Rh6AG187000

Angio-associated migratory cell

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001404
Physical Location & Seq
Reverse (-)
33071049 .. 33076185
5137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG187000.1

Sequence Viewer

Length: 924 bp
ATGCATACATTTACTGGTCATACGGGTGAACTTTATACAGTTGTCTGCAGTCCGACAGATCCAGTGTTAGTTGCAACAGGGGGTGGAGATGACAGAGGGTTTCTTTGGAAGATTGGACAAGGAGATTGGGCTTCTGAGCTCCAAGGCCATAAGGATTCTGTTTCTAGTTTAGCATTTAGTTCTGATGGACAGTTGCTTGCATCTGGAAGCTTGGATGGAATTATTCAAATTTGGGATATAACATCAGCAAATCTAAAAAGCACTCTTGAAGGTCCTGGAGGGGGCATTGAGTGGGTCAGGTGGCATCCTAGAGGGCATCTGGTCCTGGCTGGTTCGGAGGACTCTACAGTTTGGATGTGGAATGGCGACAAAGGTTCCTATCTTCAATTGTTTTCAGGGCATGGTGGTAGCGTGACTTGTGGTGATTTTACCCCCGATGGTAAAACAATCTGCACTGGTTCTAATGATGCAAGTTTGAGAATATGGAACCCAAAAAGTGGAGAGAACATTCATGTGGTACAAGGTCATCCTTACCATTCTGCAGGGTTGACATGCTTGGCAATAAGCTCTGATTCAACTCTAGCTGTTACTGGTTCTGAAGATGGCTCTGTCCATATTGTAAATATAACTACTGGAAAGGTTGTTAGTTCCCTGGCTTCACATTCAGATTCAGTAGAATGTATCGGACTTGCACCAAGTTTCCCTTGGGCTGCAACAGGAGGTATGGATAACAAGCTTATCATCTGGGATTTGCAACATTCGTTGCCCCGTTCTACATGTGACCATGAGGTCTGTGAGAGTTTCATCTCTACATTATCTCAAATGATTATCACCATCTGGTTCTCTTTTTCTTTATCGAATTTATTATGGTCACCAGCTTGTTTATTAAATGTCAATTGTTGGATGTCATACTTCAGATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

307

Amino Acids

32.92

Weight (kDa)

