Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Forward (+)

5700892 .. 5702012

Gene Structure 1121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGGCAATAAAGTTTCCAGCGGAAACAAAAGGGGCAGCAGCAGCAGCAAGAAATTGAGCAAGCACATTTCCGTCAGAACCAAACAGACAGGAGGATTACATACGAAGGAAATAAATTTGGGTTTCGCTCAGATCTTGGAGAAGAACCAACATGTTTATACTGATCCAACATTTGTATGTGACTTCTGTCTTCAGTTGATTCATCTGGAAAACTCATTCAACATCAAGGGTTGCACCCATTTTTACTGTCAAGAGTGCACTGTTAAATACGTAGAATCTAATCTCCGAATAAATGTCACATCCATTGTGTGCCCTGTACCGGACTGCCAGGGTGTCTTAGACCCAGATCACTGCCGTCAAATCCTTCCATCCGACGTCATTGTTTCGTGGGGCAATGCTTTATATGAGTCTGTACTTGCCCCTGAAAGCGATATTGATTCAACCTTCATATGTGATTTCTGTGTTGAGCCAGTTAACCTGAAAGACTCATTTAACATAAAGGGTTGCACCCATTTTTACTGTCAAGGCTGCATTGTTAAATTCATAGCATCCAAGCTGCAAGACAATGTCACTTGCATTACGTGCCCTGTACCGGACTGCAGCGGCGCGTTAGACATCGAGTACTGCCGTCCAATTATCCCGGAAGACGTCTTTGATTGGTGGGGAAAGGCCTTATGTGAATCTGTCGTTATGGACCCTCGGAGGAAGTACTTATACTGTCCATACAACTCGTGCTCGGCACTGTTGATTAATGAGGAACCAGAGGATACCAGTCAGTCTGTGTGTCCTCATTGCAATAGAGAATTTTGCGCCATGTGTAAGGTTCCTTGGCATACCGAATTTGACTGTGCCATGTTTCAGAAGTTGAAAGAGAAGGGCGAAGACAAGATGTTGGAAGTGCTTGCGAAGAATAAGAACTGGAGGAGGTGTCCAAATTGCAATTATTACGTTGAAAGAAATGAGGGGTGTAGCTACATTTTATGCAGATTTTCTGCAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

334

Amino Acids

37.82

Weight (kDa)

6.01

Isoelectric Point (pI)

