Rh3DG184200

Angio-associated migratory cell

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001404
Physical Location & Seq
Forward (+)
16324965 .. 16339840
14876 bp
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UTR
Exon/CDS
Intron
Rh3DG184200.1

Sequence Viewer

Length: 273 bp
ATGACGCGGTCAACGGAGATCATCACCTGTGAAGACCCCGATGAAGGTCCCGAAGTCGCTGTTAAAGTTGTCTGCAGTCCGACAGATCCAGTGTTAGTTGCAACAGGGGGTGGAGATGACACAGGGTTTCTTTGGAAGATTGGACAAGGAGATTGGGCTTCTGAGCTAGAAGGCCATAAGGATTCTGTTTCAAGCTTAGCATTTAGTACTGATGGACAGTTGCTTTCAGCTGAAACAGATTTTGATTTCTCTTCCAGATTGCCTGATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

90

Amino Acids

9.55

Weight (kDa)

4.05

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 7 - 77 9.6e-07 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 15 - 80 1.8e-07 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 22 - 78 1.7e-06 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 31 - 76 6.2e-07 WDR5 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 7
AciI CCGC 1 cut(s) 7
AclWI GGATC 1 cut(s) 80
AfaI GTAC 1 cut(s) 208
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 1 cut(s) 192
AluBI AGCT 3 cut(s) 166, 195, 230
AluI AGCT 3 cut(s) 166, 195, 230
AlwI GGATC 1 cut(s) 80
AoxI GGCC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 39
BccI CCATC 1 cut(s) 206
BfaI CTAG 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 73
BlpI GCTNAGC 1 cut(s) 196
BmcAI AGTACT 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 1 cut(s) 174
BslFI GGGAC 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 33
BsnI GGCC 1 cut(s) 174
Bsp143I GATC 2 cut(s) 18, 85
Bsp1720I GCTNAGC 1 cut(s) 196
BspACI CCGC 1 cut(s) 7
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 1 cut(s) 154
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 49
BspMAI CTGCAG 1 cut(s) 77
BspPI GGATC 1 cut(s) 80
BsrI ACTGG 1 cut(s) 89
BssMI GATC 2 cut(s) 18, 85
Bst4CI ACNGT 1 cut(s) 219
Bst6I CTCTTC 1 cut(s) 256
BstDEI CTNAG 2 cut(s) 162, 196
BstFNI CGCG 1 cut(s) 7
BstKTI GATC 2 cut(s) 21, 88
BstMBI GATC 2 cut(s) 18, 85
BstSFI CTRYAG 1 cut(s) 73
BstUI CGCG 1 cut(s) 7
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BsuRI GGCC 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 47
CseI GACGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 207
CviJI RGCY 5 cut(s) 158, 166, 174, 195, 230
CviKI_1 RGCY 5 cut(s) 158, 166, 174, 195, 230
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 2 cut(s) 162, 196
DpnI GATC 2 cut(s) 20, 87
DpnII GATC 2 cut(s) 18, 85
Eam1104I CTCTTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 256
Eco47I GGWCC 1 cut(s) 47
EcoO109I RGGNCCY 1 cut(s) 47
FaiI YATR 2 cut(s) 177, 271
FaqI GGGAC 1 cut(s) 33
FspBI CTAG 1 cut(s) 167
HaeIII GGCC 1 cut(s) 174
HgaI GACGC 1 cut(s) 13
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 193
HinfI GANTC 1 cut(s) 182
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 2 cut(s) 81, 163
Hpy188III TCNNGA 2 cut(s) 50, 255
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 2 cut(s) 38, 164
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4V TGCA 2 cut(s) 75, 101
HpyF3I CTNAG 2 cut(s) 162, 196
Kzo9I GATC 2 cut(s) 18, 85
LpnPI CCDG 5 cut(s) 40, 90, 102, 108, 268
MaeI CTAG 1 cut(s) 167
MalI GATC 2 cut(s) 20, 87
MboI GATC 2 cut(s) 18, 85
MboII GAAGA 3 cut(s) 44, 148, 243
MflI RGATCY 1 cut(s) 85
MmeI TCCRAC 1 cut(s) 104
MseI TTAA 1 cut(s) 63
MspA1I CMGCKG 1 cut(s) 230
MvnI CGCG 1 cut(s) 7
NdeII GATC 2 cut(s) 18, 85
NlaIV GGNNCC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 182
PflFI GACNNNGTC 1 cut(s) 7
PpuMI RGGWCCY 1 cut(s) 47
Psp5II RGGWCCY 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 47
PspPPI RGGWCCY 1 cut(s) 47
PstI CTGCAG 1 cut(s) 77
PsuI RGATCY 1 cut(s) 85
PsyI GACNNNGTC 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 63
Sau3AI GATC 2 cut(s) 18, 85
Sau96I GGNCC 1 cut(s) 47
ScaI AGTACT 1 cut(s) 208
SetI ASST 5 cut(s) 29, 49, 168, 197, 232
SfcI CTRYAG 1 cut(s) 73
SinI GGWCC 1 cut(s) 47
SsiI CCGC 1 cut(s) 7
SspMI CTAG 1 cut(s) 167
TaaI ACNGT 1 cut(s) 219
TatI WGTACW 1 cut(s) 206
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 96
TspDTI ATGAA 1 cut(s) 57
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 1 cut(s) 96
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 1 cut(s) 47
XspI CTAG 1 cut(s) 167
ZrmI AGTACT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.