5.09

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR36-Utp21_1st PF25171 2 - 121 3.1e-07 WDR36/Utp21 first beta-propeller
Beta-prop_WDR5 PF25175 2 - 89 2.5e-16 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 2 - 163 7.4e-30 WDR3 first beta-propeller domain
WD40_Gbeta PF25391 4 - 119 4.2e-13 G protein beta WD-40 repeat protein
Beta-prop_WDR75_1st PF23869 6 - 110 2.1e-07 WD repeat-containing protein 75 first beta-propeller
NBCH_WD40 PF20426 11 - 84 3.7e-07 Neurobeachin beta propeller domain
Beta-prop_EML_2 PF23414 11 - 170 6.9e-17 Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19 PF24814 14 - 176 4.3e-27 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 14 - 89 2.4e-09 WDHD1 first WD40 domain
WDR55 PF24796 19 - 194 1.4e-12 WDR55
Beta-prop_EML PF23409 35 - 208 8.4e-14 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR19_1st PF23389 42 - 173 2.9e-07 WDR19 first beta-propeller
Beta-prop_TEP1_2nd PF25047 44 - 137 2.8e-10 TEP-1 second beta-propeller
WD40_CDC20-Fz PF24807 45 - 128 4.9e-11 CDC20/Fizzy WD40 domain
WD40 PF00400 46 - 79 2.1e-11 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 46 - 163 1.6e-18 WDR3 second beta-propeller domain
EIF3I PF24805 47 - 129 1.3e-06 EIF3I
Beta-prop_WDR5 PF25175 47 - 176 5.4e-34 WDR5 beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 47 - 108 1e-06 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 47 - 172 5.8e-12 WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3 PF25174 50 - 261 3.3e-38 THOC3 beta-propeller domain
Beta-prop_Aladin PF25460 51 - 121 2.1e-06 Aladin seven-bladed propeller
WDR90_beta-prop_4th PF23342 54 - 176 9.9e-06 WDR90, 4th beta-propeller
EIF3I PF24805 90 - 174 4.1e-11 EIF3I
WD40_CDC20-Fz PF24807 99 - 261 7.5e-19 CDC20/Fizzy WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 99 - 172 1e-06 CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st PF24817 99 - 177 1.9e-08 WDHD1 first WD40 domain
Beta-prop_HPS5 PF23756 108 - 213 1e-05 HPS5 beta-propeller
WD40_Gbeta PF25391 112 - 250 1.3e-13 G protein beta WD-40 repeat protein
WD40 PF00400 126 - 163 1.5e-08 WD domain, G-beta repeat
Beta-prop_TEP1_2nd PF25047 132 - 228 9.4e-11 TEP-1 second beta-propeller
WDR55 PF24796 139 - 253 5.5e-09 WDR55
WD40_MABP1-WDR62_2nd PF24782 145 - 232 1.1e-06 MABP1/WDR62 second WD40 domain
Beta-prop_EML_2 PF23414 149 - 270 7.3e-11 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 150 - 254 1.2e-10 WDR36/Utp21 first beta-propeller
Beta-prop_SCAP PF24017 150 - 258 1.9e-06 SCAP Beta-propeller
Beta-prop_WDR3_2nd PF25172 160 - 254 1.2e-09 WDR3 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 160 - 252 9.3e-14 WDR3 first beta-propeller domain
WD40 PF00400 168 - 206 2.6e-06 WD domain, G-beta repeat
WD40_Gbeta PF25391 169 - 260 5.6e-06 G protein beta WD-40 repeat protein
WD40_Prp19 PF24814 176 - 258 3.4e-10 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 179 - 254 6.9e-12 WDR5 beta-propeller domain
NBCH_WD40 PF20426 181 - 254 8e-08 Neurobeachin beta propeller domain
WD40_WDHD1_1st PF24817 181 - 282 6.3e-10 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 788
AccB7I CCANNNNNTGG 1 cut(s) 497
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 2 cut(s) 228, 859
AcuI CTGAAG 2 cut(s) 618, 898
AfaI GTAC 1 cut(s) 519
AfiI CCNNNNNNNGG 2 cut(s) 281, 497
AflIII ACRYGT 1 cut(s) 776
AgsI TTSAA 4 cut(s) 227, 269, 386, 576