52.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	223 - 283	3.5e-11	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	378, 651
AccII	CGCG	1 cut(s)	608
AciI	CCGC	2 cut(s)	21, 603
AclWI	GGATC	1 cut(s)	158
AcsI	RAATTY	4 cut(s)	115, 539, 803, 839
AcuI	CTGAAG	1 cut(s)	176
AcyI	GRCGYC	2 cut(s)	375, 648
AfaI	GTAC	5 cut(s)	318, 414, 591, 623, 710
AfiI	CCNNNNNNNGG	2 cut(s)	319, 592
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	4 cut(s)	220, 441, 868, 953
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	2 cut(s)	556, 972
AluI	AGCT	2 cut(s)	556, 972
Alw21I	GWGCWC	2 cut(s)	260, 737
Alw44I	GTGCAC	1 cut(s)	256
AlwI	GGATC	1 cut(s)	158
AoxI	GGCC	1 cut(s)	669
ApaLI	GTGCAC	1 cut(s)	256
ApeKI	GCWGC	7 cut(s)	36, 39, 42, 45, 528, 556, 600
ApoI	RAATTY	4 cut(s)	115, 539, 803, 839
AseI	ATTAAT	1 cut(s)	750
AspLEI	GCGC	2 cut(s)	608, 812
AspS9I	GGNCC	1 cut(s)	694
AsuC2I	CCSGG	1 cut(s)	641
AvaII	GGWCC	1 cut(s)	694
BaeGI	GKGCMC	3 cut(s)	260, 314, 587
BarI	GAAGNNNNNNTAC	2 cut(s)	698, 730
BauI	CACGAG	1 cut(s)	730
BbsI	GAAGAC	3 cut(s)	182, 651, 888
Bbv12I	GWGCWC	2 cut(s)	260, 737
BbvI	GCAGC	7 cut(s)	48, 51, 54, 57, 515, 543, 612
BccI	CCATC	1 cut(s)	376
BceAI	ACGGC	2 cut(s)	339, 612
BciT130I	CCWGG	1 cut(s)	329
BciVI	GTATCC	1 cut(s)	760
BcnI	CCSGG	1 cut(s)	641
BfmI	CTRYAG	2 cut(s)	598, 993
BfuI	GTATCC	1 cut(s)	760
BglII	AGATCT	1 cut(s)	132
BisI	GCNGC	8 cut(s)	37, 40, 43, 46, 529, 557, 601, 604
BlsI	GCNGC	8 cut(s)	38, 41, 44, 47, 530, 558, 602, 605
BmcAI	AGTACT	2 cut(s)	623, 710
Bme1390I	CCNGG	2 cut(s)	329, 641
Bme18I	GGWCC	1 cut(s)	694
BmgT120I	GGNCC	1 cut(s)	694
BmiI	GGNNCC	3 cut(s)	696, 759, 825
BmrFI	CCNGG	2 cut(s)	329, 641
BmsI	GCATC	1 cut(s)	557
BoxI	GACNNNNGTC	1 cut(s)	186
BpiI	GAAGAC	3 cut(s)	182, 651, 888
BpmI	CTGGAG	1 cut(s)	940
BpuMI	CCSGG	1 cut(s)	641
BsaAI	YACGTR	2 cut(s)	271, 582
BsaHI	GRCGYC	2 cut(s)	375, 648
BsaJI	CCNNGG	3 cut(s)	328, 698, 827
BsaWI	WCCGGW	2 cut(s)	319, 592
BsaXI	ACNNNNNCTCC	2 cut(s)	913, 943
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 592
Bse1I	ACTGG	3 cut(s)	470, 771, 923
Bse3DI	GCAATG	2 cut(s)	400, 790
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	3 cut(s)	328, 698, 827
BseGI	GGATG	3 cut(s)	299, 368, 548
BseLI	CCNNNNNNNGG	2 cut(s)	319, 592
BseMI	GCAATG	2 cut(s)	400, 790
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	3 cut(s)	470, 771, 923
BseRI	GAGGAG	1 cut(s)	937
BseSI	GKGCMC	3 cut(s)	260, 314, 587
BseXI	GCAGC	7 cut(s)	48, 51, 54, 57, 515, 543, 612
Bsh1236I	CGCG	1 cut(s)	608
BshFI	GGCC	1 cut(s)	671
BsiHKAI	GWGCWC	2 cut(s)	260, 737
BsiSI	CCGG	3 cut(s)	320, 593, 641
BslI	CCNNNNNNNGG	2 cut(s)	319, 592
BsnI	GGCC	1 cut(s)	671
Bsp1286I	GDGCHC	4 cut(s)	260, 314, 587, 737
Bsp143I	GATC	3 cut(s)	132, 163, 346
BspACI	CCGC	2 cut(s)	21, 603
BspANI	GGCC	1 cut(s)	671
BspCNI	CTCAG	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	608
BspLI	GGNNCC	3 cut(s)	696, 759, 825
BspMAI	CTGCAG	2 cut(s)	602, 997
BspPI	GGATC	1 cut(s)	158
BsrDI	GCAATG	2 cut(s)	400, 790
BsrI	ACTGG	3 cut(s)	470, 771, 923
BssECI	CCNNGG	3 cut(s)	328, 698, 827
BssMI	GATC	3 cut(s)	132, 163, 346
BssNI	GRCGYC	2 cut(s)	375, 648
BssSI	CACGAG	1 cut(s)	730
BssT1I	CCWWGG	1 cut(s)	827
