pycom02g13590

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000554
Physical Location & Seq
Forward (+)
10126205 .. 10137842
11638 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g13590.1

Sequence Viewer

Length: 2703 bp
ATGCCTAATTCTGCCTCTAGACCATCCCTTATTGGCCAAGCACCGCCTTCGTCAGCCCCTCCTGCTGGGGCTCCCGTTGCACCTCCCCCTTTTTCGCGGCCTGGCCCTCTCCCCGCTGCCCTTGCAAGACCTGCGGCACCTCGATCAGGATCCCCACAACCAACGTTATCCCCTGCCACCACCCCAGTAAGGTCAACTGGGCCGCCTGTTGGCCAGCCTTTGTCTTTTGTGTCTAGACCGCCTCCTGGGTCGTTTCCCCCTGTGGGTGGGGTAGCTCCAGCTTCTGGGCCACCACCTGGTCCTTTTCATACGTCAGGTTTACCTAGCGGTCCAGTTTCAGTACCGCCACCAGCATCAGGTCCTCGCCCAGGTCCTGGTTCTTTTCCTTTGGGTAGCGGTCAGAGCATGCCTCCTACGACTGCACCAGGTAGATTGATGAGTAATGGGCCACCGGTGTTTGGTTCTGGAGCTATGTTGGGTGGGCCTCGTTTCCCTCCAAGTGGAAATGCACCTCAACCACCTTTTGGACATCCACCAACAGTGGCAACGGCAACAGGTCCTCCTCGAACGCCGACCATGCACTCTATGCTAGGCACTCCAGCAGTTAGTGCTCCACCAGGTCCTGTTCAGCAGGCACCACCATTTTCAGCAGCACCACCATTTTCAGTGGCACCACTATTTTCAGCGGCACCACCAAGCATGCAGGCACCTCCGGTTTCTCCCTATGGCTCACAGACATGGCCAATGCAACAAGGGCAGGTGGCTCCACCTTCCCAATTTCCTGGTTCTGTTCAGTCACCCAGAATGTTTGGAATGCCGCCCCCACCACTACCAAATCAGTCCATGGCCACTATCTCACCTGCAGTTGGTCAAACTGGATCTCCTTTGACTGGGTCATCGAAGATAGATCCGAATCAAATTCCTCGGCCTGTACCAGGTTCGTCGGTGCTCATCCATGAAACTCGTCAGGGCAATCAGGCAAATCCACCTCCGCCTGCTACAAGTGATTATATTGTCAGAGACAATGGGAATTGCAGTCCACGTTACATGAGGTGTACAATCAATCAGATACCATGCACGGCTGATCTTTTGACAACATCAGGGATGCCCTTAGCTTTGTTGGTTGAACCATTTTCCCTTCCTCATCCAGATGAAGAACCAATCCAAGTTGTGGATTTTGGTGAAAGTGGTCCTGTTCGATGCTCTCGTTGCAAAGGCTACATAAATCCTTTCATGAAGTTCATTGACCAGGGCAGGAAATTCATATGTAACCTGTGTGGATTTACTGATGAGACTCCTCATGACTACCACTGCAATCTTGGTCCAGATGGTAGACGTAGAGATGCTGATGAAAGGCCTGAGCTATGTAGGGGAACAGTTGAATTTGTTGCTTCAAAAGAATACATGGTGCGTGATCCCATGCCAGCTGTGTACTTCTTTCTCATTGATGTGTCCATGAATGCTATTCAAACTGGTGCAACTGCTGCAGCTTGCAGTGCAATCAGTCAAGTTATTGCTGACCTTCCTGAAGGTCCTCGGACAATGGTGGGAGTTGCAACATTTGACGCAACAATCCATTTTTACAATTTGAAACGTGCACTGCAGCAGCCTTTGATGCTTATTGTTCCTGATGTGCAAGATGTTTACACTCCTCTGGAGACTGATGTGGTTGTTCAGCTCTCGGAGGCTGCTTTCTTGGCAATGAAGAGTACCGGAGGGAAACTTTTGGTGTTTCAGTCAGTGCTGGCCTCAACTGGAATTGGAGCCCTCTCTGCTAGAGAGGCTGAAGGAAGGGCTAATATATCTTCAGCTGAGAAGGAGGCCCATAAATTACTCCAACCAGCAGACAAAACTTTAAAGGCAATGGCAATTGAATTGGCTGAATTTCAGGTGTGTGTCGACTTATTTATCACTACCCAGTCATACATAGACATTGCTTCTATCTCTGTCATCCCAAGAACAACTGGAGGGCAGGTTTACTATTATTACCCCTTCTCAGCTGTCTCTGATCCTGCAAAGCTCTACAATGATCTTAGATGGAATGTCACAAGAACTCAAGGTTTTGAGGGGGTGATGCGTGTAAGATGCAGCCAGGGTATTCAAGTTCAAGAGTACCATGGGAGTTTTTGCAAACGTATCCCTACGGATGTTGATGTACCTGGGATTGACTCTGATAAAACTATTATGGTGACCTTAAAACATGATGATAAATTACAGGATGGCTCAGAATGTGGTTTCCAGTGTGCCCTTTTATACACAACTGTGTATGGCCAACGGAGAATTCGAGTTACAACTTTGTCTCTGCCATGCACAAGTATGCTAAGTAATCTGTTTCGTGCTGCTGATTTGGACACTCAATTTGCATGTTTCATGAAGCAAGCGGCAAACGAAATTCCTTCAAGTGCTCTCTTGCGTGTACGGGAACAAGTTACAAATCTATGCATCAGTAGTCTTCTGTCATATCGTAAATTTTGTGCTACTGTATCATCTTCTGGACAGCTTATTCTTCCGGAGGCACTGAAGCTCCTGCCTCTATACACCCTCGCATTAATCAAAAGTACAGGGCTACGAAGTGATGGAAAAATAGATGAGCGGTCCTTCTGGATCAACCATGTTTCTTCCCTTTCTGTTCCTTTGGCAGTTCCACTGGTGTACCCCAGAATGGTGGCCATTCATCGATCTCGAATCCAAAAAGGAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

901

Amino Acids

95.51

Weight (kDa)

8.67

Isoelectric Point (pI)

55.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Sec23_Sec24 PF04810 398 - 436 9.6e-17 Sec23/Sec24 zinc finger
Sec23_trunk PF04811 473 - 564 1.3e-28 Sec23/Sec24 trunk domain
Sec23_trunk PF04811 563 - 682 2.1e-29 Sec23/Sec24 trunk domain
Sec23_BS PF08033 687 - 771 7.5e-27 Sec23/Sec24 beta-sandwich domain
Sec23_helical PF04815 782 - 880 1.9e-24 Sec23/Sec24 helical domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000554)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT4G32640 AT4G32640
fragaria_vesca FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000
malus_domestica MD02G1169200.v1.1 MD13G1230500.v1.1 MD15G1281700.v1.1 MD16G1009900.v1.1 MD16G1235300.v1.1
prunus_persica Prupe.1G056500_v2.0.a1 Prupe.1G056500_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1
pyrus_communis pycom02g13590 pycom13g20290 pycom15g24480 pycom16g00970 pycom16g19630
rosa_chinensis RchiOBHm_Chr4g0396591 RchiOBHm_Chr4g0445631
rosa_laevigata RLG00000005723 RLG00000009518
rosa_multiflora Rmu_co8031254.1_g000001 Rmu_co8351119.1_g000001 Rmu_sc0003637.1_g000024 Rmu_sc0010969.1_g000001 Rmu_sc0019383.1_g000002
rosa_roxburghii Rroxscaffold_5G00341440 Rroxscaffold_5G00386110
rosa_rugosa Rorug03G0348600 Rorug03G0348700 Rorug04G0363200 Rorug04G0363300 Rorug04G0363400 Rorug04G0363500
rosa_samantha Rh4AG070600 Rh4AG424700 Rh4AG425100 Rh4BG068500 Rh4BG436900 Rh4CG076300 Rh4CG451400 Rh4DG065600 Rh4DG433400
rosa_wichuraiana Rw4G005630 Rw4G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 748, 868
