Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001404

Physical Location & Seq

Genomic Coordinates Reverse (-)

9282449 .. 9282940

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0118200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTCCAGTAATATAAAAGCCGGAGAAGATAAACTCGGCGTTAGATGGTCTCTGAATAATAGGACTTTCCCAGTTGGAACCGATGCGGCGTATAAGACGGTCACCGTGAAGCTTTGCTACGCGCCGAGGAGTCAAGTGGGCCGGCCGGAGAGGAAGACGGAGGACGACCTCGACAAGGACGAGACATGCCAGATAGAGTTCTATACTGGACACTACAACCCCTCTAGCAAGTGGCCGTACTACGAGTCGACATTGGATGGCCATGTGCCGGCCGCCTTGTACTTCCTACGCGCCTACGCAAACGACTCCGCCGGAGTTGTGGTGGCTTATGGTGAAAGCACGGGACCGGACAGAGACTACAACATATTTGAGGTCGACGCAACTGAGCCAACAGAGGCAAGCAGCGGAAGCCGCAAGACGCTCGATATTTGCTTCGGTTCTTTCTCCGCTTTGCTGTTGGTTGGGTTTTTTTGTTGCTTAGAAGATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

163

Amino Acids

18.09

Weight (kDa)

4.73

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAR2	PF16974	4 - 127	8.8e-37	High-affinity nitrate transporter accessory, Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71840
fragaria_vesca	FvH4_2g12470 FvH4_2g12470 FvH4_2g12470 FvH4_2g12470 FvH4_2g12470 FvH4_5g22350 FvH4_5g22350 FvH4_5g22350
malus_domestica	MD02G1272000.v1.1 MD07G1041000.v1.1
prunus_persica	Prupe.8G049100_v2.0.a1
pyrus_communis	pycom02g23260 pycom07g02840
rosa_chinensis	RchiOBHm_Chr2g0090611 RchiOBHm_Chr6g0272901 RchiOBHm_Chr7g0210071
rosa_laevigata	RLG00000003067 RLG00000013656 RLG00000033627 RLG00000036778
rosa_multiflora	Rmu_sc0004509.1_g000030 Rmu_sc0008713.1_g000025 Rmu_sc0008781.1_g000006
rosa_roxburghii	Rroxscaffold_1G00044090 Rroxscaffold_3G00248630 Rroxscaffold_7G00195930
rosa_rugosa	Rorug06G0070800 Rorug06G0070800 Rorug06G0070900 Rorug06G0071000 Rorug07G0118200 Rorug07G0118300 Rorug07G0118400 Rorug07G0163000 Rorug07G0163000 Rorug07G0163100
rosa_samantha	Rh2AG361700 Rh3DG184200 Rh5CG229800 Rh6AG187000 Rh6CG158700 Rh6CG189700 Rh6DG181100 Rh7AG251900 Rh7BG246600 Rh7CG268900 Rh7DG258900 Rh7DG441200
rosa_wichuraiana	Rw4G008120 Rw6G016190 Rw6G016260 Rw7G021400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	248, 375
AccII	CGCG	2 cut(s)	122, 291
AciI	CCGC	6 cut(s)	86, 273, 309, 405, 412, 447
AcoI	YGGCCR	4 cut(s)	143, 233, 259, 270
AfaI	GTAC	2 cut(s)	239, 281
AfiI	CCNNNNNNNGG	2 cut(s)	175, 268
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw26I	GTCTC	3 cut(s)	54, 176, 348
AoxI	GGCC	5 cut(s)	139, 143, 233, 259, 270
ApeKI	GCWGC	1 cut(s)	402
AspLEI	GCGC	2 cut(s)	124, 293
AspS9I	GGNCC	2 cut(s)	139, 344
AsuHPI	GGTGA	2 cut(s)	94, 344
AvaII	GGWCC	1 cut(s)	344
BalI	TGGCCA	1 cut(s)	261
BarI	GAAGNNNNNNTAC	2 cut(s)	101, 133
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	414
BccI	CCATC	2 cut(s)	39, 251
BceAI	ACGGC	1 cut(s)	220
BcgI	CGANNNNNNTGC	2 cut(s)	403, 437
BcoDI	GTCTC	3 cut(s)	54, 176, 348
BfaI	CTAG	1 cut(s)	225
BisI	GCNGC	4 cut(s)	87, 273, 403, 412
BlsI	GCNGC	4 cut(s)	88, 274, 404, 413
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	2 cut(s)	139, 344
