RLG00000009518

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000554
Physical Location & Seq
Forward (+)
53846525 .. 53859865
13341 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009518

Sequence Viewer

Length: 3390 bp
ATGGCAGCTTTTGTGCCTCCTCCAGGGGCACCTAGGCCCAATAACAGTAACACTCCACCAGGGGCACCACCCCCAAATTACAACCCTAACAATGCTCAGAGAAACCCCGATTCGTTATCCGGTAACATGCAGAATTTGAATCTTAATCGCCAGCAGCCTCCCCCCATGCCCAATTCTGCTCCTAGACCATCATCATCATCCCCTTTTGGCCAACCGCCGCCCTTCCAATCATCACCACCTCCCCCGGGGGCACCTGGTGCTTCTGCGCCTTATTCTCGGCCTGGCCCTCCCCCGGCGAGACCTGCAGCACCCCGTCCACAAGCAACATTACCCCCTGGCACCGCCGCAGTAAGACCTACTGGCCCACCTGTTGGCCAGTCGTCACCTTTTGGGTCTAGACCACCTCCTGGGGCTTTTCCTCCTGGGGTGGCTCCTACTTCTGCGCCAGCTTCCAGTCCTTTCCAGACAACGGGTTTGCCAAGTGGTCCAGGTTCAATGCCACCACCGCCTTCATCAGGTCCTCGCCCTGGTACTGGGCCGTTCGCTAGTGGTCAGGCTGTGCCCCCTATGGGCGCACCGGGTAGAATGAGTAATGGGCCACCAGTCTTTGGTTCTGGGGCTGTGCCAGGTGGACCTCGTTTTCCTCCGACTGGAAATTTACCTCAACCACCTGTTGGACCTTCACCAACTTCAGTGGCTCCTCCTCGTGCTCCAACCATGCATTCGGTGCTCGGTGGTCCAGCAGTAGGTGCTCCACCGGGATCTACTGCCCAACAAGCACCGCCATTTTCGTCAGGTCCTCAAGGCATGCGGCCTCCTCCTCCTGGTTCTCCTTATAGCCCACGGTCATGGCCAATGCAACAAGGGCAGGTGGCTCAACCTCCACAATTTCCTGGGTCTGCTCCACCCCCACAATTTCCTGGGTCTGCTCCACCCCCACAATTTCCTGGCTCTGCTCCACCTCCACAATTTCCTGGCTCTGCTCAACCACCTAGAATGTATGGAATGCCACCACAACCACTGCCAAATCAGTCCATGACTACCATCTCATCGGCTGTTGGTCAAACTGGAACTCCTATGGCTGGGTCATCAAAGATTGATCCCAATCAAATTCCTCGGCCTGGACCAAGTTCTTCAGTACTTCTGCATGAAACTCGTCAGGCCAATCAAGCAAATCCACCTCCGCCTGCTACAAGTGATTACATCGTCAGAGACACTGGGAATTGCAGTCCACGTTACATGAGGTGCACCATCAATCAGATACCATGCACTGCTGATCTTTTGACAACATCAGGGATGCCGTTAGCTTTGTTGGTTGAACCTTTTGCCCTTCCTCATCCGTCTGAGGAACCAATCCAAGTTGTAGATTTTGGTGAAAGTGGCCCTGTTCGATGTTCTCGTTGCAAAGGCTACATAAATCCTTTCATGAGGTTCATAGACCAGGGCAGGCAATTCATCTGCAATTTGTGTGGATTTACTGATGAGACTCCCCGCGACTACCACTGCAATCTAGGTCCAGATGGCAGACGTAGAGATGCTGATGATCGGCCTGAGCTATGTAGGGGAACAGTTGAATTTGTTGCCTCAAAAGAATACATGGTGCGTGATCCCATGCCAGCTGTGTACTTCTTCCTTATCGATGTATCCATGAATGCCATTCAAACTGGTGCAACTGCTGCAGCTTGCAGTGCAATCAGTCAAGTTATTGCTGATCTTCCTGAAGGTCCTCGGACAAGGGTGGGGATAGCAACATTTGACTCGACAATCCATTTTTACAATTTGAAACGTGCACTGCAGCAGCCTTTGATGCTTATTGTTCCTGATGTACAAGATGTTTACACTCCTCTAGAGACTGATGTAGTTGTTCAGCTTTCCGAGTGCCGTCAACATTTGGAGCAATTGCTGGAAAGTATTCCAACTATGTTTCAGAATAGTAAAACTGCTGAATCAGCTTTTGGTGCAGCAATCAAGGCAGCTTTCTTGGCAATAAAGAGTACTGGAGGGAAACTTTTGGTGTTTCAGTCAGTGTTGCCATCAACTGGAATTGGAGCGCTTTCAGCTAGAGAGGCTGAAGGAAGAGCTAATATATCTTCAGCTGACAAGGAGCCCAATAAATTACTCCAGCCCGTGGACAAAACATTAAAGACATTGGCAATTGAATTTGCTGAATATCAGGTTTGCGTCGATTTATTTATCACTACCCAGTCATACATAGATATTGCTTCTATCTCAGTCATCCCCAGAACAACCGGAGGGCAGGTTTACTATTATTATCCCTTCTCAGCTCTCTCTGATCCTGCAAAGCTATATAATGATCTTAGATGGAATGTCACAAGGCCGCAAGGTTTTGAGGCAGTGATGCGTGTAAGATGCAGCCAGGGTATTCAAGTTCAAGAGTACTTTGGAAACTTCTGCAAACGCATTCCAACAGATGTCGACCTACCTGGGATTGACTGTGACAAAACTATTATGGTAACGTTAAAGCATGATGACAAATTACAGGATGGCTCAGAATGTTCTTTCCAGTGTGCTGTTTTATACACGACTGTGTATGGCCAACGGAGAATTCGGGTTACCACTTTGTCTCTGCCATGCACTAGTATGCTAAGTAATCTGTTTCGTGCTGCTGATTTGGACACTCAGTTTTCATGTTACATGAAGCAAGCGGCAAATGAAATCACGTCAAGTCCCCTCTTGCGTGTACGGGAACAAATGACAAATCTTTGCATCAATAGTCTGCTTTCATACCGCAAATTCTGTGCTACTGTATCATCTTCGGGACAGCTTATTCTTCCAGAGGCACTGAAGCTCCTGCCTCTATACACCCTTGCATTAATCAAAAGTACCGGACTACGAACTGATGGAAAAATTGATGAGCGGTCTTTCTGGATCAACCATGTTTCCTCCCTCTCTGTACCTTTGGCAGTTCCACTTGTGTATCCCAGGATGGTGGCTGTCCATGACCTTGATGCTAAAAAGGAGGGTGATGGATCTCTTATTCCTCCGGTGATTCCACTTTCTAGCGAACACGTTCGTGATGATGGAATATATCTTCTTGAGAATGGTGAGGACTGTTTCATATACGTTGGGAACTCGGTGGATTCTGGAATTTTACAACAGCTGTTTGGTGTCACCACTGCTGATGAACTTCCTACTCAGTTTGTGCTGCAGCAGTATGATAATTCATTATCAAAGAAGCTGAATGATGTGGTAAATGAAATACGCCGCCAGAGATGTTCCTACCTGCGATTGAAATTGTGCAAGAAAGGAGATCCTTCAGGAACATTCTTCTTATCACATTTGGTTGAAGACCAGAGTCCCCATGGCCCCTCCTATGTTGAGTTTCTGGTACATGTCCATCGTCAAATACAGATAAAAATGACTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

1130

Amino Acids

121.06

Weight (kDa)

8.29

Isoelectric Point (pI)

55.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Sec23_Sec24 PF04810 462 - 500 3.4e-16 Sec23/Sec24 zinc finger
Sec23_trunk PF04811 537 - 777 2.7e-80 Sec23/Sec24 trunk domain
Sec23_BS PF08033 782 - 866 1.5e-27 Sec23/Sec24 beta-sandwich domain
Sec23_helical PF04815 877 - 975 6.7e-25 Sec23/Sec24 helical domain
Gelsolin PF00626 1001 - 1067 1.9e-09 Gelsolin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000554)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT4G32640 AT4G32640
