Rh7CG268900

Angio-associated migratory cell

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001404
Physical Location & Seq
Reverse (-)
26444158 .. 26449721
5564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG268900.1

Sequence Viewer

Length: 1041 bp
ATGTGCGTTGTAAACAAGTTTGATGAGAACAACCCTAATAACATCGCAAATTTGAGGACAAACTATGGAAGATCCACAAGCCCGACAGATACTGCTTTGGTTGCAACAGGGGGTAAAGATGACAGAGGGTTTCTTTGGAAGATTGGACACGGAGATTGGGCTTTTGAGCTTCAAGGTCATAAGGATTCTGTTTCTAGCTTAGCATTTAGTACTGATGGACAGTTGCTAGCATCTGGAAGCTTGGATGGAATCATCCAAATTTGGGATATAGCATCAGGAAATCTAAAATCTACTTTAGAAGGTCCTGGTGGGGGAATTGAGTGGATCAAGTGGCATCCTAGAGGTCATGTGGTTTTGGCTGGTTCAGAAGACTCTGCAGTTTGGATGTGGAATGCTGACAATGGTTCCTATCTTAATTTATTTTCTGGTCATGGTGGTAGGGTGAGTTGTGGTGACTTTACCCCTGATGGAAAAACAATCTGCACTGGTTCTGCTGATACAACTTTGAGAATATGGAATCCAAAAAGTGGCGAGAGCATTCATGTGGTACAAGGTCACCCATACCATACTACAGGATTGACATGTTTGACAATAAGTTCTGATTCAACTTTAGCTGTTACTGGTTCTGAAGATGGTTCTGTCTATATTGTAAACATAACAACTGGAAAGGTTGTTAGTTCCCTGGTTTCACATTTAGATTCAGTTGAATGTATCGGGCTTGCACCAAGCTCCCCTTGGGCTGCAACTGGAGGTATGGATAAGAAGCTTATAATTTGGGACTTGCAGCATTCATTGCCCCGTTGTACCTGCGAACATGAGGATGGAGTGACATGTTTGACATGGCTGGGCACATCCAGATATCTAGCAACAGGCTGTATGGATGGGAAGGTTCGGTTATGGGATAGTCTCTCTGGTGATTGCGTAAGAACCTTGAATGGGCACAATGAGCCCATTCAGTCTCTCTCTGTATCTGCCAACCAAGAGTTCCTTGTTTCAGTATCTACTGATGGAACTGCCCGAGTTTTTGAGTTACATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

346

Amino Acids

37.04

Weight (kDa)

5.21

Isoelectric Point (pI)

