Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001404

Physical Location & Seq

Genomic Coordinates Reverse (-)

9296913 .. 9298065

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0118400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTACTCCTTCGTGGTGCGATCTGTTCCCCATGCACATGCTGCTTTGCAGCATCTTCCGCCAAGTGATTCAGACCATGTCCCTCTCTTGTTGCGTCCTAGTTCTGTGCCAATAGCCAAAAGACCGCGACACCATCGCTTCAAGTTTGAAGCATTGGCTTTGGATAAGTGGCAGAAGCAAGCTTTCAAGGCAAGCCAGCATCAGATGTTGGGAATTAGGTCACGCCTTGAAGAATTGTTGGATGTCCCTTTATCTGATAATAGGGAGACAGGAACACGGTATTTCCATAGGAAGGCAGCAAACAGAAAACAGAAGAATTCTTTGCCGGGTTTGCTTGATGAGGCTGGGAATTGGTCTGAAAATGATAACGATGTGGAGCGTGTGGTATCCACGAACTGTTACAACCTCAAAAACGATGGAATGGTTGATGACAGAGCTCGCCAGAAATCCAAGTACGATGGAGAAAGTCCAAAAGGAGATAAGAACACCTTTCTAGTTCCTCGGGAAACAAGTAAGGGAGTAGAGTTGGAAGGTTACCGTATCCCTGCCAAAACAAGTGTGTTTGTCAATGCATTTGCAATCCAAAGGGACCCCAAGTTGTGGGAAAGGCCGGATGAGTTCCTCCCAGATAGATTTCAGGGCAACTCAATCGACTTCACAAGCGAGGACTTCCAATTTGTCCCATTTGGTGGTGGTATAAGAAGATGCCCGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

238

Amino Acids

27.23

Weight (kDa)