fragaria_vesca FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000
malus_domestica MD02G1169200.v1.1 MD13G1230500.v1.1 MD15G1281700.v1.1 MD16G1009900.v1.1 MD16G1235300.v1.1
prunus_persica Prupe.1G056500_v2.0.a1 Prupe.1G056500_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1
pyrus_communis pycom02g13590 pycom13g20290 pycom15g24480 pycom16g00970 pycom16g19630
rosa_chinensis RchiOBHm_Chr4g0396591 RchiOBHm_Chr4g0445631
rosa_laevigata RLG00000005723 RLG00000009518
rosa_multiflora Rmu_co8031254.1_g000001 Rmu_co8351119.1_g000001 Rmu_sc0003637.1_g000024 Rmu_sc0010969.1_g000001 Rmu_sc0019383.1_g000002
rosa_roxburghii Rroxscaffold_5G00341440 Rroxscaffold_5G00386110
rosa_rugosa Rorug03G0348600 Rorug03G0348700 Rorug04G0363200 Rorug04G0363300 Rorug04G0363400 Rorug04G0363500
rosa_samantha Rh4AG070600 Rh4AG424700 Rh4AG425100 Rh4BG068500 Rh4BG436900 Rh4CG076300 Rh4CG451400 Rh4DG065600 Rh4DG433400
rosa_wichuraiana Rw4G005630 Rw4G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 859
Acc36I ACCTGC 4 cut(s) 310, 859, 2248, 3252
AccB1I GGYRCC 4 cut(s) 28, 64, 250, 338
AccB7I CCANNNNNTGG 6 cut(s) 371, 407, 608, 674, 2039, 2128
AccBSI CCGCTC 1 cut(s) 2878
AccI GTMKAC 1 cut(s) 2436
AccII CGCG 1 cut(s) 1494
AclI AACGTT 1 cut(s) 2477
AclWI GGATC 7 cut(s) 769, 1094, 1601, 2288, 2897, 2998, 3266
AcoI YGGCCR 4 cut(s) 208, 373, 851, 2554
AcsI RAATTY 8 cut(s) 133, 655, 1110, 1574, 2159, 2565, 2753, 3108
AcuI CTGAAG 7 cut(s) 675, 1119, 1740, 2076, 2091, 2825, 3261
AdeI CACNNNGTG 1 cut(s) 257
AfeI AGCGCT 1 cut(s) 2052
AflIII ACRYGT 2 cut(s) 3028, 3352
AhlI ACTAGT 1 cut(s) 2597
AjiI CACGTC 1 cut(s) 2682
AjuI GAANNNNNNNTTGG 6 cut(s) 706, 738, 1938, 1970, 2550, 2582
AleI CACNNNNGTG 2 cut(s) 2546, 3033
Alw21I GWGCWC 5 cut(s) 712, 732, 754, 1250, 1792
Alw26I GTCTC 5 cut(s) 292, 1206, 1478, 1844, 2589
Alw44I GTGCAC 2 cut(s) 1246, 1788
AlwI GGATC 7 cut(s) 769, 1094, 1601, 2288, 2897, 2998, 3266
Ama87I CYCGRG 1 cut(s) 244
Aor51HI AGCGCT 1 cut(s) 2052
ApaLI GTGCAC 2 cut(s) 1246, 1788
ApoI RAATTY 8 cut(s) 133, 655, 1110, 1574, 2159, 2565, 2753, 3108
ArsI GACNNNNNNTTYG 2 cut(s) 457, 489
