Rorug03G0348600

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000554
Physical Location & Seq
Reverse (-)
42508484 .. 42509251
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0348600.1

Sequence Viewer

Length: 768 bp
ATGGAACCACGAACTCTGCAACTGATGGAGCTACAAACCCAACAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACGGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAAGGATCTTTACTACGACAAGGGAATTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGTCTCCAGCTGAACCAGTATAGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCGTGGGAACTAGTTCTACTGGTACTGGTGGATCCATTGATATTAACTTTGGGTCCACTAGTCCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGCCACGGGTCGACTGCAGTGTTGACCAGTATTCCTCCTCACCCTTCAACACTAATACTAGTACTTCCTTCTTTGGCACAACAGGAGGACAAACTTTCATGGAACAGCGAGGAGAAGATCACCAGGAGATTGAAACTCTTCCTCTGTTCCCCATGCACGGTGAGGACGTCCTTGGTGGCCTGATGACTACTTCCGAGGGAGGTAGCAGCTATGGCTACTATTCCGGTGGCTCAAGAAGTTACAACGGTGGCTCTCACGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGGTGACTTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

255

Amino Acids

27.7

Weight (kDa)

5.09

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 38 - 99 3.9e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000554)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT4G32640 AT4G32640
fragaria_vesca FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000
malus_domestica MD02G1169200.v1.1 MD13G1230500.v1.1 MD15G1281700.v1.1 MD16G1009900.v1.1 MD16G1235300.v1.1
prunus_persica Prupe.1G056500_v2.0.a1 Prupe.1G056500_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1
pyrus_communis pycom02g13590 pycom13g20290 pycom15g24480 pycom16g00970 pycom16g19630
rosa_chinensis RchiOBHm_Chr4g0396591 RchiOBHm_Chr4g0445631
rosa_laevigata RLG00000005723 RLG00000009518
rosa_multiflora Rmu_co8031254.1_g000001 Rmu_co8351119.1_g000001 Rmu_sc0003637.1_g000024 Rmu_sc0010969.1_g000001 Rmu_sc0019383.1_g000002
rosa_roxburghii Rroxscaffold_5G00341440 Rroxscaffold_5G00386110
rosa_rugosa Rorug03G0348600 Rorug03G0348700 Rorug04G0363200 Rorug04G0363300 Rorug04G0363400 Rorug04G0363500
rosa_samantha Rh4AG070600 Rh4AG424700 Rh4AG425100 Rh4BG068500 Rh4BG436900 Rh4CG076300 Rh4CG451400 Rh4DG065600 Rh4DG433400
rosa_wichuraiana Rw4G005630 Rw4G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 630
AccB7I CCANNNNNTGG 1 cut(s) 437
AccI GTMKAC 1 cut(s) 471
AccIII TCCGGA 1 cut(s) 746
AclWI GGATC 9 cut(s) 142, 155, 165, 354, 367, 402, 415, 435, 448
AcyI GRCGYC 1 cut(s) 627
AfaI GTAC 2 cut(s) 352, 523
AfiI CCNNNNNNNGG 2 cut(s) 437, 617
AflIII ACRYGT 1 cut(s) 238
AgsI TTSAA 2 cut(s) 508, 593
AhlI ACTAGT 3 cut(s) 338, 386, 518
AjnI CCWGG 2 cut(s) 116, 582
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 6 cut(s) 31, 223, 434, 669, 730, 752
AluI AGCT 6 cut(s) 31, 223, 434, 669, 730, 752
Alw21I GWGCWC 2 cut(s) 201, 732
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 9 cut(s) 142, 155, 165, 354, 367, 402, 415, 435, 448
