Rroxscaffold_1G00044090

Angio-associated migratory cell

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001404
Physical Location & Seq
Forward (+)
62864792 .. 62866253
1462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00044090.1

Sequence Viewer

Length: 324 bp
ATGTATCTTCGACTTAAAGTTGGTGCTTTGCTGGTTAACTTGCGCTATGCCATTCCGACAGATCCAGTGTTAGTTGCAACATGGGGTGGAGATGACACAGGGTTTCTTTGGAAGATTGGACAAGGAGATTGGGCTTCTAAGCTCCAAGGCCATAAGCATTATGTTTCAAGCTTAGCATTTAGTATTGATGGACAGTTGCTTTCAGCTGGAACAGGTTCTGTCAGATGGACTAGGAGAGTCAACCATGTTTATGGTCAAGTGGAAATTGATGAAGTGCGCAATGAGCTCGCAAGTTATGTGGTGAAGAACATCATCAAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

107

Amino Acids

11.94

Weight (kDa)

9.34

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 278
AclWI GGATC 1 cut(s) 56
AgsI TTSAA 1 cut(s) 168
AluBI AGCT 5 cut(s) 142, 171, 206, 286, 319
AluI AGCT 5 cut(s) 142, 171, 206, 286, 319
Alw21I GWGCWC 1 cut(s) 288
AlwI GGATC 1 cut(s) 56
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 1 cut(s) 148
Asp700I GAANNNNTTC 1 cut(s) 214
AspLEI GCGC 2 cut(s) 45, 279
AsuHPI GGTGA 1 cut(s) 313
BanII GRGCYC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 288
BccI CCATC 2 cut(s) 182, 219
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BfaI CTAG 1 cut(s) 231
BlpI GCTNAGC 1 cut(s) 172
Bpu1102I GCTNAGC 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 65
Bse3DI GCAATG 1 cut(s) 286
BseDI CCNNGG 1 cut(s) 145
BseMI GCAATG 1 cut(s) 286
BseNI ACTGG 1 cut(s) 65
BshFI GGCC 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 288
BsnI GGCC 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 1 cut(s) 61
Bsp1720I GCTNAGC 1 cut(s) 172
BspANI GGCC 1 cut(s) 150
BspPI GGATC 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 286
BsrI ACTGG 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 1 cut(s) 61
BssT1I CCWWGG 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 2 cut(s) 138, 172
BstHHI GCGC 2 cut(s) 45, 279
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstX2I RGATCY 1 cut(s) 61
BstXI CCANNNNNNTGG 1 cut(s) 251
BstYI RGATCY 1 cut(s) 61
BsuRI GGCC 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 288
CaiI CAGNNNCTG 1 cut(s) 218
CfoI GCGC 2 cut(s) 45, 279
CspCI CAANNNNNGTGG 2 cut(s) 279, 314
CviAII CATG 2 cut(s) 81, 245
CviJI RGCY 7 cut(s) 134, 142, 150, 171, 206, 286, 319
CviKI_1 RGCY 7 cut(s) 134, 142, 150, 171, 206, 286, 319
DdeI CTNAG 2 cut(s) 138, 172
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Ecl136II GAGCTC 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 288
Eco53kI GAGCTC 1 cut(s) 286
EcoICRI GAGCTC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 2 cut(s) 84, 248
FaiI YATR 7 cut(s) 48, 82, 153, 162, 246, 252, 297
FatI CATG 2 cut(s) 80, 244
FriOI GRGCYC 1 cut(s) 288
FspBI CTAG 1 cut(s) 231
FspI TGCGCA 1 cut(s) 278
GlaI GCGC 2 cut(s) 44, 278
HaeIII GGCC 1 cut(s) 150
HhaI GCGC 2 cut(s) 45, 279
Hin1II CATG 2 cut(s) 84, 248
Hin6I GCGC 2 cut(s) 43, 277
HinP1I GCGC 2 cut(s) 43, 277
HincII GTYRAC 2 cut(s) 37, 241
HindII GTYRAC 2 cut(s) 37, 241
HindIII AAGCTT 1 cut(s) 169
HinfI GANTC 1 cut(s) 237
HpaI GTTAAC 1 cut(s) 37
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 2 cut(s) 37, 241
Hpy188I TCNGA 2 cut(s) 57, 224
Hpy8I GTNNAC 2 cut(s) 37, 241
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 2 cut(s) 138, 172
Hsp92II CATG 2 cut(s) 84, 248
HspAI GCGC 2 cut(s) 43, 277
KspAI GTTAAC 1 cut(s) 37
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 1 cut(s) 147
LpnPI CCDG 5 cut(s) 17, 78, 84, 192, 198
MaeI CTAG 1 cut(s) 231
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 2 cut(s) 124, 316
MflI RGATCY 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 1 cut(s) 264
MlyI GAGTC 1 cut(s) 246
MmeI TCCRAC 1 cut(s) 80
MroXI GAANNNNTTC 1 cut(s) 214
MseI TTAA 2 cut(s) 15, 36
MslI CAYNNNNRTG 1 cut(s) 249
MspA1I CMGCKG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeII GATC 1 cut(s) 61
NlaIII CATG 2 cut(s) 84, 248
NsbI TGCGCA 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 214
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
Psp124BI GAGCTC 1 cut(s) 288
PstNI CAGNNNCTG 1 cut(s) 218
PsuI RGATCY 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 249
SacI GAGCTC 1 cut(s) 288
SaqAI TTAA 2 cut(s) 15, 36
Sau3AI GATC 1 cut(s) 61
SchI GAGTC 1 cut(s) 246
SduI GDGCHC 1 cut(s) 288
SetI ASST 6 cut(s) 144, 173, 208, 217, 288, 321
SmiMI CAYNNNNRTG 1 cut(s) 249
Sse9I AATT 1 cut(s) 264
SspMI CTAG 1 cut(s) 231
SstI GAGCTC 1 cut(s) 288
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 195
TaqI TCGA 1 cut(s) 10
TasI AATT 1 cut(s) 264
Tru1I TTAA 2 cut(s) 15, 36
Tru9I TTAA 2 cut(s) 15, 36
TscAI CASTG 1 cut(s) 72
TspDTI ATGAA 1 cut(s) 285
TspRI CASTG 1 cut(s) 72
XmnI GAANNNNTTC 1 cut(s) 214
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.