTGG 1 cut(s) 560
AccIII TCCGGA 1 cut(s) 266
AciI CCGC 1 cut(s) 909
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 2 cut(s) 79, 970
AcsI RAATTY 1 cut(s) 291
AcuI CTGAAG 2 cut(s) 681, 949
AfaI GTAC 2 cut(s) 244, 596
AfiI CCNNNNNNNGG 2 cut(s) 344, 560
AflIII ACRYGT 3 cut(s) 69, 614, 839
AgeI ACCGGT 1 cut(s) 140
AgsI TTSAA 4 cut(s) 290, 332, 639, 740
AjnI CCWGG 2 cut(s) 337, 387
AluBI AGCT 7 cut(s) 94, 202, 273, 630, 647, 762, 799
AluI AGCT 7 cut(s) 94, 202, 273, 630, 647, 762, 799
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 996
AlwI GGATC 1 cut(s) 116
Ama87I CYCGRG 1 cut(s) 1050
Aor13HI TCCGGA 1 cut(s) 266
AoxI GGCC 4 cut(s) 79, 460, 828, 970
ApeKI GCWGC 2 cut(s) 111, 773
ApoI RAATTY 1 cut(s) 291
AsiGI ACCGGT 1 cut(s) 140
Asp700I GAANNNNTTC 3 cut(s) 11, 570, 984
AspA2I CCTAGG 1 cut(s) 371
AspS9I GGNCC 3 cut(s) 335, 385, 829
AsuHPI GGTGA 6 cut(s) 67, 101, 497, 575, 581, 959
AvaI CYCGRG 1 cut(s) 1050
AvaII GGWCC 2 cut(s) 335, 385
AvrII CCTAGG 1 cut(s) 371
BalI TGGCCA 1 cut(s) 972
BanII GRGCYC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 2 cut(s) 123, 760
BccI CCATC 6 cut(s) 242, 272, 494, 659, 848, 908
BciT130I CCWGG 2 cut(s) 339, 389
BcoDI GTCTC 1 cut(s) 996
BfaI CTAG 4 cut(s) 228, 372, 644, 896
BfmI CTRYAG 1 cut(s) 109
BglII AGATCT 1 cut(s) 9
BisI GCNGC 2 cut(s) 112, 774
BlnI CCTAGG 1 cut(s) 371
BlsI GCNGC 2 cut(s) 113, 775
BmcAI AGTACT 1 cut(s) 244
Bme1390I CCNGG 2 cut(s) 339, 389
Bme18I GGWCC 2 cut(s) 335, 385
BmeT110I CYCGRG 1 cut(s) 1050
BmgT120I GGNCC 3 cut(s) 335, 385, 829
BmiI GGNNCC 1 cut(s) 439
BmrFI CCNGG 2 cut(s) 339, 389
BmsI GCATC 5 cut(s) 9, 272, 376, 388, 520
BpmI CTGGAG 1 cut(s) 360
Bsa29I ATCGAT 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 23
BsaJI CCNNGG 4 cut(s) 205, 371, 463, 767
BsaWI WCCGGW 3 cut(s) 140, 266, 695
Bsc4I CCNNNNNNNGG 2 cut(s) 344, 560
Bse118I RCCGGY 2 cut(s) 77, 140
Bse1I ACTGG 3 cut(s) 523, 658, 784
Bse8I GATNNNNATC 1 cut(s) 23
BseAI TCCGGA 1 cut(s) 266
BseBI CCWGG 2 cut(s) 339, 389
BseCI ATCGAT 1 cut(s) 27
BseDI CCNNGG 4 cut(s) 205, 371, 463, 767
BseGI GGATG 7 cut(s) 263, 283, 304, 367, 423, 859, 919
BseJI GATNNNNATC 1 cut(s) 23
BseLI CCNNNNNNNGG 2 cut(s) 344, 560
BseNI ACTGG 3 cut(s) 523, 658, 784
BseXI GCAGC 2 cut(s) 123, 760
BsgI GTGCAG 1 cut(s) 391
BshFI GGCC 4 cut(s) 81, 462, 830, 972
BshTI ACCGGT 1 cut(s) 140