AseI ATTAAT 1 cut(s) 2834
Asp700I GAANNNNTTC 2 cut(s) 1911, 3030
AspA2I CCTAGG 1 cut(s) 32
AspLEI GCGC 4 cut(s) 268, 445, 575, 2053
AsuC2I CCSGG 5 cut(s) 245, 246, 293, 579, 759
AsuHPI GGTGA 8 cut(s) 225, 375, 675, 1385, 2996, 3019, 3077, 3124
AvaI CYCGRG 1 cut(s) 244
AvaII GGWCC 9 cut(s) 485, 518, 632, 677, 737, 797, 1124, 1514, 1724
AvrII CCTAGG 1 cut(s) 32
BaeGI GKGCMC 6 cut(s) 31, 67, 253, 564, 1250, 1792
BaeI ACNNNNGTAYC 2 cut(s) 2921, 2954
BalI TGGCCA 4 cut(s) 210, 375, 853, 2556
BanI GGYRCC 4 cut(s) 28, 64, 250, 338
BanII GRGCYC 1 cut(s) 2109
BauI CACGAG 1 cut(s) 705
BbsI GAAGAC 1 cut(s) 3315
Bbv12I GWGCWC 5 cut(s) 712, 732, 754, 1250, 1792
BceAI ACGGC 3 cut(s) 523, 1285, 1866
BcgI CGANNNNNNTGC 2 cut(s) 1136, 1170
BciVI GTATCC 2 cut(s) 1654, 2949
BcnI CCSGG 5 cut(s) 245, 246, 293, 579, 759
BcoDI GTCTC 5 cut(s) 292, 1206, 1478, 1844, 2589
BcuI ACTAGT 1 cut(s) 2597
BfmI CTRYAG 4 cut(s) 303, 1677, 1793, 3167
BfoI RGCGCY 1 cut(s) 2054
BfuAI ACCTGC 4 cut(s) 310, 859, 2248, 3252
BfuI GTATCC 2 cut(s) 1654, 2949
BlnI CCTAGG 1 cut(s) 32
BmcAI AGTACT 3 cut(s) 1140, 1996, 2399
Bme18I GGWCC 9 cut(s) 485, 518, 632, 677, 737, 797, 1124, 1514, 1724
BmeT110I CYCGRG 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 2682
BmiI GGNNCC 9 cut(s) 30, 66, 252, 340, 432, 699, 1350, 2106, 3328
BmrI ACTGGG 3 cut(s) 543, 1227, 2197
BmsI GCATC 7 cut(s) 1287, 1525, 1797, 2349, 2360, 2736, 2959
BmuI ACTGGG 3 cut(s) 543, 1227, 2197
BoxI GACNNNNGTC 1 cut(s) 3315
BpiI GAAGAC 1 cut(s) 3315
BpmI CTGGAG 3 cut(s) 6, 2019, 2105
Bpu10I CCTNAGC 1 cut(s) 1551
BpuEI CTTGAG 2 cut(s) 786, 3077
BpuMI CCSGG 5 cut(s) 245, 246, 293, 579, 759
Bsa29I ATCGAT 1 cut(s) 1638
BsaBI GATNNNNATC 1 cut(s) 1104
BsaI GGTCTC 1 cut(s) 292
BsaWI WCCGGW 4 cut(s) 119, 2249, 2846, 3004
BsaXI ACNNNNNCTCC 6 cut(s) 1057, 1087, 2244, 2274, 2793, 2823
Bse8I GATNNNNATC 1 cut(s) 1104
BseCI ATCGAT 1 cut(s) 1638
BseGI GGATG 6 cut(s) 197, 1302, 1336, 2235, 2509, 2952
BseJI GATNNNNATC 1 cut(s) 1104
BseMII CTCAG 8 cut(s) 110, 1335, 1542, 2244, 2295, 2523, 2654, 3170
BseRI GAGGAG 6 cut(s) 9, 690, 693, 807, 810, 1833