AjnI CCWGG 3 cut(s) 274, 324, 651
AluBI AGCT 6 cut(s) 139, 210, 567, 584, 736, 878
AluI AGCT 6 cut(s) 139, 210, 567, 584, 736, 878
Alw21I GWGCWC 1 cut(s) 141
AlwI GGATC 1 cut(s) 53
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 710
ApoI RAATTY 2 cut(s) 228, 859
AspS9I GGNCC 2 cut(s) 272, 322
AsuHPI GGTGA 4 cut(s) 38, 434, 823, 864
AvaII GGWCC 2 cut(s) 272, 322
BanII GRGCYC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 697
BccI CCATC 5 cut(s) 179, 209, 431, 596, 842
BciT130I CCWGG 3 cut(s) 276, 326, 653
BfaI CTAG 3 cut(s) 165, 309, 581
BfmI CTRYAG 3 cut(s) 46, 345, 540
BisI GCNGC 1 cut(s) 711
BlsI GCNGC 1 cut(s) 712
Bme1390I CCNGG 3 cut(s) 276, 326, 653
Bme18I GGWCC 2 cut(s) 272, 322
BmgT120I GGNCC 2 cut(s) 272, 322
BmiI GGNNCC 2 cut(s) 376, 488
BmrFI CCNGG 3 cut(s) 276, 326, 653
BmsI GCATC 4 cut(s) 209, 313, 325, 457
BpmI CTGGAG 1 cut(s) 297
BsaJI CCNNGG 3 cut(s) 142, 651, 704
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 497
Bse1I ACTGG 5 cut(s) 19, 62, 460, 595, 637
BseBI CCWGG 3 cut(s) 276, 326, 653
BseDI CCNNGG 3 cut(s) 142, 651, 704
BseGI GGATG 5 cut(s) 220, 304, 360, 526, 909
BseLI CCNNNNNNNGG 2 cut(s) 281, 497
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 5 cut(s) 19, 62, 460, 595, 637
BseXI GCAGC 1 cut(s) 697
BsgI GTGCAG 1 cut(s) 436
BshFI GGCC 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 281, 497
BsnI GGCC 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 1 cut(s) 58
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 127
BspLI GGNNCC 2 cut(s) 376, 488
BspMAI CTGCAG 2 cut(s) 50, 544
BspPI GGATC 1 cut(s) 53
BsrI ACTGG 5 cut(s) 19, 62, 460, 595, 637
BssECI CCNNGG 3 cut(s) 142, 651, 704
BssMI GATC 1 cut(s) 58
BssT1I CCWWGG 2 cut(s) 142, 704
Bst2UI CCWGG 3 cut(s) 276, 326, 653
Bst4CI ACNGT 3 cut(s) 40, 192, 349
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 135
BstEII GGTNACC 1 cut(s) 870
BstF5I GGATG 5 cut(s) 220, 304, 360, 526, 909
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstNI CCWGG 3 cut(s) 276, 326, 653
BstNSI RCATGY 2 cut(s) 555, 780
BstPI GGTNACC 1 cut(s) 870
BstSCI CCNGG 3 cut(s) 274, 324, 651
BstSFI CTRYAG 3 cut(s) 46, 345, 540
BstV1I GCAGC 1 cut(s) 697
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 1 cut(s) 147
BtsCI GGATG 5 cut(s) 220, 304, 360, 526, 909
BtsIMutI CAGTG 2 cut(s) 69, 453
Cac8I GCNNGC 1 cut(s) 198
Cfr13I GGNCC 2 cut(s) 272, 322
Csp6I GTAC 1 cut(s) 518
CviAII CATG 5 cut(s) 401, 512, 552, 777, 785
CviQI GTAC 1 cut(s) 518
DdeI CTNAG 1 cut(s) 135
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
DrdI GACNNNNNNGTC 1 cut(s) 788
DseDI GACNNNNNNGTC 1 cut(s) 788
Ecl136II GAGCTC 1 cut(s) 139
Eco130I CCWWGG 2 cut(s) 142, 704
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 2 cut(s) 272, 322
Eco53kI GAGCTC 1 cut(s) 139
Eco57I CTGAAG 2 cut(s) 618, 898
Eco91I GGTNACC 1 cut(s) 870
EcoICRI GAGCTC 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 272
EcoO65I GGTNACC 1 cut(s) 870
EcoRII CCWGG 3 cut(s) 274, 324, 651
EcoT14I CCWWGG 2 cut(s) 142, 704
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 141
ErhI CCWWGG 2 cut(s) 142, 704
FaeI CATG 5 cut(s) 404, 515, 555, 780, 788
FalI AAGNNNNNCTT 2 cut(s) 688, 720
FatI CATG 5 cut(s) 400, 511, 551, 776, 784
Fnu4HI GCNGC 1 cut(s) 711
FokI GGATG 5 cut(s) 227, 291, 367, 513, 916
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 711
FspBI CTAG 3 cut(s) 165, 309, 581