BmiI	GGNNCC	2 cut(s)	79, 345
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	73
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	161
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	125
BsaWI	WCCGGW	1 cut(s)	346
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 268
Bse118I	RCCGGY	2 cut(s)	141, 268
Bse1I	ACTGG	3 cut(s)	6, 71, 211
BseDI	CCNNGG	1 cut(s)	125
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	2 cut(s)	175, 268
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	3 cut(s)	6, 71, 211
BseRI	GAGGAG	1 cut(s)	142
BseX3I	CGGCCG	2 cut(s)	143, 270
BseXI	GCAGC	1 cut(s)	414
Bsh1236I	CGCG	2 cut(s)	122, 291
Bsh1285I	CGRYCG	2 cut(s)	146, 273
BshFI	GGCC	5 cut(s)	141, 145, 235, 261, 272
BsiEI	CGRYCG	2 cut(s)	146, 273
BsiSI	CCGG	6 cut(s)	21, 142, 146, 269, 312, 347
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	175, 268
BsmAI	GTCTC	3 cut(s)	54, 176, 348
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	5 cut(s)	141, 145, 235, 261, 272
Bso31I	GGTCTC	1 cut(s)	54
BspACI	CCGC	6 cut(s)	86, 273, 309, 405, 412, 447
BspANI	GGCC	5 cut(s)	141, 145, 235, 261, 272
BspCNI	CTCAG	1 cut(s)	376
BspFNI	CGCG	2 cut(s)	122, 291
BspLI	GGNNCC	2 cut(s)	79, 345
BspTNI	GGTCTC	1 cut(s)	54
BsrFI	RCCGGY	2 cut(s)	141, 268
BsrI	ACTGG	3 cut(s)	6, 71, 211
BssAI	RCCGGY	2 cut(s)	141, 268
BssECI	CCNNGG	1 cut(s)	125
Bst4CI	ACNGT	2 cut(s)	100, 106
BstC8I	GCNNGC	3 cut(s)	143, 270, 400
BstDEI	CTNAG	2 cut(s)	384, 478
BstEII	GGTNACC	1 cut(s)	100
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	262
BstFNI	CGCG	2 cut(s)	122, 291
BstHHI	GCGC	2 cut(s)	124, 293
BstMAI	GTCTC	3 cut(s)	54, 176, 348
BstMCI	CGRYCG	2 cut(s)	146, 273
BstMWI	GCNNNNNNNGC	2 cut(s)	408, 411
BstNSI	RCATGY	1 cut(s)	189
BstPI	GGTNACC	1 cut(s)	100
BstUI	CGCG	2 cut(s)	122, 291
BstV1I	GCAGC	1 cut(s)	414
BstV2I	GAAGAC	1 cut(s)	161
BstZI	CGGCCG	2 cut(s)	143, 270
BsuRI	GGCC	5 cut(s)	141, 145, 235, 261, 272
BtsCI	GGATG	1 cut(s)	262
Cac8I	GCNNGC	3 cut(s)	143, 270, 400
CfoI	GCGC	2 cut(s)	124, 293
Cfr10I	RCCGGY	2 cut(s)	141, 268
Cfr13I	GGNCC	2 cut(s)	139, 344
CseI	GACGC	2 cut(s)	386, 427
Csp6I	GTAC	2 cut(s)	238, 280
CviAII	CATG	2 cut(s)	186, 263
CviQI	GTAC	2 cut(s)	238, 280
DdeI	CTNAG	2 cut(s)	384, 478
EaeI	YGGCCR	4 cut(s)	143, 233, 259, 270
EagI	CGGCCG	2 cut(s)	143, 270
EciI	GGCGGA	1 cut(s)	298
EclXI	CGGCCG	2 cut(s)	143, 270
Eco31I	GGTCTC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	344
Eco52I	CGGCCG	2 cut(s)	143, 270
Eco91I	GGTNACC	1 cut(s)	100
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	100
FaeI	CATG	2 cut(s)	189, 266
FaiI	YATR	7 cut(s)	14, 93, 187, 204, 264, 330, 365
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	2 cut(s)	185, 262
FblI	GTMKAC	2 cut(s)	248, 375
Fnu4HI	GCNGC	4 cut(s)	87, 273, 403, 412
FokI	GGATG	1 cut(s)	269
FseI	GGCCGGCC	1 cut(s)	145
Fsp4HI	GCNGC	4 cut(s)	87, 273, 403, 412
FspBI	CTAG	1 cut(s)	225
GlaI	GCGC	2 cut(s)	123, 292