BseSI GKGCMC 6 cut(s) 31, 67, 253, 564, 1250, 1792
BseYI CCCAGC 1 cut(s) 1082
BsgI GTGCAG 1 cut(s) 1980
Bsh1236I CGCG 1 cut(s) 1494
BshNI GGYRCC 4 cut(s) 28, 64, 250, 338
BshVI ATCGAT 1 cut(s) 1638
BsiHKAI GWGCWC 5 cut(s) 712, 732, 754, 1250, 1792
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 8 cut(s) 120, 245, 293, 578, 758, 2250, 2847, 3005
BslFI GGGAC 3 cut(s) 2673, 2793, 3303
BsmAI GTCTC 5 cut(s) 292, 1206, 1478, 1844, 2589
BsmFI GGGAC 3 cut(s) 2673, 2793, 3303
BsmI GAATGC 4 cut(s) 721, 1011, 1657, 2421
Bso31I GGTCTC 1 cut(s) 292
BsoBI CYCGRG 1 cut(s) 244
Bsp1407I TGTACA 1 cut(s) 1825
Bsp19I CCATGG 1 cut(s) 3322
BspCNI CTCAG 8 cut(s) 109, 1336, 1543, 2243, 2294, 2522, 2653, 3169
BspDI ATCGAT 1 cut(s) 1638
BspFNI CGCG 1 cut(s) 1494
BspHI TCATGA 1 cut(s) 1425
BspLI GGNNCC 9 cut(s) 30, 66, 252, 340, 432, 699, 1350, 2106, 3328
BspMAI CTGCAG 4 cut(s) 307, 1681, 1797, 3171
BspMI ACCTGC 4 cut(s) 310, 859, 2248, 3252
BspPI GGATC 7 cut(s) 769, 1094, 1601, 2288, 2897, 2998, 3266
BspQI GCTCTTC 1 cut(s) 2071
BspT107I GGYRCC 4 cut(s) 28, 64, 250, 338
BspTNI GGTCTC 1 cut(s) 292
BsrBI CCGCTC 1 cut(s) 2878
BsrGI TGTACA 1 cut(s) 1825
BssSI CACGAG 1 cut(s) 705
BssT1I CCWWGG 2 cut(s) 32, 3322
Bst2BI CACGAG 1 cut(s) 705
Bst4CI ACNGT 7 cut(s) 47, 846, 1570, 2456, 2548, 2767, 3074
Bst6I CTCTTC 1 cut(s) 2071
BstAPI GCANNNNNTGC 4 cut(s) 257, 727, 749, 1676
BstAUI TGTACA 1 cut(s) 1825
BstC8I GCNNGC 8 cut(s) 152, 447, 809, 1188, 1448, 1617, 1684, 2664
BstDSI CCRYGG 3 cut(s) 842, 2127, 3322
BstEII GGTNACC 1 cut(s) 2572
BstENI CCTNNNNNAGG 2 cut(s) 21, 513
BstF5I GGATG 6 cut(s) 197, 1302, 1336, 2235, 2509, 2952
BstFNI CGCG 1 cut(s) 1494
BstH2I RGCGCY 1 cut(s) 2054
BstHHI GCGC 4 cut(s) 268, 445, 575, 2053
BstMAI GTCTC 5 cut(s) 292, 1206, 1478, 1844, 2589
BstNSI RCATGY 3 cut(s) 130, 811, 3356
BstPAI GACNNNNGTC 1 cut(s) 3315
BstPI GGTNACC 1 cut(s) 2572
BstSFI CTRYAG 4 cut(s) 303, 1677, 1793, 3167
BstSLI GKGCMC 6 cut(s) 31, 67, 253, 564, 1250, 1792
BstUI CGCG 1 cut(s) 1494
BstV2I GAAGAC 1 cut(s) 3315
BstX2I RGATCY 3 cut(s) 761, 2990, 3271
BstXI CCANNNNNNTGG 2 cut(s) 849, 2950
BstYI RGATCY 3 cut(s) 761, 2990, 3271