33.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 8 - 139 4.1e-12 CDC20/Fizzy WD40 domain
NBCH_WD40 PF20426 23 - 94 2.8e-06 Neurobeachin beta propeller domain
WDR55 PF24796 24 - 203 9.5e-13 WDR55
Beta-prop_EML PF23409 26 - 133 8.4e-06 Echinoderm microtubule-associated protein first beta-propeller
WD40_WDHD1_1st PF24817 26 - 99 1.3e-09 WDHD1 first WD40 domain
WD40_Prp19 PF24814 27 - 187 2.6e-25 Prp19 WD40 domain
Beta-prop_EML_2 PF23414 29 - 93 5.9e-06 Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta PF25391 30 - 127 1.5e-10 G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st PF25173 30 - 173 1.1e-28 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 31 - 99 6.1e-15 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 32 - 118 1.5e-14 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 32 - 133 5.8e-08 WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_2nd PF25172 55 - 173 1.5e-18 WDR3 second beta-propeller domain
Beta-prop_TEP1_2nd PF25047 55 - 149 1.7e-09 TEP-1 second beta-propeller
WD40 PF00400 56 - 89 5.4e-11 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 57 - 186 1.3e-34 WDR5 beta-propeller domain
Beta-prop_EML PF23409 58 - 218 6.1e-12 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR19_1st PF23389 61 - 183 1.2e-07 WDR19 first beta-propeller
Beta-prop_Aladin PF25460 61 - 160 1.2e-08 Aladin seven-bladed propeller
EIF3I PF24805 99 - 184 1.9e-12 EIF3I
Beta-prop_THOC3 PF25174 103 - 186 8.7e-15 THOC3 beta-propeller domain
WD40_Gbeta PF25391 105 - 173 1.2e-08 G protein beta WD-40 repeat protein
Beta-prop_CAF1B_HIR1 PF24105 106 - 183 9.7e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_Aladin PF25460 107 - 175 5.8e-06 Aladin seven-bladed propeller
WD40_CDC20-Fz PF24807 108 - 271 5.3e-17 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 109 - 187 1.3e-08 WDHD1 first WD40 domain
Beta-prop_EML_2 PF23414 111 - 231 7.2e-12 Echinoderm microtubule-associated protein second beta-propeller
WD40 PF00400 137 - 173 2.1e-08 WD domain, G-beta repeat
Beta-prop_TEP1_2nd PF25047 141 - 234 5.7e-09 TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 160 - 282 8.2e-11 WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_1st PF25173 170 - 344 1.3e-30 WDR3 first beta-propeller domain
WD40 PF00400 177 - 216 5.2e-06 WD domain, G-beta repeat
WD40_Gbeta PF25391 180 - 299 2.9e-07 G protein beta WD-40 repeat protein
WD40_Prp19 PF24814 186 - 295 2.6e-13 Prp19 WD40 domain
EIF3I PF24805 189 - 344 1.5e-11 EIF3I
Beta-prop_WDR5 PF25175 189 - 344 3.7e-30 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 190 - 264 2.4e-07 WDHD1 first WD40 domain
Beta-prop_WDR3_2nd PF25172 190 - 260 9e-08 WDR3 second beta-propeller domain
NBCH_WD40 PF20426 192 - 263 9.5e-07 Neurobeachin beta propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 193 - 345 4.4e-14 WDR36/Utp21 second beta-propeller domain
Beta-prop_ACSF4 PF13570 197 - 342 2.9e-08 Beta-alanine-activating enzyme, beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 207 - 337 3.8e-12 WDR36/Utp21 first beta-propeller