GluI	GCNGC	4 cut(s)	87, 273, 403, 412
HaeIII	GGCC	5 cut(s)	141, 145, 235, 261, 272
HapII	CCGG	6 cut(s)	21, 142, 146, 269, 312, 347
HgaI	GACGC	2 cut(s)	386, 427
HhaI	GCGC	2 cut(s)	124, 293
Hin1II	CATG	2 cut(s)	189, 266
Hin6I	GCGC	2 cut(s)	122, 291
HinP1I	GCGC	2 cut(s)	122, 291
HincII	GTYRAC	2 cut(s)	249, 376
HindII	GTYRAC	2 cut(s)	249, 376
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	3 cut(s)	130, 245, 305
HpaII	CCGG	6 cut(s)	21, 142, 146, 269, 312, 347
HphI	GGTGA	2 cut(s)	94, 344
Hpy166II	GTNNAC	2 cut(s)	249, 376
Hpy188I	TCNGA	1 cut(s)	54
Hpy8I	GTNNAC	2 cut(s)	249, 376
Hpy99I	CGWCG	1 cut(s)	380
HpyCH4III	ACNGT	2 cut(s)	100, 106
HpyF10VI	GCNNNNNNNGC	2 cut(s)	408, 411
HpyF3I	CTNAG	2 cut(s)	384, 478
Hsp92II	CATG	2 cut(s)	189, 266
HspAI	GCGC	2 cut(s)	122, 291
KroI	GCCGGC	2 cut(s)	141, 268
KroNI	GCCGGC	2 cut(s)	143, 270
Lsp1109I	GCAGC	1 cut(s)	414
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	100
MboII	GAAGA	2 cut(s)	38, 166
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	1 cut(s)	487
MluNI	TGGCCA	1 cut(s)	261
MlyI	GAGTC	3 cut(s)	139, 254, 299
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	7 cut(s)	120, 144, 154, 179, 232, 364, 388
Mox20I	TGGCCA	1 cut(s)	261
MroNI	GCCGGC	2 cut(s)	141, 268
MscI	TGGCCA	1 cut(s)	261
MseI	TTAA	1 cut(s)	490
Msp20I	TGGCCA	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	405
MspI	CCGG	6 cut(s)	21, 142, 146, 269, 312, 347
MvnI	CGCG	2 cut(s)	122, 291
MwoI	GCNNNNNNNGC	2 cut(s)	408, 411
NaeI	GCCGGC	2 cut(s)	143, 270
NgoMIV	GCCGGC	2 cut(s)	141, 268
NlaIII	CATG	2 cut(s)	189, 266
NlaIV	GGNNCC	2 cut(s)	79, 345
NmeAIII	GCCGAG	2 cut(s)	15, 150
NmuCI	GTSAC	1 cut(s)	100
NspI	RCATGY	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PdiI	GCCGGC	2 cut(s)	143, 270
PkrI	GCNGC	4 cut(s)	88, 274, 404, 413
PleI	GAGTC	3 cut(s)	138, 253, 299
PpsI	GAGTC	3 cut(s)	138, 253, 299
PspEI	GGTNACC	1 cut(s)	100
PspN4I	GGNNCC	2 cut(s)	79, 345
PspPI	GGNCC	2 cut(s)	139, 344
RigI	GGCCGGCC	1 cut(s)	145
RsaI	GTAC	2 cut(s)	239, 281
RsaNI	GTAC	2 cut(s)	238, 280
SalI	GTCGAC	2 cut(s)	247, 374
SaqAI	TTAA	1 cut(s)	490
SatI	GCNGC	4 cut(s)	87, 273, 403, 412
Sau96I	GGNCC	2 cut(s)	139, 344
SchI	GAGTC	3 cut(s)	139, 254, 299
SetI	ASST	3 cut(s)	114, 171, 375
SfaNI	GCATC	1 cut(s)	73
SinI	GGWCC	1 cut(s)	344
Sse9I	AATT	1 cut(s)	487
SsiI	CCGC	6 cut(s)	86, 273, 309, 405, 412, 447
SspMI	CTAG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	100, 106
TaqI	TCGA	4 cut(s)	171, 248, 375, 423
TasI	AATT	1 cut(s)	487
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	3 cut(s)	89, 275, 414
Tru1I	TTAA	1 cut(s)	490
Tru9I	TTAA	1 cut(s)	490
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	402
Tsp45I	GTSAC	1 cut(s)	100
TspGWI	ACGGA	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	344
XagI	CCTNNNNNAGG	1 cut(s)	173
XceI	RCATGY	1 cut(s)	189
XmiI	GTMKAC	2 cut(s)	248, 375
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.