Bsu15I ATCGAT 1 cut(s) 1638
BsuI GTATCC 2 cut(s) 1654, 2949
BsuTUI ATCGAT 1 cut(s) 1638
BtgI CCRYGG 3 cut(s) 842, 2127, 3322
BtrI CACGTC 1 cut(s) 2682
BtsCI GGATG 6 cut(s) 197, 1302, 1336, 2235, 2509, 2952
BtsI GCAGTG 7 cut(s) 1019, 1269, 1501, 1693, 1790, 2361, 3135
BveI ACCTGC 4 cut(s) 310, 859, 2248, 3252
Cac8I GCNNGC 8 cut(s) 152, 447, 809, 1188, 1448, 1617, 1684, 2664
CciI TCATGA 1 cut(s) 1425
CfoI GCGC 4 cut(s) 268, 445, 575, 2053
Cfr9I CCCGGG 1 cut(s) 244
ClaI ATCGAT 1 cut(s) 1638
CseI GACGC 1 cut(s) 2170
CsiI ACCWGGT 1 cut(s) 253
CspCI CAANNNNNGTGG 4 cut(s) 675, 710, 1450, 1485
DraIII CACNNNGTG 1 cut(s) 257
EaeI YGGCCR 4 cut(s) 208, 373, 851, 2554
Eam1104I CTCTTC 1 cut(s) 2071
EarI CTCTTC 1 cut(s) 2071
EciI GGCGGA 1 cut(s) 1173
Eco130I CCWWGG 2 cut(s) 32, 3322
Eco24I GRGCYC 1 cut(s) 2109
Eco31I GGTCTC 1 cut(s) 292
Eco47I GGWCC 9 cut(s) 485, 518, 632, 677, 737, 797, 1124, 1514, 1724
Eco47III AGCGCT 1 cut(s) 2052
Eco57I CTGAAG 7 cut(s) 675, 1119, 1740, 2076, 2091, 2825, 3261
Eco88I CYCGRG 1 cut(s) 244
Eco91I GGTNACC 1 cut(s) 2572
EcoNI CCTNNNNNAGG 2 cut(s) 21, 513
EcoO109I RGGNCCY 3 cut(s) 518, 797, 1724
EcoO65I GGTNACC 1 cut(s) 2572
EcoRI GAATTC 1 cut(s) 2565
EcoT14I CCWWGG 2 cut(s) 32, 3322
EcoT22I ATGCAT 1 cut(s) 723
EcoT38I GRGCYC 1 cut(s) 2109
ErhI CCWWGG 2 cut(s) 32, 3322
FaqI GGGAC 3 cut(s) 2673, 2793, 3303
FauI CCCGC 1 cut(s) 1499
FblI GTMKAC 1 cut(s) 2436
FokI GGATG 6 cut(s) 184, 1309, 1323, 2222, 2516, 2959
FriOI GRGCYC 1 cut(s) 2109
GlaI GCGC 4 cut(s) 267, 444, 574, 2052
GsaI CCCAGC 1 cut(s) 1086
GsuI CTGGAG 3 cut(s) 6, 2019, 2105
HaeII RGCGCY 1 cut(s) 2054
HapII CCGG 8 cut(s) 120, 245, 293, 578, 758, 2250, 2847, 3005
HgaI GACGC 1 cut(s) 2170
HhaI GCGC 4 cut(s) 268, 445, 575, 2053
Hin6I GCGC 4 cut(s) 266, 443, 573, 2051
HinP1I GCGC 4 cut(s) 266, 443, 573, 2051
HincII GTYRAC 2 cut(s) 1886, 2437
HindII GTYRAC 2 cut(s) 1886, 2437
HinfI GANTC 8 cut(s) 110, 139, 1486, 1757, 1946, 3010, 3101, 3316
HpaII CCGG 8 cut(s) 120, 245, 293, 578, 758, 2250, 2847, 3005
HphI GGTGA 8 cut(s) 225, 375, 675, 1385, 2996, 3019, 3077, 3124
Hpy99I CGWCG 1 cut(s) 2186