Beta-prop_TEP1_2nd PF25047 226 - 344 2.3e-15 TEP-1 second beta-propeller
Beta-prop_EML_2 PF23414 240 - 344 1.2e-12 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd PF25172 248 - 343 9.6e-13 WDR3 second beta-propeller domain
WDR55 PF24796 271 - 345 3e-09 WDR55
WD40_CDC20-Fz PF24807 271 - 344 1e-09 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 271 - 344 2.2e-13 THOC3 beta-propeller domain
WD40 PF00400 271 - 301 1.3e-08 WD domain, G-beta repeat
Beta-prop_DCAF4 PF23761 271 - 345 6.7e-07 DDB1- and CUL4-associated factor 4 beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 272 - 344 7.2e-07 CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st PF24817 275 - 345 1.5e-10 WDHD1 first WD40 domain
WD40_MABP1-WDR62_2nd PF24782 284 - 342 2e-08 MABP1/WDR62 second WD40 domain
WD40 PF00400 305 - 342 3.7e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 770
Acc36I ACCTGC 1 cut(s) 815
AccB7I CCANNNNNTGG 1 cut(s) 527
AclWI GGATC 2 cut(s) 66, 332
AcsI RAATTY 2 cut(s) 49, 258
AcuI CTGAAG 1 cut(s) 648
AfaI GTAC 3 cut(s) 211, 549, 805
AfiI CCNNNNNNNGG 4 cut(s) 262, 311, 527, 936
AflIII ACRYGT 2 cut(s) 581, 830
AgsI TTSAA 4 cut(s) 173, 606, 707, 934
AjnI CCWGG 2 cut(s) 304, 681
AjuI GAANNNNNNNTTGG 2 cut(s) 968, 1000
AluBI AGCT 6 cut(s) 169, 198, 240, 614, 729, 766
AluI AGCT 6 cut(s) 169, 198, 240, 614, 729, 766
Alw26I GTCTC 2 cut(s) 911, 963
AlwI GGATC 2 cut(s) 66, 332
AlwNI CAGNNNCTG 1 cut(s) 92
Ama87I CYCGRG 1 cut(s) 1017
ApeKI GCWGC 2 cut(s) 740, 784
ApoI RAATTY 2 cut(s) 49, 258
AspS9I GGNCC 1 cut(s) 302
AsuHPI GGTGA 4 cut(s) 454, 464, 548, 926
AsuNHI GCTAGC 1 cut(s) 226
AvaI CYCGRG 1 cut(s) 1017
AvaII GGWCC 1 cut(s) 302
BaeGI GKGCMC 2 cut(s) 851, 942
BanII GRGCYC 1 cut(s) 951
BbsI GAAGAC 1 cut(s) 375
BbvI GCAGC 2 cut(s) 727, 796
BccI CCATC 7 cut(s) 209, 239, 461, 626, 815, 875, 1001
BciT130I CCWGG 2 cut(s) 306, 683
BcoDI GTCTC 2 cut(s) 911, 963
BfaI CTAG 4 cut(s) 195, 227, 339, 863
BfmI CTRYAG 2 cut(s) 375, 570
BfuAI ACCTGC 1 cut(s) 815
BisI GCNGC 2 cut(s) 741, 785
BlpI GCTNAGC 1 cut(s) 199
BlsI GCNGC 2 cut(s) 742, 786
BmcAI AGTACT 1 cut(s) 211
Bme1390I CCNGG 2 cut(s) 306, 683
Bme18I GGWCC 1 cut(s) 302
BmeT110I CYCGRG 1 cut(s) 1017
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 1 cut(s) 406
BmrFI CCNGG 2 cut(s) 306, 683
BmsI GCATC 3 cut(s) 239, 281, 343
BmtI GCTAGC 1 cut(s) 230
BpiI GAAGAC 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 768
Bpu1102I GCTNAGC 1 cut(s) 199
BsaJI CCNNGG 2 cut(s) 681, 734
Bsc4I CCNNNNNNNGG 4 cut(s) 262, 311, 527, 936
Bse1I ACTGG 4 cut(s) 490, 625, 667, 751
Bse3DI GCAATG 1 cut(s) 791
BseBI CCWGG 2 cut(s) 306, 683
BseDI CCNNGG 2 cut(s) 681, 734
BseGI GGATG 7 cut(s) 250, 252, 334, 390, 826, 851, 886
BseLI CCNNNNNNNGG 4 cut(s) 262, 311, 527, 936
BseMI GCAATG 1 cut(s) 791
BseNI ACTGG 4 cut(s) 490, 625, 667, 751
BseSI GKGCMC 2 cut(s) 851, 942
BseXI GCAGC 2 cut(s) 727, 796
BseYI CCCAGC 1 cut(s) 844
