Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001855

Physical Location & Seq

Genomic Coordinates Forward (+)

5704409 .. 5706759

Gene Structure 2351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGAATGCTTCAAAGGGAGAGGCAAGAACATTTGAAGTTATGAAACGAAGCCGGCAGCCGGGTTTGGCTCATAACCGCAGTCAAACTTTTACATGTGATTTATGTGTTGAGCAAATGCATAAGGTACTCTTATTCAAGATCAAGGGTTGCACCCATTTTTACTGTGAAAAATGTATTGTTAAAATTGTTGAGTCCAACCTCGAATACAATGTCACAAACATTATGTGCCCCTTACCGGGCTGCAACGGCATGTTAGACCTTGAGTATTGCCGTCCAATTCTCCCACGCGCCGTCATTGACCGGTGGTGCAATGCCTTGAGAAGAAAAAAGATTATTACAGGGATTGACTACAAGTTGTTAATTATGATGGCACCAGATTGCCTTGTTATCTATGTTTTTATTGCAAGAGAGACTTCTGCGCTACTTGTAAGGTTGCTTGGCATACAGGATTTCATTGTACCAATAGCTATATATGAAGAGTGGATGGTGGAGAAGCTTGGGAAGAAAAGTAACTGGAAGAGGCGCGCAAGTTGCAATTACTACGTCGAAAAATCTGATGGGTGCGATAACATGAGATGCAGAATCATGAAAGAGAAAAAAGTTCGCATAGACTGGACGTCAGGTTGGGCTCCTAATTACCGACATGACGATATTAGTCAAAGTTCTTTTATATGTGATTTCTGTGTTGAGCCAACGGATGTGAAAGACATATTCAAGATAAGGGGTTGCAACCATTTTTACTGTCGTGAATGCGTTGTTAAATTCATAGTGTCCAAGCTCCAAGACAAAGTCACAAACATTAAGTGCCCCGTACCAGGCTGCATGGGCATGCTAGACCTTGAGTACAGTCGGAAAATTCTGCCAAACAACGTCTTTGATCGGTGGCGCAATGGCGTGTATAGGAAAAGGATTATGGAATCTAAGACTCACAAGTACTTCTACTGTCCCTTCAAGGATTGCTCAGCCATGTTAATATATAAGAATGACATGAAACCGAGTTGGTGGCTGTGTTCTCGTTGCAAAGGAGAGATCTGCGCTAGTTGTAAGGTTCCTTTGTTGGAGTATGAGTATGAGTTTGACATATTGAACCGGTTATATATTTGGAGAGCAATTGTGTTTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

375

Amino Acids

44.07

Weight (kDa)