Acc36I ACCTGC 4 cut(s) 139, 748, 868, 1963
AccB1I GGYRCC 5 cut(s) 136, 634, 670, 688, 706
AccB7I CCANNNNNTGG 5 cut(s) 284, 296, 374, 524, 1171
AccBSI CCGCTC 1 cut(s) 2593
AccI GTMKAC 2 cut(s) 1333, 1899
AccII CGCG 1 cut(s) 97
AccIII TCCGGA 1 cut(s) 2509
AclI AACGTT 1 cut(s) 164
AclWI GGATC 7 cut(s) 144, 157, 886, 902, 1409, 2003, 2612
AcoI YGGCCR 6 cut(s) 34, 211, 740, 846, 2269, 2667
AcsI RAATTY 7 cut(s) 918, 1259, 1382, 1883, 2280, 2391, 2468
AcuI CTGAAG 4 cut(s) 1548, 1791, 1806, 2540
AgeI ACCGGT 1 cut(s) 451
AgsI TTSAA 9 cut(s) 1127, 1382, 1395, 1469, 1591, 1874, 2102, 2108, 2400
AjuI GAANNNNNNNTTGG 2 cut(s) 2265, 2297
AleI CACNNNNGTG 1 cut(s) 2261
Alw21I GWGCWC 4 cut(s) 613, 951, 1600, 2407
Alw26I GTCTC 5 cut(s) 1014, 1286, 1652, 2008, 2304
Alw44I GTGCAC 1 cut(s) 1596
AlwI GGATC 7 cut(s) 144, 157, 886, 902, 1409, 2003, 2612
AlwNI CAGNNNCTG 3 cut(s) 284, 374, 623
Aor13HI TCCGGA 1 cut(s) 2509
ApaLI GTGCAC 1 cut(s) 1596
ApeKI GCWGC 9 cut(s) 116, 650, 1484, 1487, 1603, 1606, 1688, 2088, 2339
ApoI RAATTY 7 cut(s) 918, 1259, 1382, 1883, 2280, 2391, 2468
ArsI GACNNNNNNTTYG 2 cut(s) 2342, 2374
AseI ATTAAT 1 cut(s) 2549
AsiGI ACCGGT 1 cut(s) 451
AsuHPI GGTGA 5 cut(s) 789, 849, 1193, 2083, 2200
BaeGI GKGCMC 2 cut(s) 1600, 2248
BaeI ACNNNNGTAYC 2 cut(s) 2636, 2669
BalI TGGCCA 6 cut(s) 36, 213, 742, 848, 2271, 2669
BamHI GGATCC 1 cut(s) 149
BanI GGYRCC 5 cut(s) 136, 634, 670, 688, 706
BanII GRGCYC 2 cut(s) 73, 1768
BbsI GAAGAC 1 cut(s) 2444
Bbv12I GWGCWC 4 cut(s) 613, 951, 1600, 2407
BbvI GCAGC 9 cut(s) 103, 662, 1471, 1499, 1615, 1618, 1675, 2100, 2326
BccI CCATC 5 cut(s) 31, 1322, 2031, 2213, 2570
BceAI ACGGC 2 cut(s) 564, 1095
BcgI CGANNNNNNTGC 2 cut(s) 30, 64
BciVI GTATCC 1 cut(s) 2147
BcoDI GTCTC 5 cut(s) 1014, 1286, 1652, 2008, 2304
BfaI CTAG 5 cut(s) 18, 234, 324, 590, 1776
BfmI CTRYAG 3 cut(s) 861, 1485, 1601
BfuAI ACCTGC 4 cut(s) 139, 748, 868, 1963
BfuI GTATCC 1 cut(s) 2147
BmiI GGNNCC 9 cut(s) 72, 138, 151, 636, 672, 690, 708, 765, 1765
BmrI ACTGGG 4 cut(s) 179, 207, 900, 1912
BmsI GCATC 8 cut(s) 362, 1095, 1190, 1333, 1605, 2064, 2075, 2451
BmuI ACTGGG 4 cut(s) 179, 207, 900, 1912
BpiI GAAGAC 1 cut(s) 2444
BplI GAGNNNNNCTC 2 cut(s) 394, 426
BpmI CTGGAG 5 cut(s) 261, 486, 582, 1676, 1986
Bpu10I CCTNAGC 2 cut(s) 1111, 1359
BpuEI CTTGAG 1 cut(s) 2040