BshVI ATCGAT 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 1050
BsiSI CCGG 4 cut(s) 78, 141, 267, 696
BslI CCNNNNNNNGG 2 cut(s) 344, 560
BsmAI GTCTC 1 cut(s) 996
BsmI GAATGC 2 cut(s) 430, 746
BsnI GGCC 4 cut(s) 81, 462, 830, 972
BsoBI CYCGRG 1 cut(s) 1050
Bsp1286I GDGCHC 1 cut(s) 204
Bsp13I TCCGGA 1 cut(s) 266
Bsp143I GATC 5 cut(s) 9, 24, 28, 121, 941
Bsp19I CCATGG 2 cut(s) 463, 767
BspACI CCGC 1 cut(s) 909
BspANI GGCC 4 cut(s) 81, 462, 830, 972
BspDI ATCGAT 1 cut(s) 27
BspEI TCCGGA 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 439
BspMAI CTGCAG 1 cut(s) 113
BspPI GGATC 1 cut(s) 116
BsrFI RCCGGY 2 cut(s) 77, 140
BsrI ACTGG 3 cut(s) 523, 658, 784
BssAI RCCGGY 2 cut(s) 77, 140
BssECI CCNNGG 4 cut(s) 205, 371, 463, 767
BssMI GATC 5 cut(s) 9, 24, 28, 121, 941
BssT1I CCWWGG 4 cut(s) 205, 371, 463, 767
Bst2UI CCWGG 2 cut(s) 339, 389
Bst4CI ACNGT 3 cut(s) 89, 103, 412
BstC8I GCNNGC 2 cut(s) 261, 753
BstDSI CCRYGG 2 cut(s) 463, 767
BstEII GGTNACC 1 cut(s) 587
BstF5I GGATG 7 cut(s) 263, 283, 304, 367, 423, 859, 919
BstKTI GATC 5 cut(s) 12, 27, 31, 124, 944
BstMAI GTCTC 1 cut(s) 996
BstMBI GATC 5 cut(s) 9, 24, 28, 121, 941
BstNI CCWGG 2 cut(s) 339, 389
BstNSI RCATGY 2 cut(s) 843, 867
BstPI GGTNACC 1 cut(s) 587
BstSCI CCNGG 2 cut(s) 337, 387
BstSFI CTRYAG 1 cut(s) 109
BstV1I GCAGC 2 cut(s) 123, 760
BstX2I RGATCY 2 cut(s) 9, 121
BstXI CCANNNNNNTGG 1 cut(s) 605
BstYI RGATCY 2 cut(s) 9, 121
Bsu15I ATCGAT 1 cut(s) 27
BsuRI GGCC 4 cut(s) 81, 462, 830, 972
BsuTUI ATCGAT 1 cut(s) 27
BtgI CCRYGG 2 cut(s) 463, 767
BtsCI GGATG 7 cut(s) 263, 283, 304, 367, 423, 859, 919
BtsIMutI CAGTG 2 cut(s) 516, 973
Cac8I GCNNGC 2 cut(s) 261, 753
Cfr10I RCCGGY 2 cut(s) 77, 140
Cfr13I GGNCC 3 cut(s) 335, 385, 829
ClaI ATCGAT 1 cut(s) 27
CseI GACGC 1 cut(s) 733
Csp6I GTAC 2 cut(s) 243, 595
CspAI ACCGGT 1 cut(s) 140
CviAII CATG 8 cut(s) 64, 464, 575, 768, 840, 848, 864, 873
CviQI GTAC 2 cut(s) 243, 595
DpnI GATC 5 cut(s) 11, 26, 30, 123, 943
DpnII GATC 5 cut(s) 9, 24, 28, 121, 941
DrdI GACNNNNNNGTC 1 cut(s) 410
DseDI GACNNNNNNGTC 1 cut(s) 410
EaeI YGGCCR 2 cut(s) 79, 970
Ecl136II GAGCTC 1 cut(s) 202
Eco130I CCWWGG 4 cut(s) 205, 371, 463, 767
Eco24I GRGCYC 1 cut(s) 204
Eco47I GGWCC 2 cut(s) 335, 385
Eco53kI GAGCTC 1 cut(s) 202
Eco57I CTGAAG 2 cut(s) 681, 949
Eco88I CYCGRG 1 cut(s) 1050
Eco91I GGTNACC 1 cut(s) 587
EcoICRI GAGCTC 1 cut(s) 202
EcoO109I RGGNCCY 1 cut(s) 335