Ama87I CYCGRG 1 cut(s) 285
Aor13HI TCCGGA 1 cut(s) 746
AoxI GGCC 3 cut(s) 428, 461, 637
ApeKI GCWGC 3 cut(s) 74, 317, 666
ArsI GACNNNNNNTTYG 4 cut(s) 407, 439, 440, 472
Asp700I GAANNNNTTC 2 cut(s) 340, 597
AspS9I GGNCC 3 cut(s) 381, 428, 461
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 4 cut(s) 492, 572, 632, 767
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 1 cut(s) 381
BaeGI GKGCMC 2 cut(s) 188, 330
BamHI GGATCC 4 cut(s) 147, 359, 407, 440
BanII GRGCYC 2 cut(s) 286, 732
BauI CACGAG 1 cut(s) 206
Bbv12I GWGCWC 2 cut(s) 201, 732
BbvI GCAGC 3 cut(s) 86, 304, 678
BccI CCATC 4 cut(s) 19, 50, 419, 751
BceAI ACGGC 1 cut(s) 96
BciT130I CCWGG 2 cut(s) 118, 584
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 221
BcuI ACTAGT 3 cut(s) 338, 386, 518
BfaI CTAG 3 cut(s) 339, 387, 519
BfmI CTRYAG 2 cut(s) 192, 475
BglII AGATCT 1 cut(s) 210
BisI GCNGC 3 cut(s) 75, 318, 667
BlpI GCTNAGC 1 cut(s) 731
BlsI GCNGC 3 cut(s) 76, 319, 668
BmcAI AGTACT 1 cut(s) 523
Bme1390I CCNGG 3 cut(s) 79, 118, 584
Bme18I GGWCC 1 cut(s) 381
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 3 cut(s) 381, 428, 461
BmiI GGNNCC 8 cut(s) 6, 126, 149, 269, 361, 382, 409, 442
BmrFI CCNGG 3 cut(s) 79, 118, 584
BpmI CTGGAG 2 cut(s) 117, 203
Bpu1102I GCTNAGC 1 cut(s) 731
BpuEI CTTGAG 4 cut(s) 137, 306, 676, 746
BpuMI CCSGG 1 cut(s) 79
BsaHI GRCGYC 1 cut(s) 627
BsaJI CCNNGG 4 cut(s) 330, 464, 631, 654
BsaWI WCCGGW 2 cut(s) 683, 746
Bsc4I CCNNNNNNNGG 2 cut(s) 437, 617
Bse1I ACTGG 5 cut(s) 229, 352, 358, 400, 487
BseAI TCCGGA 1 cut(s) 746
BseBI CCWGG 2 cut(s) 118, 584
BseDI CCNNGG 4 cut(s) 330, 464, 631, 654
BseGI GGATG 2 cut(s) 61, 743
BseLI CCNNNNNNNGG 2 cut(s) 437, 617
BseMII CTCAG 1 cut(s) 745
BseNI ACTGG 5 cut(s) 229, 352, 358, 400, 487
BseRI GAGGAG 2 cut(s) 487, 585
BseSI GKGCMC 2 cut(s) 188, 330
BseXI GCAGC 3 cut(s) 86, 304, 678
BshFI GGCC 3 cut(s) 430, 463, 639
BsiHKAI GWGCWC 2 cut(s) 201, 732
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 3 cut(s) 78, 684, 747
BslI CCNNNNNNNGG 2 cut(s) 437, 617
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 3 cut(s) 430, 463, 639
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 5 cut(s) 188, 201, 286, 330, 732
Bsp13I TCCGGA 1 cut(s) 746
Bsp143I GATC 8 cut(s) 136, 147, 157, 210, 359, 407, 440, 577
Bsp1720I GCTNAGC 1 cut(s) 731
BspANI GGCC 3 cut(s) 430, 463, 639
BspCNI CTCAG 1 cut(s) 744
BspEI TCCGGA 1 cut(s) 746
BspLI GGNNCC 8 cut(s) 6, 126, 149, 269, 361, 382, 409, 442
BspMAI CTGCAG 1 cut(s) 479
BspPI GGATC 9 cut(s) 142, 155, 165, 354, 367, 402, 415, 435, 448
BsrI ACTGG 5 cut(s) 229, 352, 358, 400, 487
BssECI CCNNGG 4 cut(s) 330, 464, 631, 654
BssMI GATC 8 cut(s) 136, 147, 157, 210, 359, 407, 440, 577
BssNI GRCGYC 1 cut(s) 627
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 631