Bsa29I ATCGAT 1 cut(s) 2677
BsaBI GATNNNNATC 2 cut(s) 148, 912
BsaJI CCNNGG 9 cut(s) 245, 367, 843, 923, 1249, 1535, 2092, 2116, 2159
BsaWI WCCGGW 4 cut(s) 451, 712, 1712, 2509
BsaXI ACNNNNNCTCC 8 cut(s) 544, 574, 865, 895, 1959, 1989, 2508, 2538
Bse118I RCCGGY 1 cut(s) 451
Bse3DI GCAATG 3 cut(s) 1707, 1869, 1932
Bse8I GATNNNNATC 2 cut(s) 148, 912
BseAI TCCGGA 1 cut(s) 2509
BseCI ATCGAT 1 cut(s) 2677
BseDI CCNNGG 9 cut(s) 245, 367, 843, 923, 1249, 1535, 2092, 2116, 2159
BseGI GGATG 8 cut(s) 23, 529, 951, 1110, 1144, 1950, 2152, 2224
BseJI GATNNNNATC 2 cut(s) 148, 912
BseMI GCAATG 3 cut(s) 1707, 1869, 1932
BseMII CTCAG 4 cut(s) 1350, 1803, 2010, 2238
BseRI GAGGAG 3 cut(s) 552, 1287, 1641
BseSI GKGCMC 2 cut(s) 1600, 2248
BseXI GCAGC 9 cut(s) 103, 662, 1471, 1499, 1615, 1618, 1675, 2100, 2326
BseYI CCCAGC 1 cut(s) 65
BsgI GTGCAG 1 cut(s) 405
Bsh1236I CGCG 1 cut(s) 97
BshNI GGYRCC 5 cut(s) 136, 634, 670, 688, 706
BshTI ACCGGT 1 cut(s) 451
BshVI ATCGAT 1 cut(s) 2677
BsiHKAI GWGCWC 4 cut(s) 613, 951, 1600, 2407
BsiSI CCGG 4 cut(s) 452, 713, 1713, 2510
BsmAI GTCTC 5 cut(s) 1014, 1286, 1652, 2008, 2304
BsmI GAATGC 2 cut(s) 819, 1465
Bsp1286I GDGCHC 7 cut(s) 73, 613, 951, 1600, 1768, 2248, 2407
Bsp13I TCCGGA 1 cut(s) 2509
Bsp1407I TGTACA 1 cut(s) 1055
Bsp19I CCATGG 2 cut(s) 843, 2116
BspCNI CTCAG 4 cut(s) 1351, 1804, 2009, 2237
BspDI ATCGAT 1 cut(s) 2677
BspEI TCCGGA 1 cut(s) 2509
BspFNI CGCG 1 cut(s) 97
BspHI TCATGA 3 cut(s) 1233, 1300, 2370
BspLI GGNNCC 9 cut(s) 72, 138, 151, 636, 672, 690, 708, 765, 1765
BspMAI CTGCAG 3 cut(s) 865, 1489, 1605
BspMI ACCTGC 4 cut(s) 139, 748, 868, 1963
BspPI GGATC 7 cut(s) 144, 157, 886, 902, 1409, 2003, 2612
BspT107I GGYRCC 5 cut(s) 136, 634, 670, 688, 706
BsrBI CCGCTC 1 cut(s) 2593
BsrDI GCAATG 3 cut(s) 1707, 1869, 1932
BsrFI RCCGGY 1 cut(s) 451
BsrGI TGTACA 1 cut(s) 1055
BssAI RCCGGY 1 cut(s) 451
BssECI CCNNGG 9 cut(s) 245, 367, 843, 923, 1249, 1535, 2092, 2116, 2159
BssT1I CCWWGG 2 cut(s) 843, 2116
Bst4CI ACNGT 4 cut(s) 541, 1378, 2263, 2482
Bst6I CTCTTC 1 cut(s) 1700
BstAPI GCANNNNNTGC 4 cut(s) 131, 586, 608, 1484
BstAUI TGTACA 1 cut(s) 1055
BstDEI CTNAG 7 cut(s) 1111, 1359, 1812, 1996, 2033, 2224, 2321
BstDSI CCRYGG 2 cut(s) 843, 2116
BstEII GGTNACC 1 cut(s) 2188
BstENI CCTNNNNNAGG 3 cut(s) 144, 366, 933