BsgI GTGCAG 1 cut(s) 466
BsiHKCI CYCGRG 1 cut(s) 1017
BslFI GGGAC 1 cut(s) 791
BslI CCNNNNNNNGG 4 cut(s) 262, 311, 527, 936
BsmAI GTCTC 2 cut(s) 911, 963
BsmFI GGGAC 1 cut(s) 791
BsmI GAATGC 3 cut(s) 397, 537, 787
BsoBI CYCGRG 1 cut(s) 1017
Bsp1286I GDGCHC 3 cut(s) 851, 942, 951
Bsp143I GATC 2 cut(s) 71, 324
Bsp1720I GCTNAGC 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 406
BspMAI CTGCAG 1 cut(s) 379
BspMI ACCTGC 1 cut(s) 815
BspOI GCTAGC 1 cut(s) 230
BspPI GGATC 2 cut(s) 66, 332
BsrDI GCAATG 1 cut(s) 791
BsrI ACTGG 4 cut(s) 490, 625, 667, 751
BssECI CCNNGG 2 cut(s) 681, 734
BssMI GATC 2 cut(s) 71, 324
BssT1I CCWWGG 1 cut(s) 734
Bst2UI CCWGG 2 cut(s) 306, 683
Bst4CI ACNGT 1 cut(s) 222
BstAPI GCANNNNNTGC 1 cut(s) 793
BstC8I GCNNGC 2 cut(s) 228, 720
BstDEI CTNAG 1 cut(s) 199
BstEII GGTNACC 1 cut(s) 554
BstF5I GGATG 7 cut(s) 250, 252, 334, 390, 826, 851, 886
BstKTI GATC 2 cut(s) 74, 327
BstMAI GTCTC 2 cut(s) 911, 963
BstMBI GATC 2 cut(s) 71, 324
BstMWI GCNNNNNNNGC 3 cut(s) 101, 793, 946
BstNI CCWGG 2 cut(s) 306, 683
BstNSI RCATGY 2 cut(s) 585, 834
BstPI GGTNACC 1 cut(s) 554
BstSCI CCNGG 2 cut(s) 304, 681
BstSFI CTRYAG 2 cut(s) 375, 570
BstSLI GKGCMC 2 cut(s) 851, 942
BstV1I GCAGC 2 cut(s) 727, 796
BstV2I GAAGAC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BtgZI GCGATG 1 cut(s) 28
BtsCI GGATG 7 cut(s) 250, 252, 334, 390, 826, 851, 886
BtsIMutI CAGTG 1 cut(s) 483
BveI ACCTGC 1 cut(s) 815
Cac8I GCNNGC 2 cut(s) 228, 720
CaiI CAGNNNCTG 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 302
Csp6I GTAC 3 cut(s) 210, 548, 804
CviAII CATG 8 cut(s) 347, 431, 542, 582, 815, 831, 840, 1034
CviQI GTAC 3 cut(s) 210, 548, 804
DdeI CTNAG 1 cut(s) 199
DpnI GATC 2 cut(s) 73, 326
DpnII GATC 2 cut(s) 71, 324
Eco130I CCWWGG 1 cut(s) 734
Eco24I GRGCYC 1 cut(s) 951
Eco32I GATATC 1 cut(s) 860
Eco47I GGWCC 1 cut(s) 302
Eco57I CTGAAG 1 cut(s) 648
Eco88I CYCGRG 1 cut(s) 1017
Eco91I GGTNACC 1 cut(s) 554
EcoO109I RGGNCCY 1 cut(s) 302
EcoO65I GGTNACC 1 cut(s) 554
EcoRII CCWGG 2 cut(s) 304, 681
EcoRV GATATC 1 cut(s) 860
EcoT14I CCWWGG 1 cut(s) 734
EcoT38I GRGCYC 1 cut(s) 951
ErhI CCWWGG 1 cut(s) 734
FaeI CATG 8 cut(s) 350, 434, 545, 585, 818, 834, 843, 1037
FalI AAGNNNNNCTT 4 cut(s) 718, 750, 972, 1004
FaqI GGGAC 1 cut(s) 791
FatI CATG 8 cut(s) 346, 430, 541, 581, 814, 830, 839, 1033
Fnu4HI GCNGC 2 cut(s) 741, 785
FokI GGATG 7 cut(s) 239, 257, 321, 397, 833, 838, 893
FriOI GRGCYC 1 cut(s) 951
Fsp4HI GCNGC 2 cut(s) 741, 785
FspBI CTAG 4 cut(s) 195, 227, 339, 863
GluI GCNGC 2 cut(s) 741, 785
GsaI CCCAGC 1 cut(s) 848
GsuI CTGGAG 1 cut(s) 768
Hin1II CATG 8 cut(s) 350, 434, 545, 585, 818, 834, 843, 1037
HindIII AAGCTT 2 cut(s) 238, 764
HinfI GANTC 6 cut(s) 185, 249, 371, 517, 602, 698
HphI GGTGA 4 cut(s) 454, 464, 548, 926
Hpy166II GTNNAC 2 cut(s) 13, 652
Hpy188I TCNGA 3 cut(s) 367, 601, 628
Hpy188III TCNNGA 3 cut(s) 234, 276, 855
Hpy8I GTNNAC 2 cut(s) 13, 652
HpyAV CCTTC 2 cut(s) 293, 880