HpyAV CCTTC 8 cut(s) 232, 519, 690, 1340, 1715, 2066, 2287, 3285
HpyCH4III ACNGT 7 cut(s) 47, 846, 1570, 2456, 2548, 2767, 3074
HpyCH4IV ACGT 7 cut(s) 1234, 1528, 1786, 2477, 2681, 3030, 3084
HpySE526I ACGT 7 cut(s) 1234, 1528, 1786, 2477, 2681, 3030, 3084
HspAI GCGC 4 cut(s) 266, 443, 573, 2051
LguI GCTCTTC 1 cut(s) 2071
LweI GCATC 7 cut(s) 1287, 1525, 1797, 2349, 2360, 2736, 2959
MabI ACCWGGT 1 cut(s) 253
MaeII ACGT 7 cut(s) 1234, 1528, 1786, 2477, 2681, 3030, 3084
MbiI CCGCTC 1 cut(s) 2878
MfeI CAATTG 2 cut(s) 1898, 2154
MflI RGATCY 3 cut(s) 761, 2990, 3271
MlsI TGGCCA 4 cut(s) 210, 375, 853, 2556
MluNI TGGCCA 4 cut(s) 210, 375, 853, 2556
MlyI GAGTC 3 cut(s) 1480, 1751, 3325
MmeI TCCRAC 5 cut(s) 655, 671, 737, 1940, 2450
Mox20I TGGCCA 4 cut(s) 210, 375, 853, 2556
Mph1103I ATGCAT 1 cut(s) 723
MroXI GAANNNNTTC 2 cut(s) 1911, 3030
MscI TGGCCA 4 cut(s) 210, 375, 853, 2556
MseI TTAA 4 cut(s) 144, 2141, 2480, 2834
MslI CAYNNNNRTG 4 cut(s) 847, 2546, 2600, 3033
Msp20I TGGCCA 4 cut(s) 210, 375, 853, 2556
MspA1I CMGCKG 3 cut(s) 1619, 2096, 3121
MspI CCGG 8 cut(s) 120, 245, 293, 578, 758, 2250, 2847, 3005
MunI CAATTG 2 cut(s) 1898, 2154
Mva1269I GAATGC 4 cut(s) 721, 1011, 1657, 2421
MvnI CGCG 1 cut(s) 1494
NciI CCSGG 5 cut(s) 245, 246, 293, 579, 759
NcoI CCATGG 1 cut(s) 3322
NlaIV GGNNCC 9 cut(s) 30, 66, 252, 340, 432, 699, 1350, 2106, 3328
NmeAIII GCCGAG 2 cut(s) 256, 1096
NmuCI GTSAC 4 cut(s) 381, 2329, 2456, 3130
NsiI ATGCAT 1 cut(s) 723
NspI RCATGY 3 cut(s) 130, 811, 3356
OliI CACNNNNGTG 2 cut(s) 2546, 3033
PaeI GCATGC 1 cut(s) 811
PagI TCATGA 1 cut(s) 1425
PaqCI CACCTGC 1 cut(s) 859
PciI ACATGT 1 cut(s) 3352
PciSI GCTCTTC 1 cut(s) 2071
PcsI WCGNNNNNNNCGW 1 cut(s) 1396
PctI GAATGC 4 cut(s) 721, 1011, 1657, 2421
PdmI GAANNNNTTC 2 cut(s) 1911, 3030
PfeI GAWTC 5 cut(s) 110, 139, 1946, 3010, 3101
PflMI CCANNNNNTGG 6 cut(s) 371, 407, 608, 674, 2039, 2128
PleI GAGTC 3 cut(s) 1480, 1751, 3324
PpsI GAGTC 3 cut(s) 1480, 1751, 3324
PpuMI RGGWCCY 3 cut(s) 518, 797, 1724
PscI ACATGT 1 cut(s) 3352
PshAI GACNNNNGTC 1 cut(s) 3315
PshBI ATTAAT 1 cut(s) 2834
Psp1406I AACGTT 1 cut(s) 2477