8.99

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	302 - 351	2.4e-06	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53690
fragaria_vesca	FvH4_1g09420 FvH4_1g09451 FvH4_1g09452 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09454 FvH4_1g09930
malus_domestica	MD02G1103000.v1.1 MD02G1103200.v1.1 MD02G1103400.v1.1 MD02G1103500.v1.1 MD15G1224100.v1.1
prunus_persica	Prupe.7G191400_v2.0.a1
pyrus_communis	pycom02g08090 pycom02g08110 pycom02g08120 pycom15g19830
rosa_chinensis	RchiOBHm_Chr2g0095971 RchiOBHm_Chr2g0096011 RchiOBHm_Chr2g0096021 RchiOBHm_Chr2g0096031
rosa_laevigata	RLG00000016613 RLG00000016617 RLG00000016618 RLG00000016629
rosa_multiflora	Rmu_sc0002497.1_g000008 Rmu_sc0010976.1_g000014 Rmu_sc0010976.1_g000016 Rmu_sc0014387.1_g000005
rosa_roxburghii	Rroxscaffold_2G00145840 Rroxscaffold_2G00145850 Rroxscaffold_2G00145860 Rroxscaffold_2G00145900
rosa_rugosa	Rorug02G0055500 Rorug02G0055900
rosa_samantha	Rh2BG104900 Rh2BG105300 Rh2DG105300 Rh2DG105700 Rh2DG105800 Rh2DG105900
rosa_wichuraiana	Rw2G007880 Rw2G007930 Rw2G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	620
AccB1I	GGYRCC	1 cut(s)	370
AccII	CGCG	2 cut(s)	288, 525
AciI	CCGC	1 cut(s)	76
AcsI	RAATTY	2 cut(s)	761, 855
AcyI	GRCGYC	1 cut(s)	617
AfaI	GTAC	5 cut(s)	126, 459, 813, 845, 935
AfiI	CCNNNNNNNGG	4 cut(s)	58, 235, 236, 815
AflIII	ACRYGT	1 cut(s)	92
AgeI	ACCGGT	2 cut(s)	300, 1089
AgsI	TTSAA	6 cut(s)	12, 35, 136, 715, 952, 1087
AhdI	GACNNNNNGTC	1 cut(s)	616
AjnI	CCWGG	1 cut(s)	814
AluBI	AGCT	3 cut(s)	467, 496, 778
AluI	AGCT	3 cut(s)	467, 496, 778
Alw26I	GTCTC	1 cut(s)	404
ApeKI	GCWGC	3 cut(s)	55, 240, 819
ApoI	RAATTY	2 cut(s)	761, 855
ArsI	GACNNNNNNTTYG	2 cut(s)	195, 227
AsiGI	ACCGGT	2 cut(s)	300, 1089
AspLEI	GCGC	6 cut(s)	290, 421, 525, 527, 888, 1037
AsuC2I	CCSGG	2 cut(s)	60, 237
BaeGI	GKGCMC	2 cut(s)	230, 809
BanI	GGYRCC	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	631
BbvI	GCAGC	3 cut(s)	67, 227, 806
BccI	CCATC	3 cut(s)	361, 478, 551
BceAI	ACGGC	3 cut(s)	255, 262, 275
BciT130I	CCWGG	1 cut(s)	816
BcnI	CCSGG	2 cut(s)	60, 237
BcoDI	GTCTC	1 cut(s)	404
BfaI	CTAG	2 cut(s)	833, 1038
BglII	AGATCT	1 cut(s)	1029
BisI	GCNGC	3 cut(s)	56, 241, 820
BlpI	GCTNAGC	1 cut(s)	961
BlsI	GCNGC	3 cut(s)	57, 242, 821
BmcAI	AGTACT	1 cut(s)	935
Bme1390I	CCNGG	3 cut(s)	60, 237, 816
BmeRI	GACNNNNNGTC	1 cut(s)	616
BmiI	GGNNCC	3 cut(s)	372, 630, 1050
BmrFI	CCNGG	3 cut(s)	60, 237, 816
BmsI	GCATC	1 cut(s)	566
Bpu1102I	GCTNAGC	1 cut(s)	961