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4V TGCA 6 cut(s) 104, 377, 483, 722, 743, 784
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 793, 946
HpyF3I CTNAG 1 cut(s) 199
Hsp92II CATG 8 cut(s) 350, 434, 545, 585, 818, 834, 843, 1037
Kzo9I GATC 2 cut(s) 71, 324
LmnI GCTCC 1 cut(s) 734
Lsp1109I GCAGC 2 cut(s) 727, 796
LweI GCATC 3 cut(s) 239, 281, 343
MaeI CTAG 4 cut(s) 195, 227, 339, 863
MaeIII GTNAC 5 cut(s) 452, 554, 616, 826, 1029
MalI GATC 2 cut(s) 73, 326
MboI GATC 2 cut(s) 71, 324
MboII GAAGA 4 cut(s) 81, 151, 380, 641
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 3 cut(s) 851, 942, 951
MluCI AATT 5 cut(s) 49, 258, 315, 415, 771
MlyI GAGTC 1 cut(s) 365
MnlI CCTC 5 cut(s) 48, 119, 335, 743, 811
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 2 cut(s) 542, 819
MspR9I CCNGG 2 cut(s) 306, 683
Mva1269I GAATGC 3 cut(s) 397, 537, 787
MvaI CCWGG 2 cut(s) 306, 683
MwoI GCNNNNNNNGC 3 cut(s) 101, 793, 946
NdeII GATC 2 cut(s) 71, 324
NheI GCTAGC 1 cut(s) 226
NlaIII CATG 8 cut(s) 350, 434, 545, 585, 818, 834, 843, 1037
NlaIV GGNNCC 1 cut(s) 406
NmuCI GTSAC 3 cut(s) 452, 554, 826
NspI RCATGY 2 cut(s) 585, 834
PciI ACATGT 2 cut(s) 581, 830
PctI GAATGC 3 cut(s) 397, 537, 787
PfeI GAWTC 5 cut(s) 185, 249, 517, 602, 698
PflMI CCANNNNNTGG 1 cut(s) 527
PkrI GCNGC 2 cut(s) 742, 786
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PpuMI RGGWCCY 1 cut(s) 302
PscI ACATGT 2 cut(s) 581, 830
PsiI TTATAA 1 cut(s) 770
Psp5II RGGWCCY 1 cut(s) 302
Psp6I CCWGG 2 cut(s) 304, 681
PspEI GGTNACC 1 cut(s) 554
PspFI CCCAGC 1 cut(s) 844
PspGI CCWGG 2 cut(s) 304, 681
PspN4I GGNNCC 1 cut(s) 406
PspPI GGNCC 1 cut(s) 302
PspPPI RGGWCCY 1 cut(s) 302
PstI CTGCAG 1 cut(s) 379
PstNI CAGNNNCTG 1 cut(s) 92
PsuI RGATCY 1 cut(s) 71
RsaI GTAC 3 cut(s) 211, 549, 805
RsaNI GTAC 3 cut(s) 210, 548, 804
RseI CAYNNNNRTG 2 cut(s) 542, 819
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 2 cut(s) 741, 785
Sau3AI GATC 2 cut(s) 71, 324
Sau96I GGNCC 1 cut(s) 302
ScaI AGTACT 1 cut(s) 211
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 2 cut(s) 306, 683
SduI GDGCHC 3 cut(s) 851, 942, 951
SfaNI GCATC 3 cut(s) 239, 281, 343
SfcI CTRYAG 2 cut(s) 375, 570
SinI GGWCC 1 cut(s) 302
SmiMI CAYNNNNRTG 2 cut(s) 542, 819
Sse9I AATT 5 cut(s) 49, 258, 315, 415, 771
SspMI CTAG 4 cut(s) 195, 227, 339, 863
StyD4I CCNGG 2 cut(s) 304, 681
StyI CCWWGG 1 cut(s) 734
TaaI ACNGT 1 cut(s) 222
TasI AATT 5 cut(s) 49, 258, 315, 415, 771
TatI WGTACW 1 cut(s) 209
TfiI GAWTC 5 cut(s) 185, 249, 517, 602, 698
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 1 cut(s) 490
TseFI GTSAC 3 cut(s) 452, 554, 826
TseI GCWGC 2 cut(s) 740, 784
Tsp45I GTSAC 3 cut(s) 452, 554, 826
TspDTI ATGAA 2 cut(s) 530, 780
TspGWI ACGGA 1 cut(s) 165
TspRI CASTG 1 cut(s) 490
Van91I CCANNNNNTGG 1 cut(s) 527
VpaK11BI GGWCC 1 cut(s) 302
XapI RAATTY 2 cut(s) 49, 258
XceI RCATGY 2 cut(s) 585, 834
XcmI CCANNNNNNNNNTGG 1 cut(s) 732
XspI CTAG 4 cut(s) 195, 227, 339, 863
ZrmI AGTACT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.