9.18

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	164 - 238	4.5e-22	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71840
fragaria_vesca	FvH4_2g12470 FvH4_2g12470 FvH4_2g12470 FvH4_2g12470 FvH4_2g12470 FvH4_5g22350 FvH4_5g22350 FvH4_5g22350
malus_domestica	MD02G1272000.v1.1 MD07G1041000.v1.1
prunus_persica	Prupe.8G049100_v2.0.a1
pyrus_communis	pycom02g23260 pycom07g02840
rosa_chinensis	RchiOBHm_Chr2g0090611 RchiOBHm_Chr6g0272901 RchiOBHm_Chr7g0210071
rosa_laevigata	RLG00000003067 RLG00000013656 RLG00000033627 RLG00000036778
rosa_multiflora	Rmu_sc0004509.1_g000030 Rmu_sc0008713.1_g000025 Rmu_sc0008781.1_g000006
rosa_roxburghii	Rroxscaffold_1G00044090 Rroxscaffold_3G00248630 Rroxscaffold_7G00195930
rosa_rugosa	Rorug06G0070800 Rorug06G0070800 Rorug06G0070900 Rorug06G0071000 Rorug07G0118200 Rorug07G0118300 Rorug07G0118400 Rorug07G0163000 Rorug07G0163000 Rorug07G0163100
rosa_samantha	Rh2AG361700 Rh3DG184200 Rh5CG229800 Rh6AG187000 Rh6CG158700 Rh6CG189700 Rh6DG181100 Rh7AG251900 Rh7BG246600 Rh7CG268900 Rh7DG258900 Rh7DG441200
rosa_wichuraiana	Rw4G008120 Rw6G016190 Rw6G016260 Rw7G021400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	600, 689
AccII	CGCG	1 cut(s)	127
AciI	CCGC	2 cut(s)	59, 125
AcsI	RAATTY	1 cut(s)	316
AfaI	GTAC	2 cut(s)	5, 455
AfiI	CCNNNNNNNGG	3 cut(s)	292, 600, 689
AgsI	TTSAA	4 cut(s)	142, 149, 187, 230
AluBI	AGCT	2 cut(s)	182, 437
AluI	AGCT	2 cut(s)	182, 437
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	1 cut(s)	260
Ama87I	CYCGRG	2 cut(s)	501, 709
AoxI	GGCC	1 cut(s)	608
ApeKI	GCWGC	3 cut(s)	41, 49, 296
ApoI	RAATTY	1 cut(s)	316
ArsI	GACNNNNNNTTYG	2 cut(s)	659, 691
AspS9I	GGNCC	1 cut(s)	589
AsuC2I	CCSGG	3 cut(s)	327, 710, 711
AvaI	CYCGRG	2 cut(s)	501, 709
AvaII	GGWCC	1 cut(s)	589
BanII	GRGCYC	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	3 cut(s)	28, 61, 308
BccI	CCATC	3 cut(s)	141, 410, 452
BcgI	CGANNNNNNTGC	2 cut(s)	631, 665
BciVI	GTATCC	2 cut(s)	397, 551
BcnI	CCSGG	3 cut(s)	327, 710, 711
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	2 cut(s)	99, 494
BfuI	GTATCC	2 cut(s)	397, 551
BisI	GCNGC	3 cut(s)	42, 50, 297
BlsI	GCNGC	3 cut(s)	43, 51, 298
Bme1390I	CCNGG	3 cut(s)	327, 710, 711
Bme18I	GGWCC	1 cut(s)	589
BmeT110I	CYCGRG	2 cut(s)	501, 709
BmgT120I	GGNCC	1 cut(s)	589
BmiI	GGNNCC	2 cut(s)	590, 591
BmrFI	CCNGG	3 cut(s)	327, 710, 711
BmsI	GCATC	3 cut(s)	61, 208, 695
BpuMI	CCSGG	3 cut(s)	327, 710, 711
BsaJI	CCNNGG	2 cut(s)	500, 709
Bsc4I	CCNNNNNNNGG	3 cut(s)	292, 600, 689
BseDI	CCNNGG	2 cut(s)	500, 709
BseGI	GGATG	2 cut(s)	247, 619
BseLI	CCNNNNNNNGG	3 cut(s)	292, 600, 689
BseXI	GCAGC	3 cut(s)	28, 61, 308
BseYI	CCCAGC	1 cut(s)	344
Bsh1236I	CGCG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	610
BsiHKAI	GWGCWC	1 cut(s)	439
BsiHKCI	CYCGRG	2 cut(s)	501, 709
BsiSI	CCGG	3 cut(s)	326, 611, 710
BslFI	GGGAC	4 cut(s)	65, 230, 602, 665
BslI	CCNNNNNNNGG	3 cut(s)	292, 600, 689
BsmAI	GTCTC	1 cut(s)	260
BsmFI	GGGAC	4 cut(s)	65, 230, 602, 665
BsnI	GGCC	1 cut(s)	610
BsoBI	CYCGRG	2 cut(s)	501, 709
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp143I	GATC	1 cut(s)	20
BspACI	CCGC	2 cut(s)	59, 125
BspANI	GGCC	1 cut(s)	610
BspFNI	CGCG	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	590, 591
BssECI	CCNNGG	2 cut(s)	500, 709
BssMI	GATC	1 cut(s)	20
Bst4CI	ACNGT	3 cut(s)	279, 398, 539
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstC8I	GCNNGC	4 cut(s)	180, 193, 197, 439
BstEII	GGTNACC	1 cut(s)	533
BstF5I	GGATG	2 cut(s)	247, 619
BstFNI	CGCG	1 cut(s)	127
BstKTI	GATC	1 cut(s)	23
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 58, 188, 331
BstNSI	RCATGY	1 cut(s)	41
BstPI	GGTNACC	1 cut(s)	533
BstSCI	CCNGG	3 cut(s)	325, 708, 709
BstUI	CGCG	1 cut(s)	127
BstV1I	GCAGC	3 cut(s)	28, 61, 308
BsuI	GTATCC	2 cut(s)	397, 551
BsuRI	GGCC	1 cut(s)	610
BtgZI	GCGATG	1 cut(s)	119
BtsCI	GGATG	2 cut(s)	247, 619
Cac8I	GCNNGC	4 cut(s)	180, 193, 197, 439
Cfr13I	GGNCC	1 cut(s)	589
Cfr9I	CCCGGG	1 cut(s)	709
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	2 cut(s)	4, 454