BstF5I GGATG 8 cut(s) 23, 529, 951, 1110, 1144, 1950, 2152, 2224
BstFNI CGCG 1 cut(s) 97
BstMAI GTCTC 5 cut(s) 1014, 1286, 1652, 2008, 2304
BstNSI RCATGY 3 cut(s) 409, 703, 2367
BstPI GGTNACC 1 cut(s) 2188
BstSFI CTRYAG 3 cut(s) 861, 1485, 1601
BstSLI GKGCMC 2 cut(s) 1600, 2248
BstUI CGCG 1 cut(s) 97
BstV1I GCAGC 9 cut(s) 103, 662, 1471, 1499, 1615, 1618, 1675, 2100, 2326
BstV2I GAAGAC 1 cut(s) 2444
BstX2I RGATCY 3 cut(s) 149, 878, 907
BstXI CCANNNNNNTGG 2 cut(s) 782, 2665
BstYI RGATCY 3 cut(s) 149, 878, 907
Bsu15I ATCGAT 1 cut(s) 2677
BsuI GTATCC 1 cut(s) 2147
BsuTUI ATCGAT 1 cut(s) 2677
BtgI CCRYGG 2 cut(s) 843, 2116
BtsCI GGATG 8 cut(s) 23, 529, 951, 1110, 1144, 1950, 2152, 2224
BtsI GCAGTG 3 cut(s) 1309, 1501, 1598
BtsIMutI CAGTG 9 cut(s) 546, 672, 1309, 1501, 1598, 1746, 2246, 2516, 2645
BveI ACCTGC 4 cut(s) 139, 748, 868, 1963
CaiI CAGNNNCTG 3 cut(s) 284, 374, 623
CciI TCATGA 3 cut(s) 1233, 1300, 2370
Cfr10I RCCGGY 1 cut(s) 451
ClaI ATCGAT 1 cut(s) 2677
CseI GACGC 1 cut(s) 1574
CsiI ACCWGGT 4 cut(s) 295, 424, 616, 934
CspAI ACCGGT 1 cut(s) 451
DdeI CTNAG 7 cut(s) 1111, 1359, 1812, 1996, 2033, 2224, 2321
DraI TTTAAA 1 cut(s) 1857
EaeI YGGCCR 6 cut(s) 34, 211, 740, 846, 2269, 2667
Eam1104I CTCTTC 1 cut(s) 1700
EarI CTCTTC 1 cut(s) 1700
EciI GGCGGA 1 cut(s) 981
Eco130I CCWWGG 2 cut(s) 843, 2116
Eco147I AGGCCT 1 cut(s) 1357
Eco24I GRGCYC 2 cut(s) 73, 1768
Eco57I CTGAAG 4 cut(s) 1548, 1791, 1806, 2540
Eco91I GGTNACC 1 cut(s) 2188
EcoNI CCTNNNNNAGG 3 cut(s) 144, 366, 933
EcoO109I RGGNCCY 5 cut(s) 359, 371, 557, 620, 1532
EcoO65I GGTNACC 1 cut(s) 2188
EcoRI GAATTC 1 cut(s) 2280
EcoT14I CCWWGG 2 cut(s) 843, 2116
EcoT22I ATGCAT 1 cut(s) 2444
EcoT38I GRGCYC 2 cut(s) 73, 1768
ErhI CCWWGG 2 cut(s) 843, 2116
FauI CCCGC 1 cut(s) 121
FauNDI CATATG 1 cut(s) 1265
FblI GTMKAC 2 cut(s) 1333, 1899
FokI GGATG 8 cut(s) 10, 516, 938, 1117, 1131, 1937, 2159, 2231
FriOI GRGCYC 2 cut(s) 73, 1768
FspBI CTAG 5 cut(s) 18, 234, 324, 590, 1776
GsaI CCCAGC 1 cut(s) 69
GsuI CTGGAG 5 cut(s) 261, 486, 582, 1676, 1986
HapII CCGG 4 cut(s) 452, 713, 1713, 2510
HgaI GACGC 1 cut(s) 1574
HincII GTYRAC 2 cut(s) 195, 1900
HindII GTYRAC 2 cut(s) 195, 1900
HinfI GANTC 4 cut(s) 913, 1294, 2168, 2685
HpaII CCGG 4 cut(s) 452, 713, 1713, 2510
HphI GGTGA 5 cut(s) 789, 849, 1193, 2083, 2200