BpuEI	CTTGAG	3 cut(s)	281, 337, 860
BpuMI	CCSGG	2 cut(s)	60, 237
BsaHI	GRCGYC	1 cut(s)	617
BsaWI	WCCGGW	2 cut(s)	300, 1089
BsaXI	ACNNNNNCTCC	2 cut(s)	1052, 1082
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 235, 236, 815
Bse118I	RCCGGY	3 cut(s)	51, 300, 1089
Bse1I	ACTGG	2 cut(s)	518, 617
Bse3DI	GCAATG	2 cut(s)	316, 895
BseBI	CCWGG	1 cut(s)	816
BseGI	GGATG	2 cut(s)	489, 703
BseLI	CCNNNNNNNGG	4 cut(s)	58, 235, 236, 815
BseMI	GCAATG	2 cut(s)	316, 895
BseMII	CTCAG	1 cut(s)	975
BseNI	ACTGG	2 cut(s)	518, 617
BsePI	GCGCGC	1 cut(s)	523
BseSI	GKGCMC	2 cut(s)	230, 809
BseXI	GCAGC	3 cut(s)	67, 227, 806
Bsh1236I	CGCG	2 cut(s)	288, 525
BshNI	GGYRCC	1 cut(s)	370
BshTI	ACCGGT	2 cut(s)	300, 1089
BsiSI	CCGG	5 cut(s)	52, 59, 236, 301, 1090
BslFI	GGGAC	1 cut(s)	930
BslI	CCNNNNNNNGG	4 cut(s)	58, 235, 236, 815
BsmAI	GTCTC	1 cut(s)	404
BsmFI	GGGAC	1 cut(s)	930
BsmI	GAATGC	2 cut(s)	10, 755
Bsp1286I	GDGCHC	3 cut(s)	230, 631, 809
Bsp143I	GATC	3 cut(s)	138, 877, 1029
Bsp1720I	GCTNAGC	1 cut(s)	961
BspACI	CCGC	1 cut(s)	76
BspCNI	CTCAG	1 cut(s)	974
BspFNI	CGCG	2 cut(s)	288, 525
BspHI	TCATGA	1 cut(s)	585
BspLI	GGNNCC	3 cut(s)	372, 630, 1050
BspT107I	GGYRCC	1 cut(s)	370
BsrDI	GCAATG	2 cut(s)	316, 895
BsrFI	RCCGGY	3 cut(s)	51, 300, 1089
BsrI	ACTGG	2 cut(s)	518, 617
BssAI	RCCGGY	3 cut(s)	51, 300, 1089
BssHII	GCGCGC	1 cut(s)	523
BssMI	GATC	3 cut(s)	138, 877, 1029
BssNI	GRCGYC	1 cut(s)	617
Bst2UI	CCWGG	1 cut(s)	816
Bst4CI	ACNGT	4 cut(s)	164, 743, 848, 944
Bst6I	CTCTTC	2 cut(s)	471, 512
BstACI	GRCGYC	1 cut(s)	617
BstC8I	GCNNGC	3 cut(s)	53, 525, 830
BstDEI	CTNAG	2 cut(s)	921, 961
BstF5I	GGATG	2 cut(s)	489, 703
BstFNI	CGCG	2 cut(s)	288, 525
BstHHI	GCGC	6 cut(s)	290, 421, 525, 527, 888, 1037
BstKTI	GATC	3 cut(s)	141, 880, 1032
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	3 cut(s)	138, 877, 1029
BstMWI	GCNNNNNNNGC	3 cut(s)	246, 531, 825
BstNI	CCWGG	1 cut(s)	816
BstNSI	RCATGY	3 cut(s)	96, 253, 832
BstSCI	CCNGG	3 cut(s)	58, 235, 814
BstSLI	GKGCMC	2 cut(s)	230, 809
BstUI	CGCG	2 cut(s)	288, 525
BstV1I	GCAGC	3 cut(s)	67, 227, 806
BstX2I	RGATCY	1 cut(s)	1029
BstYI	RGATCY	1 cut(s)	1029
BtsCI	GGATG	2 cut(s)	489, 703
Cac8I	GCNNGC	3 cut(s)	53, 525, 830
CciI	TCATGA	1 cut(s)	585
CfoI	GCGC	6 cut(s)	290, 421, 525, 527, 888, 1037
Cfr10I	RCCGGY	3 cut(s)	51, 300, 1089
Csp6I	GTAC	5 cut(s)	125, 458, 812, 844, 934
CspAI	ACCGGT	2 cut(s)	300, 1089
CviAII	CATG	9 cut(s)	93, 250, 571, 586, 644, 823, 829, 967, 988