Bst2BI	CACGAG	1 cut(s)	730
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	6 cut(s)	248, 262, 521, 719, 744, 848
BstACI	GRCGYC	2 cut(s)	375, 648
BstAPI	GCANNNNNTGC	1 cut(s)	582
BstBAI	YACGTR	2 cut(s)	271, 582
BstC8I	GCNNGC	2 cut(s)	62, 903
BstDEI	CTNAG	2 cut(s)	129, 337
BstF5I	GGATG	3 cut(s)	299, 368, 548
BstFNI	CGCG	1 cut(s)	608
BstHHI	GCGC	2 cut(s)	608, 812
BstKTI	GATC	3 cut(s)	135, 166, 349
BstMBI	GATC	3 cut(s)	132, 163, 346
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 45, 582
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	1 cut(s)	155
BstPAI	GACNNNNGTC	1 cut(s)	186
BstSCI	CCNGG	2 cut(s)	327, 639
BstSFI	CTRYAG	2 cut(s)	598, 993
BstSLI	GKGCMC	3 cut(s)	260, 314, 587
BstSNI	TACGTA	1 cut(s)	271
BstUI	CGCG	1 cut(s)	608
BstV1I	GCAGC	7 cut(s)	48, 51, 54, 57, 515, 543, 612
BstV2I	GAAGAC	3 cut(s)	182, 651, 888
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	760
BsuRI	GGCC	1 cut(s)	671
BtsCI	GGATG	3 cut(s)	299, 368, 548
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	3 cut(s)	258, 349, 740
Cac8I	GCNNGC	2 cut(s)	62, 903
CfoI	GCGC	2 cut(s)	608, 812
Cfr13I	GGNCC	1 cut(s)	694
Csp6I	GTAC	5 cut(s)	317, 413, 590, 622, 709
CviAII	CATG	3 cut(s)	152, 814, 853
CviJI	RGCY	5 cut(s)	469, 528, 556, 671, 972
CviKI_1	RGCY	5 cut(s)	469, 528, 556, 671, 972
CviQI	GTAC	5 cut(s)	317, 413, 590, 622, 709
DdeI	CTNAG	2 cut(s)	129, 337
DpnI	GATC	3 cut(s)	134, 165, 348
DpnII	GATC	3 cut(s)	132, 163, 346
Eco105I	TACGTA	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	827
Eco147I	AGGCCT	1 cut(s)	671
Eco47I	GGWCC	1 cut(s)	694
Eco57I	CTGAAG	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	827
ErhI	CCWWGG	1 cut(s)	827
FaeI	CATG	3 cut(s)	155, 817, 856
FatI	CATG	3 cut(s)	151, 813, 852
FauNDI	CATATG	1 cut(s)	449
Fnu4HI	GCNGC	8 cut(s)	37, 40, 43, 46, 529, 557, 601, 604
FokI	GGATG	3 cut(s)	286, 355, 535
Fsp4HI	GCNGC	8 cut(s)	37, 40, 43, 46, 529, 557, 601, 604
GlaI	GCGC	2 cut(s)	607, 811
GluI	GCNGC	8 cut(s)	37, 40, 43, 46, 529, 557, 601, 604
GsuI	CTGGAG	1 cut(s)	940
HaeIII	GGCC	1 cut(s)	671
HapII	CCGG	3 cut(s)	320, 593, 641
HhaI	GCGC	2 cut(s)	608, 812
Hin1I	GRCGYC	2 cut(s)	375, 648
Hin1II	CATG	3 cut(s)	155, 817, 856
Hin6I	GCGC	2 cut(s)	606, 810
HinP1I	GCGC	2 cut(s)	606, 810
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	6 cut(s)	199, 275, 407, 437, 485, 680
HpaI	GTTAAC	1 cut(s)	475
HpaII	CCGG	3 cut(s)	320, 593, 641
Hpy166II	GTNNAC	2 cut(s)	258, 475
Hpy188I	TCNGA	6 cut(s)	77, 132, 287, 373, 702, 861
Hpy188III	TCNNGA	2 cut(s)	206, 251
Hpy8I	GTNNAC	2 cut(s)	258, 475
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	4 cut(s)	100, 374, 454, 868
HpyCH4III	ACNGT	6 cut(s)	248, 262, 521, 719, 744, 848
HpyCH4IV	ACGT	5 cut(s)	270, 375, 581, 648, 948
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 45, 582
HpyF3I	CTNAG	2 cut(s)	129, 337
HpySE526I	ACGT	5 cut(s)	270, 375, 581, 648, 948
Hsp92I	GRCGYC	2 cut(s)	375, 648
Hsp92II	CATG	3 cut(s)	155, 817, 856
HspAI	GCGC	2 cut(s)	606, 810
KspAI	GTTAAC	1 cut(s)	475
Kzo9I	GATC	3 cut(s)	132, 163, 346
Lsp1109I	GCAGC	7 cut(s)	48, 51, 54, 57, 515, 543, 612
LweI	GCATC	1 cut(s)	557
MaeII	ACGT	5 cut(s)	270, 375, 581, 648, 948
MaeIII	GTNAC	3 cut(s)	179, 295, 568