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 2 cut(s) 118, 584
Bst4CI ACNGT 2 cut(s) 620, 707
Bst6I CTCTTC 2 cut(s) 296, 603
BstACI GRCGYC 1 cut(s) 627
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 2 cut(s) 731, 765
BstDSI CCRYGG 2 cut(s) 330, 464
BstF5I GGATG 2 cut(s) 61, 743
BstKTI GATC 8 cut(s) 139, 150, 160, 213, 362, 410, 443, 580
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 8 cut(s) 136, 147, 157, 210, 359, 407, 440, 577
BstMWI GCNNNNNNNGC 1 cut(s) 672
BstNI CCWGG 2 cut(s) 118, 584
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 3 cut(s) 77, 116, 582
BstSFI CTRYAG 2 cut(s) 192, 475
BstSLI GKGCMC 2 cut(s) 188, 330
BstV1I GCAGC 3 cut(s) 86, 304, 678
BstX2I RGATCY 6 cut(s) 147, 157, 210, 359, 407, 440
BstYI RGATCY 6 cut(s) 147, 157, 210, 359, 407, 440
BsuRI GGCC 3 cut(s) 430, 463, 639
BtgI CCRYGG 2 cut(s) 330, 464
BtsCI GGATG 2 cut(s) 61, 743
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 1 cut(s) 484
Cac8I GCNNGC 1 cut(s) 432
Cfr13I GGNCC 3 cut(s) 381, 428, 461
Csp6I GTAC 2 cut(s) 351, 522
CviAII CATG 3 cut(s) 239, 559, 613
CviQI GTAC 2 cut(s) 351, 522
DdeI CTNAG 2 cut(s) 731, 765
DpnI GATC 8 cut(s) 138, 149, 159, 212, 361, 409, 442, 579
DpnII GATC 8 cut(s) 136, 147, 157, 210, 359, 407, 440, 577
Eam1104I CTCTTC 2 cut(s) 296, 603
EarI CTCTTC 2 cut(s) 296, 603
Ecl136II GAGCTC 1 cut(s) 730
Eco130I CCWWGG 1 cut(s) 631
Eco24I GRGCYC 2 cut(s) 286, 732
Eco47I GGWCC 1 cut(s) 381
Eco53kI GAGCTC 1 cut(s) 730
Eco88I CYCGRG 1 cut(s) 285
EcoICRI GAGCTC 1 cut(s) 730
EcoRII CCWGG 2 cut(s) 116, 582
EcoT14I CCWWGG 1 cut(s) 631
EcoT38I GRGCYC 2 cut(s) 286, 732
ErhI CCWWGG 1 cut(s) 631
FaeI CATG 3 cut(s) 242, 562, 616
FaiI YATR 5 cut(s) 234, 240, 560, 614, 672
FatI CATG 3 cut(s) 238, 558, 612
FblI GTMKAC 1 cut(s) 471
Fnu4HI GCNGC 3 cut(s) 75, 318, 667
FokI GGATG 2 cut(s) 68, 730
FriOI GRGCYC 2 cut(s) 286, 732
Fsp4HI GCNGC 3 cut(s) 75, 318, 667
FspBI CTAG 3 cut(s) 339, 387, 519
GluI GCNGC 3 cut(s) 75, 318, 667
GsuI CTGGAG 2 cut(s) 117, 203
HaeIII GGCC 3 cut(s) 430, 463, 639
HapII CCGG 3 cut(s) 78, 684, 747
Hin1I GRCGYC 1 cut(s) 627
Hin1II CATG 3 cut(s) 242, 562, 616
HincII GTYRAC 2 cut(s) 472, 484
HindII GTYRAC 2 cut(s) 472, 484
HpaII CCGG 3 cut(s) 78, 684, 747
HphI GGTGA 4 cut(s) 492, 572, 632, 767
Hpy166II GTNNAC 3 cut(s) 384, 472, 484
Hpy188I TCNGA 1 cut(s) 655
Hpy188III TCNNGA 7 cut(s) 134, 206, 271, 287, 693, 725, 747
Hpy8I GTNNAC 3 cut(s) 384, 472, 484
HpyAV CCTTC 2 cut(s) 514, 538
HpyCH4III ACNGT 2 cut(s) 620, 707
HpyCH4IV ACGT 2 cut(s) 627, 717
HpyCH4V TGCA 4 cut(s) 19, 309, 477, 616
HpyF10VI GCNNNNNNNGC 1 cut(s) 672
HpyF3I CTNAG 2 cut(s) 731, 765
HpySE526I ACGT 2 cut(s) 627, 717
Hsp92I GRCGYC 1 cut(s) 627
Hsp92II CATG 3 cut(s) 242, 562, 616
Kpn2I TCCGGA 1 cut(s) 746
Kzo9I GATC 8 cut(s) 136, 147, 157, 210, 359, 407, 440, 577
LmnI GCTCC 2 cut(s) 28, 749
Lsp1109I GCAGC 3 cut(s) 86, 304, 678