Psp5II RGGWCCY 3 cut(s) 518, 797, 1724
PspEI GGTNACC 1 cut(s) 2572
PspFI CCCAGC 1 cut(s) 1082
PspN4I GGNNCC 9 cut(s) 30, 66, 252, 340, 432, 699, 1350, 2106, 3328
PspPPI RGGWCCY 3 cut(s) 518, 797, 1724
PstI CTGCAG 4 cut(s) 307, 1681, 1797, 3171
PsuI RGATCY 3 cut(s) 761, 2990, 3271
PvuII CAGCTG 3 cut(s) 1619, 2096, 3121
RseI CAYNNNNRTG 4 cut(s) 847, 2546, 2600, 3033
SalI GTCGAC 1 cut(s) 2435
SapI GCTCTTC 1 cut(s) 2071
SaqAI TTAA 4 cut(s) 144, 2141, 2480, 2834
ScaI AGTACT 3 cut(s) 1140, 1996, 2399
SchI GAGTC 3 cut(s) 1480, 1751, 3325
SexAI ACCWGGT 1 cut(s) 253
SfaNI GCATC 7 cut(s) 1287, 1525, 1797, 2349, 2360, 2736, 2959
SfcI CTRYAG 4 cut(s) 303, 1677, 1793, 3167
SinI GGWCC 9 cut(s) 485, 518, 632, 677, 737, 797, 1124, 1514, 1724
SmaI CCCGGG 1 cut(s) 246
SmiMI CAYNNNNRTG 4 cut(s) 847, 2546, 2600, 3033
SmlI CTYRAG 2 cut(s) 801, 3056
SmoI CTYRAG 2 cut(s) 801, 3056
SpeI ACTAGT 1 cut(s) 2597
SphI GCATGC 1 cut(s) 811
StyI CCWWGG 2 cut(s) 32, 3322
TaaI ACNGT 7 cut(s) 47, 846, 1570, 2456, 2548, 2767, 3074
TaiI ACGT 7 cut(s) 1237, 1531, 1789, 2480, 2684, 3033, 3087
TaqI TCGA 5 cut(s) 1390, 1638, 1760, 2184, 2436
TatI WGTACW 5 cut(s) 1138, 1623, 1825, 1994, 2397
TauI GCSGC 6 cut(s) 220, 347, 814, 2341, 2669, 3228
TfiI GAWTC 5 cut(s) 110, 139, 1946, 3010, 3101
Tru1I TTAA 4 cut(s) 144, 2141, 2480, 2834
Tru9I TTAA 4 cut(s) 144, 2141, 2480, 2834
TseFI GTSAC 4 cut(s) 381, 2329, 2456, 3130
Tsp45I GTSAC 4 cut(s) 381, 2329, 2456, 3130
TspGWI ACGGA 2 cut(s) 1329, 2575
TspMI CCCGGG 1 cut(s) 244
Van91I CCANNNNNTGG 6 cut(s) 371, 407, 608, 674, 2039, 2128
VneI GTGCAC 2 cut(s) 1246, 1788
VpaK11BI GGWCC 9 cut(s) 485, 518, 632, 677, 737, 797, 1124, 1514, 1724
VspI ATTAAT 1 cut(s) 2834
XagI CCTNNNNNAGG 2 cut(s) 21, 513
XapI RAATTY 8 cut(s) 133, 655, 1110, 1574, 2159, 2565, 2753, 3108
XbaI TCTAGA 2 cut(s) 395, 1846
XceI RCATGY 3 cut(s) 130, 811, 3356
XcmI CCANNNNNNNNNTGG 1 cut(s) 3320
XmaI CCCGGG 1 cut(s) 244
XmaJI CCTAGG 1 cut(s) 32
XmiI GTMKAC 1 cut(s) 2436
XmnI GAANNNNTTC 2 cut(s) 1911, 3030
ZrmI AGTACT 3 cut(s) 1140, 1996, 2399
Zsp2I ATGCAT 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.