Hpy188I TCNGA 9 cut(s) 402, 912, 1019, 1068, 1539, 1684, 2008, 2173, 2227
Hpy99I CGWCG 1 cut(s) 946
HpyCH4III ACNGT 4 cut(s) 541, 1378, 2263, 2482
HpyCH4IV ACGT 6 cut(s) 164, 311, 1042, 1336, 1594, 2134
HpyF3I CTNAG 7 cut(s) 1111, 1359, 1812, 1996, 2033, 2224, 2321
HpySE526I ACGT 6 cut(s) 164, 311, 1042, 1336, 1594, 2134
Kpn2I TCCGGA 1 cut(s) 2509
LmnI GCTCC 7 cut(s) 76, 280, 467, 616, 769, 1763, 2529
Lsp1109I GCAGC 9 cut(s) 103, 662, 1471, 1499, 1615, 1618, 1675, 2100, 2326
LweI GCATC 8 cut(s) 362, 1095, 1190, 1333, 1605, 2064, 2075, 2451
MabI ACCWGGT 4 cut(s) 295, 424, 616, 934
MaeI CTAG 5 cut(s) 18, 234, 324, 590, 1776
MaeII ACGT 6 cut(s) 164, 311, 1042, 1336, 1594, 2134
MaeIII GTNAC 7 cut(s) 795, 1043, 1268, 2044, 2188, 2287, 2428
MbiI CCGCTC 1 cut(s) 2593
MboII GAAGA 8 cut(s) 913, 1166, 1717, 1797, 2444, 2481, 2498, 2610
MfeI CAATTG 1 cut(s) 1869
MflI RGATCY 3 cut(s) 149, 878, 907
MhlI GDGCHC 7 cut(s) 73, 613, 951, 1600, 1768, 2248, 2407
MlsI TGGCCA 6 cut(s) 36, 213, 742, 848, 2271, 2669
MluNI TGGCCA 6 cut(s) 36, 213, 742, 848, 2271, 2669
MlyI GAGTC 2 cut(s) 1288, 2162
MmeI TCCRAC 1 cut(s) 1861
Mox20I TGGCCA 6 cut(s) 36, 213, 742, 848, 2271, 2669
Mph1103I ATGCAT 1 cut(s) 2444
MroI TCCGGA 1 cut(s) 2509
MscI TGGCCA 6 cut(s) 36, 213, 742, 848, 2271, 2669
MseI TTAA 3 cut(s) 1856, 2195, 2549
MslI CAYNNNNRTG 5 cut(s) 736, 1149, 1448, 2261, 2315
Msp20I TGGCCA 6 cut(s) 36, 213, 742, 848, 2271, 2669
MspA1I CMGCKG 5 cut(s) 116, 686, 1427, 1811, 2000
MspI CCGG 4 cut(s) 452, 713, 1713, 2510
MunI CAATTG 1 cut(s) 1869
Mva1269I GAATGC 2 cut(s) 819, 1465
MvnI CGCG 1 cut(s) 97
NcoI CCATGG 2 cut(s) 843, 2116
NdeI CATATG 1 cut(s) 1265
NlaIV GGNNCC 9 cut(s) 72, 138, 151, 636, 672, 690, 708, 765, 1765
NmeAIII GCCGAG 1 cut(s) 904
NmuCI GTSAC 3 cut(s) 795, 2044, 2188
NsiI ATGCAT 1 cut(s) 2444
NspI RCATGY 3 cut(s) 409, 703, 2367
OliI CACNNNNGTG 1 cut(s) 2261
PaeI GCATGC 2 cut(s) 409, 703
PagI TCATGA 3 cut(s) 1233, 1300, 2370
PaqCI CACCTGC 2 cut(s) 748, 868
PceI AGGCCT 1 cut(s) 1357
PcsI WCGNNNNNNNCGW 2 cut(s) 1204, 2281
PctI GAATGC 2 cut(s) 819, 1465
PfeI GAWTC 2 cut(s) 913, 2685
PflFI GACNNNGTC 1 cut(s) 892
PflMI CCANNNNNTGG 5 cut(s) 284, 296, 374, 524, 1171
PinAI ACCGGT 1 cut(s) 451
PleI GAGTC 2 cut(s) 1288, 2162
PpsI GAGTC 2 cut(s) 1288, 2162