MaeI CTAG 3 cut(s) 339, 387, 519
MaeII ACGT 2 cut(s) 627, 717
MaeIII GTNAC 2 cut(s) 698, 755
MalI GATC 8 cut(s) 138, 149, 159, 212, 361, 409, 442, 579
MboI GATC 8 cut(s) 136, 147, 157, 210, 359, 407, 440, 577
MboII GAAGA 3 cut(s) 313, 587, 590
MflI RGATCY 6 cut(s) 147, 157, 210, 359, 407, 440
MhlI GDGCHC 5 cut(s) 188, 201, 286, 330, 732
MluCI AATT 3 cut(s) 177, 421, 454
MroI TCCGGA 1 cut(s) 746
MroXI GAANNNNTTC 2 cut(s) 340, 597
MseI TTAA 2 cut(s) 180, 372
MspA1I CMGCKG 2 cut(s) 223, 434
MspI CCGG 3 cut(s) 78, 684, 747
MspR9I CCNGG 3 cut(s) 79, 118, 584
MvaI CCWGG 2 cut(s) 118, 584
MwoI GCNNNNNNNGC 1 cut(s) 672
NciI CCSGG 1 cut(s) 79
NdeII GATC 8 cut(s) 136, 147, 157, 210, 359, 407, 440, 577
NlaIII CATG 3 cut(s) 242, 562, 616
NlaIV GGNNCC 8 cut(s) 6, 126, 149, 269, 361, 382, 409, 442
NmuCI GTSAC 1 cut(s) 755
NspI RCATGY 1 cut(s) 242
PaeR7I CTCGAG 1 cut(s) 285
PciI ACATGT 1 cut(s) 238
PcsI WCGNNNNNNNCGW 1 cut(s) 624
PdmI GAANNNNTTC 2 cut(s) 340, 597
PflMI CCANNNNNTGG 1 cut(s) 437
PkrI GCNGC 3 cut(s) 76, 319, 668
PscI ACATGT 1 cut(s) 238
Psp124BI GAGCTC 1 cut(s) 732
Psp6I CCWGG 2 cut(s) 116, 582
PspGI CCWGG 2 cut(s) 116, 582
PspN4I GGNNCC 8 cut(s) 6, 126, 149, 269, 361, 382, 409, 442
PspPI GGNCC 3 cut(s) 381, 428, 461
PsrI GAACNNNNNNTAC 2 cut(s) 328, 360
PstI CTGCAG 1 cut(s) 479
PsuI RGATCY 6 cut(s) 147, 157, 210, 359, 407, 440
PvuII CAGCTG 2 cut(s) 223, 434
RsaI GTAC 2 cut(s) 352, 523
RsaNI GTAC 2 cut(s) 351, 522
SacI GAGCTC 1 cut(s) 732
SalI GTCGAC 1 cut(s) 470
SaqAI TTAA 2 cut(s) 180, 372
SatI GCNGC 3 cut(s) 75, 318, 667
Sau3AI GATC 8 cut(s) 136, 147, 157, 210, 359, 407, 440, 577
Sau96I GGNCC 3 cut(s) 381, 428, 461
ScaI AGTACT 1 cut(s) 523
ScrFI CCNGG 3 cut(s) 79, 118, 584
SduI GDGCHC 5 cut(s) 188, 201, 286, 330, 732
SfcI CTRYAG 2 cut(s) 192, 475
Sfr274I CTCGAG 1 cut(s) 285
SinI GGWCC 1 cut(s) 381
SlaI CTCGAG 1 cut(s) 285
SmlI CTYRAG 5 cut(s) 152, 285, 321, 691, 725
SmoI CTYRAG 5 cut(s) 152, 285, 321, 691, 725
SpeI ACTAGT 3 cut(s) 338, 386, 518
Sse9I AATT 3 cut(s) 177, 421, 454
SspMI CTAG 3 cut(s) 339, 387, 519
SstI GAGCTC 1 cut(s) 732
StyD4I CCNGG 3 cut(s) 77, 116, 582
StyI CCWWGG 1 cut(s) 631
TaaI ACNGT 2 cut(s) 620, 707
TaiI ACGT 2 cut(s) 630, 720
TaqI TCGA 4 cut(s) 51, 286, 414, 471
TasI AATT 3 cut(s) 177, 421, 454
TatI WGTACW 1 cut(s) 521
Tru1I TTAA 2 cut(s) 180, 372
Tru9I TTAA 2 cut(s) 180, 372
TscAI CASTG 1 cut(s) 484
TseFI GTSAC 1 cut(s) 755
TseI GCWGC 3 cut(s) 74, 317, 666
Tsp45I GTSAC 1 cut(s) 755
TspDTI ATGAA 2 cut(s) 314, 547
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 1 cut(s) 484
Van91I CCANNNNNTGG 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 381
XceI RCATGY 1 cut(s) 242
XhoI CTCGAG 1 cut(s) 285
XmiI GTMKAC 1 cut(s) 471
XmnI GAANNNNTTC 2 cut(s) 340, 597
XspI CTAG 3 cut(s) 339, 387, 519
ZraI GACGTC 1 cut(s) 628
ZrmI AGTACT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.