Rorug04G0363400

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000554
Physical Location & Seq
Reverse (-)
53574341 .. 53574723
383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0363400.1

Sequence Viewer

Length: 270 bp
ATGTCGGCTTGTTTTGATTTGGTGTTGATTGGGGCTCTGTTGCAGCAGCTCTGGATTTTATCTTCAAATTCTTCTTCTTGCTCAAAGGCTTGTTCTGCTATCTGCTTTATGCTCTTCTGCTGGTTCTGGCAGAGATTCAGCCTGGTGCATCCGCCGGTTTCGATGAGTTTGAAACCCATAAGGGATTGTTCTGGATTACAAAGCTTTCAGCCTTTTCATATAAAGCGATTTTCTTTCCTCTTCTTATTCTTGAGAGTGGATCTTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

89

Amino Acids

10.25

Weight (kDa)

8.93

Isoelectric Point (pI)

76.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000554)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT4G32640 AT4G32640
fragaria_vesca FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000
malus_domestica MD02G1169200.v1.1 MD13G1230500.v1.1 MD15G1281700.v1.1 MD16G1009900.v1.1 MD16G1235300.v1.1
prunus_persica Prupe.1G056500_v2.0.a1 Prupe.1G056500_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1
pyrus_communis pycom02g13590 pycom13g20290 pycom15g24480 pycom16g00970 pycom16g19630
rosa_chinensis RchiOBHm_Chr4g0396591 RchiOBHm_Chr4g0445631
rosa_laevigata RLG00000005723 RLG00000009518
rosa_multiflora Rmu_co8031254.1_g000001 Rmu_co8351119.1_g000001 Rmu_sc0003637.1_g000024 Rmu_sc0010969.1_g000001 Rmu_sc0019383.1_g000002
rosa_roxburghii Rroxscaffold_5G00341440 Rroxscaffold_5G00386110
rosa_rugosa Rorug03G0348600 Rorug03G0348700 Rorug04G0363200 Rorug04G0363300 Rorug04G0363400 Rorug04G0363500
rosa_samantha Rh4AG070600 Rh4AG424700 Rh4AG425100 Rh4BG068500 Rh4BG436900 Rh4CG076300 Rh4CG451400 Rh4DG065600 Rh4DG433400
rosa_wichuraiana Rw4G005630 Rw4G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 152
AclWI GGATC 1 cut(s) 267
AcsI RAATTY 1 cut(s) 67
AgsI TTSAA 2 cut(s) 66, 172
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 2 cut(s) 49, 204
AluI AGCT 2 cut(s) 49, 204
AlwI GGATC 1 cut(s) 267
ApeKI GCWGC 2 cut(s) 43, 46
ApoI RAATTY 1 cut(s) 67
BanII GRGCYC 1 cut(s) 37
BbvI GCAGC 2 cut(s) 55, 58
BciT130I CCWGG 1 cut(s) 143
BisI GCNGC 2 cut(s) 44, 47
BlsI GCNGC 2 cut(s) 45, 48
Bme1390I CCNGG 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 157
Bse118I RCCGGY 1 cut(s) 154
BseBI CCWGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 148
BseXI GCAGC 2 cut(s) 55, 58
BsiSI CCGG 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 1 cut(s) 259
BspACI CCGC 1 cut(s) 152
BspPI GGATC 1 cut(s) 267
BspQI GCTCTTC 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 154
BssAI RCCGGY 1 cut(s) 154
BssMI GATC 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 143
Bst6I CTCTTC 2 cut(s) 119, 245
BstF5I GGATG 1 cut(s) 148
BstKTI GATC 1 cut(s) 262
BstMBI GATC 1 cut(s) 259
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 55, 58
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BtsCI GGATG 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 154
CviJI RGCY 7 cut(s) 8, 35, 49, 89, 141, 204, 211
CviKI_1 RGCY 7 cut(s) 8, 35, 49, 89, 141, 204, 211
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
Eam1104I CTCTTC 2 cut(s) 119, 245
EarI CTCTTC 2 cut(s) 119, 245
EciI GGCGGA 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 37
FaiI YATR 4 cut(s) 110, 179, 219, 221
Fnu4HI GCNGC 2 cut(s) 44, 47
FokI GGATG 1 cut(s) 135
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 2 cut(s) 44, 47
GluI GCNGC 2 cut(s) 44, 47
HapII CCGG 1 cut(s) 155
HindIII AAGCTT 1 cut(s) 202
HinfI GANTC 1 cut(s) 135
HpaII CCGG 1 cut(s) 155
Hpy188III TCNNGA 3 cut(s) 52, 192, 250
HpyCH4V TGCA 2 cut(s) 43, 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
Kzo9I GATC 1 cut(s) 259
LguI GCTCTTC 1 cut(s) 119
LpnPI CCDG 7 cut(s) 37, 106, 112, 128, 155, 168, 177
Lsp1109I GCAGC 2 cut(s) 55, 58
LweI GCATC 1 cut(s) 157
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 5 cut(s) 54, 63, 66, 106, 232
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 1 cut(s) 67
MnlI CCTC 1 cut(s) 248
MspI CCGG 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeII GATC 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 135
PkrI GCNGC 2 cut(s) 45, 48
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PsuI RGATCY 1 cut(s) 259
SapI GCTCTTC 1 cut(s) 119
SatI GCNGC 2 cut(s) 44, 47
Sau3AI GATC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 1 cut(s) 37
SetI ASST 3 cut(s) 51, 206, 269
SfaNI GCATC 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
Sse9I AATT 1 cut(s) 67
SsiI CCGC 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 141
TaqI TCGA 1 cut(s) 161
TasI AATT 1 cut(s) 67
TfiI GAWTC 1 cut(s) 135
TseI GCWGC 2 cut(s) 43, 46
TspDTI ATGAA 1 cut(s) 206
XapI RAATTY 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.