Rorug03G0348700

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000554
Physical Location & Seq
Reverse (-)
42518966 .. 42519223
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0348700.1

Sequence Viewer

Length: 258 bp
ATGGCTCTTAGCTTTACTTATTGTCACTTCGCCCATGTATACCGCGAAGCAAATGGTGTGGCAAATAGACTTTCATACCTTGCTATTTTCGATAGTGGAGATGACTTATGGAGAGATGAGCCTCCTGCTATTATTCGGGATGTGCTCTACGAGGATCATTGTACCTTTCCATGGGGCTTTGGTTTCATGTCCTCCATGCAGTATCATATTTCTTCTGTTAATTATATGTACAGTCGTGGGGCTGATCCTCCAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

85

Amino Acids

9.81

Weight (kDa)

5.0

Isoelectric Point (pI)

55.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000554)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT4G32640 AT4G32640
fragaria_vesca FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000
malus_domestica MD02G1169200.v1.1 MD13G1230500.v1.1 MD15G1281700.v1.1 MD16G1009900.v1.1 MD16G1235300.v1.1
prunus_persica Prupe.1G056500_v2.0.a1 Prupe.1G056500_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1
pyrus_communis pycom02g13590 pycom13g20290 pycom15g24480 pycom16g00970 pycom16g19630
rosa_chinensis RchiOBHm_Chr4g0396591 RchiOBHm_Chr4g0445631
rosa_laevigata RLG00000005723 RLG00000009518
rosa_multiflora Rmu_co8031254.1_g000001 Rmu_co8351119.1_g000001 Rmu_sc0003637.1_g000024 Rmu_sc0010969.1_g000001 Rmu_sc0019383.1_g000002
rosa_roxburghii Rroxscaffold_5G00341440 Rroxscaffold_5G00386110
rosa_rugosa Rorug03G0348600 Rorug03G0348700 Rorug04G0363200 Rorug04G0363300 Rorug04G0363400 Rorug04G0363500
rosa_samantha Rh4AG070600 Rh4AG424700 Rh4AG425100 Rh4BG068500 Rh4BG436900 Rh4CG076300 Rh4CG451400 Rh4DG065600 Rh4DG433400
rosa_wichuraiana Rw4G005630 Rw4G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 39
AccII CGCG 1 cut(s) 45
AciI CCGC 1 cut(s) 43
AclWI GGATC 2 cut(s) 162, 239
AfaI GTAC 2 cut(s) 163, 230
AfiI CCNNNNNNNGG 1 cut(s) 171
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
Alw21I GWGCWC 1 cut(s) 147
AlwI GGATC 2 cut(s) 162, 239
Bbv12I GWGCWC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 170
Bsc4I CCNNNNNNNGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 147
Bsp1407I TGTACA 1 cut(s) 228
Bsp143I GATC 2 cut(s) 154, 244
Bsp19I CCATGG 1 cut(s) 170
BspACI CCGC 1 cut(s) 43
BspFNI CGCG 1 cut(s) 45
BspPI GGATC 2 cut(s) 162, 239
BsrGI TGTACA 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 2 cut(s) 154, 244
BssNAI GTATAC 1 cut(s) 40
BssT1I CCWWGG 1 cut(s) 170
Bst1107I GTATAC 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 233
BstAUI TGTACA 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 8
BstDSI CCRYGG 1 cut(s) 170
BstF5I GGATG 1 cut(s) 145
BstFNI CGCG 1 cut(s) 45
BstKTI GATC 2 cut(s) 157, 247
BstMBI GATC 2 cut(s) 154, 244
BstUI CGCG 1 cut(s) 45
BstZ17I GTATAC 1 cut(s) 40
BtgI CCRYGG 1 cut(s) 170
BtsCI GGATG 1 cut(s) 145
Csp6I GTAC 2 cut(s) 162, 229
CspCI CAANNNNNGTGG 2 cut(s) 39, 74
CviAII CATG 4 cut(s) 35, 171, 187, 196
CviJI RGCY 5 cut(s) 5, 12, 121, 177, 242
CviKI_1 RGCY 5 cut(s) 5, 12, 121, 177, 242
CviQI GTAC 2 cut(s) 162, 229
DdeI CTNAG 1 cut(s) 8
DpnI GATC 2 cut(s) 156, 246
DpnII GATC 2 cut(s) 154, 244
Eco130I CCWWGG 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 4 cut(s) 38, 174, 190, 199
FatI CATG 4 cut(s) 34, 170, 186, 195
FblI GTMKAC 1 cut(s) 39
FokI GGATG 1 cut(s) 152
Hin1II CATG 4 cut(s) 38, 174, 190, 199
Hpy166II GTNNAC 1 cut(s) 40
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 1 cut(s) 199
HpyF3I CTNAG 1 cut(s) 8
Hsp92II CATG 4 cut(s) 38, 174, 190, 199
Kzo9I GATC 2 cut(s) 154, 244
LpnPI CCDG 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 23
MalI GATC 2 cut(s) 156, 246
MboI GATC 2 cut(s) 154, 244
MboII GAAGA 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 1 cut(s) 220
MnlI CCTC 4 cut(s) 132, 145, 202, 258
MseI TTAA 1 cut(s) 219
MvnI CGCG 1 cut(s) 45
NcoI CCATGG 1 cut(s) 170
NdeII GATC 2 cut(s) 154, 244
NlaIII CATG 4 cut(s) 38, 174, 190, 199
NmuCI GTSAC 1 cut(s) 23
RsaI GTAC 2 cut(s) 163, 230
RsaNI GTAC 2 cut(s) 162, 229
SaqAI TTAA 1 cut(s) 219
Sau3AI GATC 2 cut(s) 154, 244
SduI GDGCHC 1 cut(s) 147
SetI ASST 3 cut(s) 14, 81, 167
Sse9I AATT 1 cut(s) 220
SsiI CCGC 1 cut(s) 43
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 233
TaqI TCGA 1 cut(s) 90
TasI AATT 1 cut(s) 220
TatI WGTACW 1 cut(s) 228
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseFI GTSAC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 63, 175
XmiI GTMKAC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.