CviQI	GTAC	5 cut(s)	125, 458, 812, 844, 934
DdeI	CTNAG	2 cut(s)	921, 961
DpnI	GATC	3 cut(s)	140, 879, 1031
DpnII	GATC	3 cut(s)	138, 877, 1029
DriI	GACNNNNNGTC	1 cut(s)	616
Eam1104I	CTCTTC	2 cut(s)	471, 512
Eam1105I	GACNNNNNGTC	1 cut(s)	616
EarI	CTCTTC	2 cut(s)	471, 512
Eco24I	GRGCYC	1 cut(s)	631
EcoRII	CCWGG	1 cut(s)	814
EcoT22I	ATGCAT	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	631
FaeI	CATG	9 cut(s)	96, 253, 574, 589, 647, 826, 832, 970, 991
FalI	AAGNNNNNCTT	4 cut(s)	113, 145, 397, 429
FaqI	GGGAC	1 cut(s)	930
FatI	CATG	9 cut(s)	92, 249, 570, 585, 643, 822, 828, 966, 987
Fnu4HI	GCNGC	3 cut(s)	56, 241, 820
FokI	GGATG	2 cut(s)	496, 710
FriOI	GRGCYC	1 cut(s)	631
Fsp4HI	GCNGC	3 cut(s)	56, 241, 820
FspBI	CTAG	2 cut(s)	833, 1038
GlaI	GCGC	6 cut(s)	289, 420, 524, 526, 887, 1036
GluI	GCNGC	3 cut(s)	56, 241, 820
HapII	CCGG	5 cut(s)	52, 59, 236, 301, 1090
HhaI	GCGC	6 cut(s)	290, 421, 525, 527, 888, 1037
Hin1I	GRCGYC	1 cut(s)	617
Hin1II	CATG	9 cut(s)	96, 253, 574, 589, 647, 826, 832, 970, 991
Hin6I	GCGC	6 cut(s)	288, 419, 523, 525, 886, 1035
HinP1I	GCGC	6 cut(s)	288, 419, 523, 525, 886, 1035
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	4 cut(s)	191, 582, 917, 925
HpaII	CCGG	5 cut(s)	52, 59, 236, 301, 1090
Hpy188I	TCNGA	2 cut(s)	556, 852
Hpy188III	TCNNGA	4 cut(s)	136, 586, 715, 746
Hpy99I	CGWCG	1 cut(s)	548
HpyAV	CCTTC	1 cut(s)	958
HpyCH4III	ACNGT	4 cut(s)	164, 743, 848, 944
HpyCH4IV	ACGT	3 cut(s)	543, 617, 870
HpyF10VI	GCNNNNNNNGC	3 cut(s)	246, 531, 825
HpyF3I	CTNAG	2 cut(s)	921, 961
HpySE526I	ACGT	3 cut(s)	543, 617, 870
Hsp92I	GRCGYC	1 cut(s)	617
Hsp92II	CATG	9 cut(s)	96, 253, 574, 589, 647, 826, 832, 970, 991
HspAI	GCGC	6 cut(s)	288, 419, 523, 525, 886, 1035
KroI	GCCGGC	1 cut(s)	51
KroNI	GCCGGC	1 cut(s)	53
Kzo9I	GATC	3 cut(s)	138, 877, 1029
LmnI	GCTCC	2 cut(s)	634, 783
Lsp1109I	GCAGC	3 cut(s)	67, 227, 806
LweI	GCATC	1 cut(s)	566
MaeI	CTAG	2 cut(s)	833, 1038
MaeII	ACGT	3 cut(s)	543, 617, 870
MaeIII	GTNAC	3 cut(s)	211, 509, 790
MalI	GATC	3 cut(s)	140, 879, 1031
MboI	GATC	3 cut(s)	138, 877, 1029
MboII	GAAGA	4 cut(s)	333, 488, 514, 529
MfeI	CAATTG	1 cut(s)	1110
MflI	RGATCY	1 cut(s)	1029
MhlI	GDGCHC	3 cut(s)	230, 631, 809
MluCI	AATT	8 cut(s)	183, 276, 360, 535, 634, 761, 855, 1110
MlyI	GAGTC	2 cut(s)	200, 919
MmeI	TCCRAC	3 cut(s)	219, 830, 1038
MnlI	CCTC	3 cut(s)	13, 209, 513
Mph1103I	ATGCAT	1 cut(s)	120
MroNI	GCCGGC	1 cut(s)	51
MseI	TTAA	5 cut(s)	180, 359, 759, 801, 971
MslI	CAYNNNNRTG	1 cut(s)	827