GluI GCNGC 1 cut(s) 711
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 1 cut(s) 147
Hin1II CATG 5 cut(s) 404, 515, 555, 780, 788
HincII GTYRAC 1 cut(s) 549
HindII GTYRAC 1 cut(s) 549
HindIII AAGCTT 2 cut(s) 208, 734
HinfI GANTC 4 cut(s) 155, 341, 572, 668
HphI GGTGA 4 cut(s) 38, 434, 823, 864
Hpy166II GTNNAC 2 cut(s) 29, 549
Hpy188I TCNGA 9 cut(s) 54, 136, 184, 337, 571, 598, 667, 686, 917
Hpy188III TCNNGA 2 cut(s) 204, 266
Hpy8I GTNNAC 2 cut(s) 29, 549
HpyAV CCTTC 1 cut(s) 263
HpyCH4III ACNGT 3 cut(s) 40, 192, 349
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 5 cut(s) 404, 515, 555, 780, 788
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 144
Lsp1109I GCAGC 1 cut(s) 697
LweI GCATC 4 cut(s) 209, 313, 325, 457
MaeI CTAG 3 cut(s) 165, 309, 581
MaeIII GTNAC 4 cut(s) 412, 586, 779, 870
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 3 cut(s) 121, 374, 611
MfeI CAATTG 2 cut(s) 386, 895
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 5 cut(s) 219, 228, 386, 859, 895
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 2 cut(s) 77, 881
MnlI CCTC 6 cut(s) 89, 272, 305, 331, 713, 781
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 887, 922
MslI CAYNNNNRTG 2 cut(s) 24, 512
MspR9I CCNGG 3 cut(s) 276, 326, 653
MunI CAATTG 2 cut(s) 386, 895
MvaI CCWGG 3 cut(s) 276, 326, 653
NdeII GATC 1 cut(s) 58
NlaIII CATG 5 cut(s) 404, 515, 555, 780, 788
NlaIV GGNNCC 2 cut(s) 376, 488
NmuCI GTSAC 3 cut(s) 412, 779, 870
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 555, 780
PciI ACATGT 1 cut(s) 776
PfeI GAWTC 3 cut(s) 155, 572, 668
PflMI CCANNNNNTGG 1 cut(s) 497
PfoI TCCNGGA 1 cut(s) 274
PkrI GCNGC 1 cut(s) 712
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
PpuMI RGGWCCY 1 cut(s) 272
PscI ACATGT 1 cut(s) 776
Psp124BI GAGCTC 1 cut(s) 141
Psp5II RGGWCCY 1 cut(s) 272
Psp6I CCWGG 3 cut(s) 274, 324, 651
PspEI GGTNACC 1 cut(s) 870
PspGI CCWGG 3 cut(s) 274, 324, 651
PspN4I GGNNCC 2 cut(s) 376, 488
PspPI GGNCC 2 cut(s) 272, 322
PspPPI RGGWCCY 1 cut(s) 272
PstI CTGCAG 2 cut(s) 50, 544
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 1 cut(s) 519
RsaNI GTAC 1 cut(s) 518
RseI CAYNNNNRTG 2 cut(s) 24, 512
SacI GAGCTC 1 cut(s) 141
SaqAI TTAA 2 cut(s) 887, 922
SatI GCNGC 1 cut(s) 711
Sau3AI GATC 1 cut(s) 58
Sau96I GGNCC 2 cut(s) 272, 322
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 3 cut(s) 276, 326, 653
SduI GDGCHC 1 cut(s) 141
SfaNI GCATC 4 cut(s) 209, 313, 325, 457
SfcI CTRYAG 3 cut(s) 46, 345, 540
SinI GGWCC 2 cut(s) 272, 322
SmiMI CAYNNNNRTG 2 cut(s) 24, 512
Sse9I AATT 5 cut(s) 219, 228, 386, 859, 895
SspMI CTAG 3 cut(s) 165, 309, 581
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 3 cut(s) 274, 324, 651
StyI CCWWGG 2 cut(s) 142, 704
TaaI ACNGT 3 cut(s) 40, 192, 349
TaqI TCGA 1 cut(s) 857
TasI AATT 5 cut(s) 219, 228, 386, 859, 895
TfiI GAWTC 3 cut(s) 155, 572, 668
Tru1I TTAA 2 cut(s) 887, 922
Tru9I TTAA 2 cut(s) 887, 922
TscAI CASTG 2 cut(s) 69, 460
TseFI GTSAC 3 cut(s) 412, 779, 870
TseI GCWGC 1 cut(s) 710
Tsp45I GTSAC 3 cut(s) 412, 779, 870
TspDTI ATGAA 2 cut(s) 500, 793
TspRI CASTG 2 cut(s) 69, 460
Van91I CCANNNNNTGG 1 cut(s) 497
VpaK11BI GGWCC 2 cut(s) 272, 322
XapI RAATTY 2 cut(s) 228, 859
XceI RCATGY 2 cut(s) 555, 780
XcmI CCANNNNNNNNNTGG 1 cut(s) 702
XspI CTAG 3 cut(s) 165, 309, 581
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.