RLG00000033627

Angio-associated migratory cell

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001404
Physical Location & Seq
Forward (+)
29762052 .. 29762679
628 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033627

Sequence Viewer

Length: 366 bp
ATGTGGAAGATCTGCCTGATGCAGACGACCAAGCAGTTGGTACATCATCGTTTGGCATACAATTCCTTATTTATCTGGGATTTGCATACAACAGGAGGCATGGATAACAAGCTTATCATCTGGGATTTGCAACATTCGTTGCCCCGTTCTACATGTGACCATGAGGATGGAGTGGCATGCTTGACCTGGCTTGGGGTATCTAGGTACCTAGCAACAGGTTGTGCGGATGGGAAGGTCCGATTATGGCATAGTCTCTCTGGTGATTGTGTAAGAACCTTCAATGGGCATAGTGAACCCATTCAATCACTCTCTGTATCTGCCAACAAGGACTTCCTTGTTTCAGTATCTACTGATGGAACGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

122

Amino Acids

13.52

Weight (kDa)

6.63

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANAPC4_WD40 PF12894 5 - 104 2.2e-07 Anaphase-promoting complex subunit 4 WD40 domain
WD40_Prp19 PF24814 28 - 120 3.3e-14 Prp19 WD40 domain
Beta-prop_WDR3_2nd PF25172 28 - 119 8.7e-10 WDR3 second beta-propeller domain
Beta-prop_WDR5 PF25175 30 - 120 2e-16 WDR5 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 30 - 120 3.4e-11 TEP-1 second beta-propeller
Beta-prop_EML_2 PF23414 30 - 119 1.4e-09 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 30 - 120 7.7e-08 WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz PF24807 33 - 119 4.6e-10 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 34 - 119 1.4e-14 WDR3 first beta-propeller domain
WDR55 PF24796 34 - 120 5.1e-08 WDR55
Beta-prop_THOC3 PF25174 49 - 119 5.2e-12 THOC3 beta-propeller domain
WD40 PF00400 53 - 82 1.6e-06 WD domain, G-beta repeat
EIF3I PF24805 54 - 121 4e-06 EIF3I
WD40_WDHD1_1st PF24817 67 - 120 1e-07 WDHD1 first WD40 domain
WD40_MABP1-WDR62_2nd PF24782 67 - 119 1.6e-08 MABP1/WDR62 second WD40 domain
WD40 PF00400 87 - 120 2e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 204
AccB1I GGYRCC 1 cut(s) 204
AciI CCGC 1 cut(s) 224
AfaI GTAC 2 cut(s) 42, 206
AfiI CCNNNNNNNGG 2 cut(s) 192, 282
AflIII ACRYGT 1 cut(s) 152
AgsI TTSAA 2 cut(s) 280, 302
AjnI CCWGG 1 cut(s) 185
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 257
AoxI GGCC 1 cut(s) 360
Asp700I GAANNNNTTC 1 cut(s) 297
Asp718I GGTACC 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 272
AvaII GGWCC 1 cut(s) 235
BanI GGYRCC 1 cut(s) 204
BccI CCATC 3 cut(s) 161, 221, 347
BciT130I CCWGG 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 2 cut(s) 201, 209
BglII AGATCT 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 187
BmsI GCATC 1 cut(s) 9
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 282
BseBI CCWGG 1 cut(s) 187
BseGI GGATG 2 cut(s) 172, 232
BseLI CCNNNNNNNGG 2 cut(s) 192, 282
BshFI GGCC 1 cut(s) 362
BshNI GGYRCC 1 cut(s) 204
BslI CCNNNNNNNGG 2 cut(s) 192, 282
BsmAI GTCTC 1 cut(s) 257
BsnI GGCC 1 cut(s) 362
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 1 cut(s) 224
BspANI GGCC 1 cut(s) 362
BspLI GGNNCC 1 cut(s) 206
BspT107I GGYRCC 1 cut(s) 204
BssMI GATC 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 178
BstF5I GGATG 2 cut(s) 172, 232
BstKTI GATC 1 cut(s) 12
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 1 cut(s) 9
BstNI CCWGG 1 cut(s) 187
BstNSI RCATGY 2 cut(s) 156, 180
BstSCI CCNGG 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 9
BstXI CCANNNNNNTGG 2 cut(s) 37, 167
BstYI RGATCY 1 cut(s) 9
BsuRI GGCC 1 cut(s) 362
BtsCI GGATG 2 cut(s) 172, 232
Cac8I GCNNGC 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 235
Csp6I GTAC 2 cut(s) 41, 205
CviAII CATG 4 cut(s) 100, 153, 161, 177
CviJI RGCY 3 cut(s) 112, 190, 362
CviKI_1 RGCY 3 cut(s) 112, 190, 362
CviQI GTAC 2 cut(s) 41, 205
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 185
FaeI CATG 4 cut(s) 103, 156, 164, 180
FaiI YATR 9 cut(s) 58, 87, 101, 154, 162, 178, 244, 249, 288
FatI CATG 4 cut(s) 99, 152, 160, 176
FokI GGATG 2 cut(s) 179, 239
FspBI CTAG 2 cut(s) 201, 209
HaeIII GGCC 1 cut(s) 362
Hin1II CATG 4 cut(s) 103, 156, 164, 180
HindIII AAGCTT 1 cut(s) 110
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 293
Hpy188I TCNGA 1 cut(s) 239
Hpy8I GTNNAC 1 cut(s) 293
HpyAV CCTTC 2 cut(s) 226, 286
HpyCH4V TGCA 3 cut(s) 22, 85, 130
Hsp92II CATG 4 cut(s) 103, 156, 164, 180
KpnI GGTACC 1 cut(s) 208
Kzo9I GATC 1 cut(s) 9
LpnPI CCDG 8 cut(s) 29, 61, 78, 106, 172, 199, 201, 243
LweI GCATC 1 cut(s) 9
MaeI CTAG 2 cut(s) 201, 209
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 1 cut(s) 19
MflI RGATCY 1 cut(s) 9
MluCI AATT 1 cut(s) 61
MnlI CCTC 2 cut(s) 89, 157
MroXI GAANNNNTTC 1 cut(s) 297
MslI CAYNNNNRTG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 187
MvaI CCWGG 1 cut(s) 187
NdeII GATC 1 cut(s) 9
NlaIII CATG 4 cut(s) 103, 156, 164, 180
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 155
NspI RCATGY 2 cut(s) 156, 180
PaeI GCATGC 1 cut(s) 180
PciI ACATGT 1 cut(s) 152
PdmI GAANNNNTTC 1 cut(s) 297
PscI ACATGT 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 235
PsuI RGATCY 1 cut(s) 9
RsaI GTAC 2 cut(s) 42, 206
RsaNI GTAC 2 cut(s) 41, 205
RseI CAYNNNNRTG 1 cut(s) 165
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 1 cut(s) 235
ScrFI CCNGG 1 cut(s) 187
SetI ASST 7 cut(s) 114, 188, 206, 210, 220, 237, 278
SfaNI GCATC 1 cut(s) 9
SinI GGWCC 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 165
SphI GCATGC 1 cut(s) 180
Sse9I AATT 1 cut(s) 61
SsiI CCGC 1 cut(s) 224
SspMI CTAG 2 cut(s) 201, 209
StyD4I CCNGG 1 cut(s) 185
TasI AATT 1 cut(s) 61
TseFI GTSAC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 235
XceI RCATGY 2 cut(s) 156, 180
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 2 cut(s) 201, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.