MalI	GATC	3 cut(s)	134, 165, 348
MboI	GATC	3 cut(s)	132, 163, 346
MboII	GAAGA	5 cut(s)	154, 182, 656, 893, 919
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	4 cut(s)	260, 314, 587, 737
MluCI	AATT	8 cut(s)	53, 115, 539, 633, 803, 839, 934, 940
MlyI	GAGTC	2 cut(s)	416, 479
MmeI	TCCRAC	3 cut(s)	191, 396, 873
MnlI	CCTC	9 cut(s)	86, 696, 708, 748, 757, 798, 915, 918, 955
MseI	TTAA	5 cut(s)	264, 474, 492, 537, 750
MslI	CAYNNNNRTG	1 cut(s)	175
MspA1I	CMGCKG	2 cut(s)	21, 603
MspI	CCGG	3 cut(s)	320, 593, 641
MspR9I	CCNGG	2 cut(s)	329, 641
MvaI	CCWGG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	608
MwoI	GCNNNNNNNGC	3 cut(s)	42, 45, 582
NciI	CCSGG	1 cut(s)	641
NdeI	CATATG	1 cut(s)	449
NdeII	GATC	3 cut(s)	132, 163, 346
NlaIII	CATG	3 cut(s)	155, 817, 856
NlaIV	GGNNCC	3 cut(s)	696, 759, 825
NmeAIII	GCCGAG	1 cut(s)	716
NmuCI	GTSAC	3 cut(s)	179, 295, 568
NspI	RCATGY	1 cut(s)	155
PceI	AGGCCT	1 cut(s)	671
PciI	ACATGT	1 cut(s)	151
PfeI	GAWTC	4 cut(s)	199, 275, 437, 680
PflFI	GACNNNGTC	1 cut(s)	566
PfoI	TCCNGGA	1 cut(s)	639
PkrI	GCNGC	8 cut(s)	38, 41, 44, 47, 530, 558, 602, 605
PleI	GAGTC	2 cut(s)	415, 479
PpsI	GAGTC	2 cut(s)	415, 479
Ppu21I	YACGTR	2 cut(s)	271, 582
PscI	ACATGT	1 cut(s)	151
PshAI	GACNNNNGTC	1 cut(s)	186
PshBI	ATTAAT	1 cut(s)	750
Psp6I	CCWGG	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	3 cut(s)	696, 759, 825
PspPI	GGNCC	1 cut(s)	694
PstI	CTGCAG	2 cut(s)	602, 997
PsuI	RGATCY	1 cut(s)	132
PsyI	GACNNNGTC	1 cut(s)	566
RsaI	GTAC	5 cut(s)	318, 414, 591, 623, 710
RsaNI	GTAC	5 cut(s)	317, 413, 590, 622, 709
RseI	CAYNNNNRTG	1 cut(s)	175
SaqAI	TTAA	5 cut(s)	264, 474, 492, 537, 750
SatI	GCNGC	8 cut(s)	37, 40, 43, 46, 529, 557, 601, 604
Sau3AI	GATC	3 cut(s)	132, 163, 346
Sau96I	GGNCC	1 cut(s)	694
ScaI	AGTACT	2 cut(s)	623, 710
SchI	GAGTC	2 cut(s)	416, 479
ScrFI	CCNGG	2 cut(s)	329, 641
SduI	GDGCHC	4 cut(s)	260, 314, 587, 737
SfaNI	GCATC	1 cut(s)	557
SfcI	CTRYAG	2 cut(s)	598, 993
SinI	GGWCC	1 cut(s)	694
SmiMI	CAYNNNNRTG	1 cut(s)	175
SnaBI	TACGTA	1 cut(s)	271
Sse9I	AATT	8 cut(s)	53, 115, 539, 633, 803, 839, 934, 940
SseBI	AGGCCT	1 cut(s)	671
SsiI	CCGC	2 cut(s)	21, 603
StuI	AGGCCT	1 cut(s)	671
StyD4I	CCNGG	2 cut(s)	327, 639
StyI	CCWWGG	1 cut(s)	827
TaaI	ACNGT	6 cut(s)	248, 262, 521, 719, 744, 848
TaiI	ACGT	5 cut(s)	273, 378, 584, 651, 951
TaqI	TCGA	1 cut(s)	618
TasI	AATT	8 cut(s)	53, 115, 539, 633, 803, 839, 934, 940
TatI	WGTACW	3 cut(s)	412, 621, 708
TauI	GCSGC	1 cut(s)	606
TfiI	GAWTC	4 cut(s)	199, 275, 437, 680
Tru1I	TTAA	5 cut(s)	264, 474, 492, 537, 750
Tru9I	TTAA	5 cut(s)	264, 474, 492, 537, 750
TscAI	CASTG	3 cut(s)	265, 356, 747
TseFI	GTSAC	3 cut(s)	179, 295, 568
TseI	GCWGC	7 cut(s)	36, 39, 42, 45, 528, 556, 600
Tsp45I	GTSAC	3 cut(s)	179, 295, 568
TspDTI	ATGAA	3 cut(s)	191, 436, 532
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	3 cut(s)	265, 356, 747
Tth111I	GACNNNGTC	1 cut(s)	566
VneI	GTGCAC	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	694
VspI	ATTAAT	1 cut(s)	750
XapI	RAATTY	4 cut(s)	115, 539, 803, 839
XceI	RCATGY	1 cut(s)	155
ZraI	GACGTC	2 cut(s)	376, 649
ZrmI	AGTACT	2 cut(s)	623, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.