Rh2AG361700

Angio-associated migratory cell

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001404
Physical Location & Seq
Forward (+)
53596953 .. 53606604
9652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG361700.1

Sequence Viewer

Length: 372 bp
ATGCATCGCAGCGGAACCGGTAAAATTGATTGCCTCCCGAAAGATGGGCCTGATGATTCCATGCATACTTTTACTGGTCATACGGGTGAACTTTATACAGTTGTCTGCAGTTCGACAGATCCAGTGTTAGTTGCAACAGGGGGTGGAGATGACAGAGGGTTTCTTTGGAAGATTGGACAAGGAGATTGGGCTTCTGAGGTCCAAGATTATCTGAAATTTATTCTGGACCATGTGACTTCTCAGTGGGTCAGGTGGCATCCTAGAGGGTATCTGGTCTTGGCTGACATTCCAAGCTTCGACAAACCTCATTTCTATCGCTATCATCTTTTTATTTTACATCACGAAAACATAACAGAGACAAATAATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

123

Amino Acids

14.03

Weight (kDa)

5.76

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 12
AclWI GGATC 1 cut(s) 113
AcsI RAATTY 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 44
AgeI ACCGGT 1 cut(s) 17
AluBI AGCT 1 cut(s) 294
AluI AGCT 1 cut(s) 294
Alw26I GTCTC 1 cut(s) 350
AlwI GGATC 1 cut(s) 113
AoxI GGCC 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 9
ApoI RAATTY 1 cut(s) 215
AsiGI ACCGGT 1 cut(s) 17
AspS9I GGNCC 3 cut(s) 47, 199, 226
AsuHPI GGTGA 1 cut(s) 98
AvaII GGWCC 2 cut(s) 199, 226
BbvI GCAGC 1 cut(s) 21
BccI CCATC 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 106
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
Bme18I GGWCC 2 cut(s) 199, 226
BmgT120I GGNCC 3 cut(s) 47, 199, 226
BmiI GGNNCC 1 cut(s) 16
BmsI GCATC 2 cut(s) 13, 265
BsaWI WCCGGW 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse118I RCCGGY 1 cut(s) 17
Bse1I ACTGG 2 cut(s) 79, 122
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 2 cut(s) 186, 254
BseNI ACTGG 2 cut(s) 79, 122
BseXI GCAGC 1 cut(s) 21
BshFI GGCC 1 cut(s) 49
BshTI ACCGGT 1 cut(s) 17
BsiSI CCGG 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 350
BsnI GGCC 1 cut(s) 49
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 1 cut(s) 12
BspANI GGCC 1 cut(s) 49
BspCNI CTCAG 2 cut(s) 187, 253
BspLI GGNNCC 1 cut(s) 16
BspMAI CTGCAG 1 cut(s) 110
BspPI GGATC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 17
BsrI ACTGG 2 cut(s) 79, 122
BssAI RCCGGY 1 cut(s) 17
BssMI GATC 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 100
BstDEI CTNAG 2 cut(s) 195, 240
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuRI GGCC 1 cut(s) 49
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 2 cut(s) 129, 248
Cfr10I RCCGGY 1 cut(s) 17
Cfr13I GGNCC 3 cut(s) 47, 199, 226
CspAI ACCGGT 1 cut(s) 17
CviAII CATG 2 cut(s) 61, 230
CviJI RGCY 4 cut(s) 49, 191, 281, 294
CviKI_1 RGCY 4 cut(s) 49, 191, 281, 294
DdeI CTNAG 2 cut(s) 195, 240
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eco47I GGWCC 2 cut(s) 199, 226
EcoT22I ATGCAT 2 cut(s) 6, 66
FaeI CATG 2 cut(s) 64, 233
FaiI YATR 6 cut(s) 62, 66, 81, 96, 231, 350
FatI CATG 2 cut(s) 60, 229
Fnu4HI GCNGC 1 cut(s) 10
FokI GGATG 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 10
FspBI CTAG 1 cut(s) 261
GluI GCNGC 1 cut(s) 10
HaeIII GGCC 1 cut(s) 49
HapII CCGG 1 cut(s) 18
Hin1II CATG 2 cut(s) 64, 233
HindIII AAGCTT 1 cut(s) 292
HinfI GANTC 1 cut(s) 56
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 2 cut(s) 196, 213
Hpy188III TCNNGA 3 cut(s) 37, 224, 341
Hpy8I GTNNAC 1 cut(s) 89
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 4 cut(s) 4, 64, 108, 134
HpyF3I CTNAG 2 cut(s) 195, 240
Hsp92II CATG 2 cut(s) 64, 233
Kzo9I GATC 1 cut(s) 118
LpnPI CCDG 8 cut(s) 31, 60, 63, 123, 135, 209, 235, 257
Lsp1109I GCAGC 1 cut(s) 21
LweI GCATC 2 cut(s) 13, 265
MaeI CTAG 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 232
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 1 cut(s) 181
MflI RGATCY 1 cut(s) 118
MluCI AATT 2 cut(s) 24, 215
MnlI CCTC 5 cut(s) 44, 149, 190, 257, 315
Mph1103I ATGCAT 2 cut(s) 6, 66
MseI TTAA 1 cut(s) 370
MslI CAYNNNNRTG 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 1 cut(s) 18
NdeII GATC 1 cut(s) 118
NlaIII CATG 2 cut(s) 64, 233
NlaIV GGNNCC 1 cut(s) 16
NmuCI GTSAC 1 cut(s) 232
NsiI ATGCAT 2 cut(s) 6, 66
PfeI GAWTC 1 cut(s) 56
PinAI ACCGGT 1 cut(s) 17
PkrI GCNGC 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 3 cut(s) 47, 199, 226
PstI CTGCAG 1 cut(s) 110
PsuI RGATCY 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 1 cut(s) 370
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 3 cut(s) 47, 199, 226
SetI ASST 4 cut(s) 201, 254, 296, 307
SfaNI GCATC 2 cut(s) 13, 265
SfcI CTRYAG 1 cut(s) 106
SinI GGWCC 2 cut(s) 199, 226
SmiMI CAYNNNNRTG 1 cut(s) 84
Sse9I AATT 2 cut(s) 24, 215
SsiI CCGC 1 cut(s) 12
SspI AATATT 1 cut(s) 367
SspMI CTAG 1 cut(s) 261
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 2 cut(s) 113, 297
TasI AATT 2 cut(s) 24, 215
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 1 cut(s) 370
Tru9I TTAA 1 cut(s) 370
TscAI CASTG 2 cut(s) 129, 248
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 1 cut(s) 9
Tsp45I GTSAC 1 cut(s) 232
TspRI CASTG 2 cut(s) 129, 248
VpaK11BI GGWCC 2 cut(s) 199, 226
XapI RAATTY 1 cut(s) 215
XspI CTAG 1 cut(s) 261
Zsp2I ATGCAT 2 cut(s) 6, 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.