PpuMI RGGWCCY 5 cut(s) 359, 371, 557, 620, 1532
PshBI ATTAAT 1 cut(s) 2549
Psp1406I AACGTT 1 cut(s) 164
Psp5II RGGWCCY 5 cut(s) 359, 371, 557, 620, 1532
PspEI GGTNACC 1 cut(s) 2188
PspFI CCCAGC 1 cut(s) 65
PspN4I GGNNCC 9 cut(s) 72, 138, 151, 636, 672, 690, 708, 765, 1765
PspPPI RGGWCCY 5 cut(s) 359, 371, 557, 620, 1532
PstI CTGCAG 3 cut(s) 865, 1489, 1605
PstNI CAGNNNCTG 3 cut(s) 284, 374, 623
PsuI RGATCY 3 cut(s) 149, 878, 907
PsyI GACNNNGTC 1 cut(s) 892
PvuII CAGCTG 3 cut(s) 1427, 1811, 2000
RseI CAYNNNNRTG 5 cut(s) 736, 1149, 1448, 2261, 2315
SalI GTCGAC 1 cut(s) 1898
SaqAI TTAA 3 cut(s) 1856, 2195, 2549
SchI GAGTC 2 cut(s) 1288, 2162
SduI GDGCHC 7 cut(s) 73, 613, 951, 1600, 1768, 2248, 2407
SexAI ACCWGGT 4 cut(s) 295, 424, 616, 934
SfaNI GCATC 8 cut(s) 362, 1095, 1190, 1333, 1605, 2064, 2075, 2451
SfcI CTRYAG 3 cut(s) 861, 1485, 1601
SgrAI CRCCGGYG 1 cut(s) 451
SmiMI CAYNNNNRTG 5 cut(s) 736, 1149, 1448, 2261, 2315
SmlI CTYRAG 1 cut(s) 2055
SmoI CTYRAG 1 cut(s) 2055
SphI GCATGC 2 cut(s) 409, 703
SseBI AGGCCT 1 cut(s) 1357
SspMI CTAG 5 cut(s) 18, 234, 324, 590, 1776
StuI AGGCCT 1 cut(s) 1357
StyI CCWWGG 2 cut(s) 843, 2116
TaaI ACNGT 4 cut(s) 541, 1378, 2263, 2482
TaiI ACGT 6 cut(s) 167, 314, 1045, 1339, 1597, 2137
TaqI TCGA 8 cut(s) 142, 565, 899, 1198, 1899, 2284, 2677, 2683
TatI WGTACW 3 cut(s) 1055, 1431, 2558
TauI GCSGC 6 cut(s) 100, 137, 205, 689, 820, 2384
TfiI GAWTC 2 cut(s) 913, 2685
Tru1I TTAA 3 cut(s) 1856, 2195, 2549
Tru9I TTAA 3 cut(s) 1856, 2195, 2549
TscAI CASTG 9 cut(s) 546, 672, 1316, 1501, 1605, 1746, 2246, 2523, 2652
TseFI GTSAC 3 cut(s) 795, 2044, 2188
TseI GCWGC 9 cut(s) 116, 650, 1484, 1487, 1603, 1606, 1688, 2088, 2339
Tsp45I GTSAC 3 cut(s) 795, 2044, 2188
TspGWI ACGGA 2 cut(s) 2159, 2290
TspRI CASTG 9 cut(s) 546, 672, 1316, 1501, 1605, 1746, 2246, 2523, 2652
Tth111I GACNNNGTC 1 cut(s) 892
Van91I CCANNNNNTGG 5 cut(s) 284, 296, 374, 524, 1171
VneI GTGCAC 1 cut(s) 1596
VspI ATTAAT 1 cut(s) 2549
XagI CCTNNNNNAGG 3 cut(s) 144, 366, 933
XapI RAATTY 7 cut(s) 918, 1259, 1382, 1883, 2280, 2391, 2468
XbaI TCTAGA 2 cut(s) 17, 233
XceI RCATGY 3 cut(s) 409, 703, 2367
XcmI CCANNNNNNNNNTGG 1 cut(s) 1316
XmiI GTMKAC 2 cut(s) 1333, 1899
XspI CTAG 5 cut(s) 18, 234, 324, 590, 1776
Zsp2I ATGCAT 1 cut(s) 2444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.