EcoO65I GGTNACC 1 cut(s) 587
EcoRII CCWGG 2 cut(s) 337, 387
EcoT14I CCWWGG 4 cut(s) 205, 371, 463, 767
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 4 cut(s) 205, 371, 463, 767
FaeI CATG 8 cut(s) 67, 467, 578, 771, 843, 851, 867, 876
FalI AAGNNNNNCTT 2 cut(s) 1005, 1037
FatI CATG 8 cut(s) 63, 463, 574, 767, 839, 847, 863, 872
FauI CCCGC 1 cut(s) 902
Fnu4HI GCNGC 2 cut(s) 112, 774
FokI GGATG 7 cut(s) 250, 290, 311, 354, 430, 866, 926
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 2 cut(s) 112, 774
FspBI CTAG 4 cut(s) 228, 372, 644, 896
GluI GCNGC 2 cut(s) 112, 774
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 4 cut(s) 81, 462, 830, 972
HapII CCGG 4 cut(s) 78, 141, 267, 696
HgaI GACGC 1 cut(s) 733
Hin1II CATG 8 cut(s) 67, 467, 578, 771, 843, 851, 867, 876
HincII GTYRAC 1 cut(s) 685
HindII GTYRAC 1 cut(s) 685
HindIII AAGCTT 2 cut(s) 271, 797
HinfI GANTC 6 cut(s) 59, 218, 550, 635, 731, 927
HpaII CCGG 4 cut(s) 78, 141, 267, 696
HphI GGTGA 6 cut(s) 67, 101, 497, 575, 581, 959
Hpy166II GTNNAC 3 cut(s) 75, 685, 845
Hpy188I TCNGA 5 cut(s) 318, 400, 634, 661, 730
Hpy188III TCNNGA 4 cut(s) 16, 267, 329, 415
Hpy8I GTNNAC 3 cut(s) 75, 685, 845
Hpy99I CGWCG 2 cut(s) 749, 829
HpyAV CCTTC 3 cut(s) 326, 828, 973
HpyCH4III ACNGT 3 cut(s) 89, 103, 412
HpyCH4IV ACGT 3 cut(s) 71, 474, 614
HpySE526I ACGT 3 cut(s) 71, 474, 614
Hsp92II CATG 8 cut(s) 67, 467, 578, 771, 843, 851, 867, 876
Kpn2I TCCGGA 1 cut(s) 266
Kzo9I GATC 5 cut(s) 9, 24, 28, 121, 941
LmnI GCTCC 1 cut(s) 207
Lsp1109I GCAGC 2 cut(s) 123, 760
LweI GCATC 5 cut(s) 9, 272, 376, 388, 520
MaeI CTAG 4 cut(s) 228, 372, 644, 896
MaeII ACGT 3 cut(s) 71, 474, 614
MaeIII GTNAC 3 cut(s) 470, 587, 859
MalI GATC 5 cut(s) 11, 26, 30, 123, 943
MboI GATC 5 cut(s) 9, 24, 28, 121, 941
MboII GAAGA 5 cut(s) 4, 19, 674, 711, 813
MflI RGATCY 2 cut(s) 9, 121
MhlI GDGCHC 1 cut(s) 204
MlsI TGGCCA 1 cut(s) 972
MluCI AATT 4 cut(s) 174, 282, 291, 889
MluNI TGGCCA 1 cut(s) 972
MlyI GAGTC 1 cut(s) 936
MnlI CCTC 4 cut(s) 152, 335, 394, 844
Mox20I TGGCCA 1 cut(s) 972
MroI TCCGGA 1 cut(s) 266
MroXI GAANNNNTTC 3 cut(s) 11, 570, 984
MscI TGGCCA 1 cut(s) 972
MseI TTAA 2 cut(s) 447, 611
MslI CAYNNNNRTG 2 cut(s) 87, 852
Msp20I TGGCCA 1 cut(s) 972
MspI CCGG 4 cut(s) 78, 141, 267, 696
MspR9I CCNGG 2 cut(s) 339, 389
Mva1269I GAATGC 2 cut(s) 430, 746
MvaI CCWGG 2 cut(s) 339, 389