MspI	CCGG	5 cut(s)	52, 59, 236, 301, 1090
MspR9I	CCNGG	3 cut(s)	60, 237, 816
MunI	CAATTG	1 cut(s)	1110
Mva1269I	GAATGC	2 cut(s)	10, 755
MvaI	CCWGG	1 cut(s)	816
MvnI	CGCG	2 cut(s)	288, 525
MwoI	GCNNNNNNNGC	3 cut(s)	246, 531, 825
NaeI	GCCGGC	1 cut(s)	53
NciI	CCSGG	2 cut(s)	60, 237
NdeII	GATC	3 cut(s)	138, 877, 1029
NgoMIV	GCCGGC	1 cut(s)	51
NlaIII	CATG	9 cut(s)	96, 253, 574, 589, 647, 826, 832, 970, 991
NlaIV	GGNNCC	3 cut(s)	372, 630, 1050
NmuCI	GTSAC	2 cut(s)	211, 790
NsiI	ATGCAT	1 cut(s)	120
NspI	RCATGY	3 cut(s)	96, 253, 832
PaeI	GCATGC	1 cut(s)	832
PagI	TCATGA	1 cut(s)	585
PauI	GCGCGC	1 cut(s)	523
PciI	ACATGT	1 cut(s)	92
PctI	GAATGC	2 cut(s)	10, 755
PdiI	GCCGGC	1 cut(s)	53
PfeI	GAWTC	2 cut(s)	582, 917
PflFI	GACNNNGTC	1 cut(s)	788
PinAI	ACCGGT	2 cut(s)	300, 1089
PkrI	GCNGC	3 cut(s)	57, 242, 821
PleI	GAGTC	2 cut(s)	199, 919
PpsI	GAGTC	2 cut(s)	199, 919
PscI	ACATGT	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	814
PspGI	CCWGG	1 cut(s)	814
PspN4I	GGNNCC	3 cut(s)	372, 630, 1050
PsuI	RGATCY	1 cut(s)	1029
PsyI	GACNNNGTC	1 cut(s)	788
PteI	GCGCGC	1 cut(s)	523
RsaI	GTAC	5 cut(s)	126, 459, 813, 845, 935
RsaNI	GTAC	5 cut(s)	125, 458, 812, 844, 934
RseI	CAYNNNNRTG	1 cut(s)	827
SaqAI	TTAA	5 cut(s)	180, 359, 759, 801, 971
SatI	GCNGC	3 cut(s)	56, 241, 820
Sau3AI	GATC	3 cut(s)	138, 877, 1029
ScaI	AGTACT	1 cut(s)	935
SchI	GAGTC	2 cut(s)	200, 919
ScrFI	CCNGG	3 cut(s)	60, 237, 816
SduI	GDGCHC	3 cut(s)	230, 631, 809
SfaNI	GCATC	1 cut(s)	566
SmiMI	CAYNNNNRTG	1 cut(s)	827
SmlI	CTYRAG	3 cut(s)	260, 316, 839
SmoI	CTYRAG	3 cut(s)	260, 316, 839
SphI	GCATGC	1 cut(s)	832
Sse9I	AATT	8 cut(s)	183, 276, 360, 535, 634, 761, 855, 1110
SsiI	CCGC	1 cut(s)	76
SspMI	CTAG	2 cut(s)	833, 1038
StyD4I	CCNGG	3 cut(s)	58, 235, 814
TaaI	ACNGT	4 cut(s)	164, 743, 848, 944
TaiI	ACGT	3 cut(s)	546, 620, 873
TaqI	TCGA	2 cut(s)	201, 546
TasI	AATT	8 cut(s)	183, 276, 360, 535, 634, 761, 855, 1110
TatI	WGTACW	2 cut(s)	843, 933
TfiI	GAWTC	2 cut(s)	582, 917
Tru1I	TTAA	5 cut(s)	180, 359, 759, 801, 971
Tru9I	TTAA	5 cut(s)	180, 359, 759, 801, 971
TseFI	GTSAC	2 cut(s)	211, 790
TseI	GCWGC	3 cut(s)	55, 240, 819
Tsp45I	GTSAC	2 cut(s)	211, 790
TspDTI	ATGAA	7 cut(s)	17, 56, 442, 489, 602, 754, 1004
TspGWI	ACGGA	1 cut(s)	710
Tth111I	GACNNNGTC	1 cut(s)	788
XapI	RAATTY	2 cut(s)	761, 855
XceI	RCATGY	3 cut(s)	96, 253, 832
XspI	CTAG	2 cut(s)	833, 1038
ZraI	GACGTC	1 cut(s)	618
ZrmI	AGTACT	1 cut(s)	935
Zsp2I	ATGCAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.