CviAII	CATG	3 cut(s)	32, 38, 77
CviJI	RGCY	7 cut(s)	116, 158, 182, 195, 344, 437, 610
CviKI_1	RGCY	7 cut(s)	116, 158, 182, 195, 344, 437, 610
CviQI	GTAC	2 cut(s)	4, 454
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
EciI	GGCGGA	1 cut(s)	48
Ecl136II	GAGCTC	1 cut(s)	437
Eco24I	GRGCYC	1 cut(s)	439
Eco47I	GGWCC	1 cut(s)	589
Eco53kI	GAGCTC	1 cut(s)	437
Eco88I	CYCGRG	2 cut(s)	501, 709
Eco91I	GGTNACC	1 cut(s)	533
EcoICRI	GAGCTC	1 cut(s)	437
EcoO109I	RGGNCCY	1 cut(s)	589
EcoO65I	GGTNACC	1 cut(s)	533
EcoRI	GAATTC	1 cut(s)	316
EcoT22I	ATGCAT	1 cut(s)	574
EcoT38I	GRGCYC	1 cut(s)	439
FaeI	CATG	3 cut(s)	35, 41, 80
FaiI	YATR	5 cut(s)	33, 39, 78, 288, 698
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FaqI	GGGAC	4 cut(s)	65, 230, 602, 665
FatI	CATG	3 cut(s)	31, 37, 76
Fnu4HI	GCNGC	3 cut(s)	42, 50, 297
FokI	GGATG	2 cut(s)	254, 626
FriOI	GRGCYC	1 cut(s)	439
Fsp4HI	GCNGC	3 cut(s)	42, 50, 297
FspBI	CTAG	2 cut(s)	99, 494
GluI	GCNGC	3 cut(s)	42, 50, 297
GsaI	CCCAGC	1 cut(s)	348
HaeIII	GGCC	1 cut(s)	610
HapII	CCGG	3 cut(s)	326, 611, 710
HgaI	GACGC	1 cut(s)	83
Hin1II	CATG	3 cut(s)	35, 41, 80
HindIII	AAGCTT	1 cut(s)	180
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	3 cut(s)	326, 611, 710
Hpy188I	TCNGA	4 cut(s)	73, 204, 256, 358
Hpy188III	TCNNGA	1 cut(s)	503
HpyAV	CCTTC	3 cut(s)	19, 286, 524
HpyCH4III	ACNGT	3 cut(s)	279, 398, 539
HpyCH4V	TGCA	4 cut(s)	35, 49, 572, 578
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 58, 188, 331
Hsp92II	CATG	3 cut(s)	35, 41, 80
KflI	GGGWCCC	1 cut(s)	589
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	1 cut(s)	376
LpnPI	CCDG	9 cut(s)	209, 255, 330, 339, 455, 558, 623, 624, 639
Lsp1109I	GCAGC	3 cut(s)	28, 61, 308
LweI	GCATC	3 cut(s)	61, 208, 695
MaeI	CTAG	2 cut(s)	99, 494
MaeIII	GTNAC	3 cut(s)	219, 398, 533
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	4 cut(s)	47, 242, 325, 714
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	5 cut(s)	213, 233, 316, 349, 674
MmeI	TCCRAC	2 cut(s)	219, 507
MnlI	CCTC	6 cut(s)	93, 334, 416, 510, 632, 658
Mph1103I	ATGCAT	1 cut(s)	574
MslI	CAYNNNNRTG	1 cut(s)	36
MspI	CCGG	3 cut(s)	326, 611, 710
MspR9I	CCNGG	3 cut(s)	327, 710, 711
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	4 cut(s)	41, 58, 188, 331
NciI	CCSGG	3 cut(s)	327, 710, 711
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	3 cut(s)	35, 41, 80
NlaIV	GGNNCC	2 cut(s)	590, 591
NmuCI	GTSAC	1 cut(s)	219
NsiI	ATGCAT	1 cut(s)	574
NspI	RCATGY	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	68
PflFI	GACNNNGTC	1 cut(s)	77
PflMI	CCANNNNNTGG	2 cut(s)	600, 689
PkrI	GCNGC	3 cut(s)	43, 51, 298
PpuMI	RGGWCCY	1 cut(s)	589
Psp124BI	GAGCTC	1 cut(s)	439
Psp5II	RGGWCCY	1 cut(s)	589
PspEI	GGTNACC	1 cut(s)	533
PspFI	CCCAGC	1 cut(s)	344
PspN4I	GGNNCC	2 cut(s)	590, 591
PspPI	GGNCC	1 cut(s)	589
PspPPI	RGGWCCY	1 cut(s)	589
PsyI	GACNNNGTC	1 cut(s)	77
RsaI	GTAC	2 cut(s)	5, 455
RsaNI	GTAC	2 cut(s)	4, 454
RseI	CAYNNNNRTG	1 cut(s)	36
SacI	GAGCTC	1 cut(s)	439
SatI	GCNGC	3 cut(s)	42, 50, 297
Sau3AI	GATC	1 cut(s)	20
Sau96I	GGNCC	1 cut(s)	589
ScrFI	CCNGG	3 cut(s)	327, 710, 711
SduI	GDGCHC	1 cut(s)	439
SetI	ASST	6 cut(s)	184, 221, 408, 439, 491, 535
SfaNI	GCATC	3 cut(s)	61, 208, 695
SinI	GGWCC	1 cut(s)	589
SmaI	CCCGGG	1 cut(s)	711
SmiMI	CAYNNNNRTG	1 cut(s)	36
Sse9I	AATT	5 cut(s)	213, 233, 316, 349, 674
SsiI	CCGC	2 cut(s)	59, 125
SspMI	CTAG	2 cut(s)	99, 494
SstI	GAGCTC	1 cut(s)	439
StyD4I	CCNGG	3 cut(s)	325, 708, 709
TaaI	ACNGT	3 cut(s)	279, 398, 539
TaqI	TCGA	1 cut(s)	651
TasI	AATT	5 cut(s)	213, 233, 316, 349, 674
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	68
TseFI	GTSAC	1 cut(s)	219
TseI	GCWGC	3 cut(s)	41, 49, 296
Tsp45I	GTSAC	1 cut(s)	219
TspMI	CCCGGG	1 cut(s)	709
Tth111I	GACNNNGTC	1 cut(s)	77
Van91I	CCANNNNNTGG	2 cut(s)	600, 689
VpaK11BI	GGWCC	1 cut(s)	589
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	1 cut(s)	41
XmaI	CCCGGG	1 cut(s)	709
XspI	CTAG	2 cut(s)	99, 494
Zsp2I	ATGCAT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.