NcoI CCATGG 2 cut(s) 463, 767
NdeII GATC 5 cut(s) 9, 24, 28, 121, 941
NlaIII CATG 8 cut(s) 67, 467, 578, 771, 843, 851, 867, 876
NlaIV GGNNCC 1 cut(s) 439
NmuCI GTSAC 2 cut(s) 587, 859
NspI RCATGY 2 cut(s) 843, 867
PciI ACATGT 1 cut(s) 839
PctI GAATGC 2 cut(s) 430, 746
PdmI GAANNNNTTC 3 cut(s) 11, 570, 984
PfeI GAWTC 5 cut(s) 59, 218, 550, 635, 731
PflMI CCANNNNNTGG 1 cut(s) 560
PfoI TCCNGGA 1 cut(s) 337
PinAI ACCGGT 1 cut(s) 140
PkrI GCNGC 2 cut(s) 113, 775
PleI GAGTC 1 cut(s) 935
PpsI GAGTC 1 cut(s) 935
PpuMI RGGWCCY 1 cut(s) 335
PscI ACATGT 1 cut(s) 839
Psp124BI GAGCTC 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 335
Psp6I CCWGG 2 cut(s) 337, 387
PspEI GGTNACC 1 cut(s) 587
PspGI CCWGG 2 cut(s) 337, 387
PspN4I GGNNCC 1 cut(s) 439
PspPI GGNCC 3 cut(s) 335, 385, 829
PspPPI RGGWCCY 1 cut(s) 335
PstI CTGCAG 1 cut(s) 113
PsuI RGATCY 2 cut(s) 9, 121
RsaI GTAC 2 cut(s) 244, 596
RsaNI GTAC 2 cut(s) 243, 595
RseI CAYNNNNRTG 2 cut(s) 87, 852
SacI GAGCTC 1 cut(s) 204
SaqAI TTAA 2 cut(s) 447, 611
SatI GCNGC 2 cut(s) 112, 774
Sau3AI GATC 5 cut(s) 9, 24, 28, 121, 941
Sau96I GGNCC 3 cut(s) 335, 385, 829
ScaI AGTACT 1 cut(s) 244
SchI GAGTC 1 cut(s) 936
ScrFI CCNGG 2 cut(s) 339, 389
SduI GDGCHC 1 cut(s) 204
SfaNI GCATC 5 cut(s) 9, 272, 376, 388, 520
SfcI CTRYAG 1 cut(s) 109
SinI GGWCC 2 cut(s) 335, 385
SmiMI CAYNNNNRTG 2 cut(s) 87, 852
Sse9I AATT 4 cut(s) 174, 282, 291, 889
SsiI CCGC 1 cut(s) 909
SspMI CTAG 4 cut(s) 228, 372, 644, 896
SstI GAGCTC 1 cut(s) 204
StyD4I CCNGG 2 cut(s) 337, 387
StyI CCWWGG 4 cut(s) 205, 371, 463, 767
TaaI ACNGT 3 cut(s) 89, 103, 412
TaiI ACGT 3 cut(s) 74, 477, 617
TaqI TCGA 3 cut(s) 27, 925, 940
TasI AATT 4 cut(s) 174, 282, 291, 889
TatI WGTACW 1 cut(s) 242
TfiI GAWTC 5 cut(s) 59, 218, 550, 635, 731
Tru1I TTAA 2 cut(s) 447, 611
Tru9I TTAA 2 cut(s) 447, 611
TscAI CASTG 2 cut(s) 523, 973
TseFI GTSAC 2 cut(s) 587, 859
TseI GCWGC 2 cut(s) 111, 773
Tsp45I GTSAC 2 cut(s) 587, 859
TspDTI ATGAA 1 cut(s) 563
TspGWI ACGGA 3 cut(s) 324, 988, 1056
TspRI CASTG 2 cut(s) 523, 973
Van91I CCANNNNNTGG 1 cut(s) 560
VpaK11BI GGWCC 2 cut(s) 335, 385
XapI RAATTY 1 cut(s) 291
XceI RCATGY 2 cut(s) 843, 867
XcmI CCANNNNNNNNNTGG 1 cut(s) 765
XmaJI CCTAGG 1 cut(s) 371
XmnI GAANNNNTTC 3 cut(s) 11, 570, 984
XspI CTAG 4 cut(s) 228, 372, 644, 896
ZrmI AGTACT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.