Rmu_co8351119.1_g000001

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8351119.1
OG0000554
Physical Location & Seq
Forward (+)
175 .. 910
736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8351119.1_g000001.1.cds

Sequence Viewer

Length: 405 bp
atggtaaccataaaacatgatgacaaattgcaggacggctcagaatgtgtgtttcagtgtgcgcttctgtacactactgtgtatggccaaagaatgattcgagttttaacactagccctaccatgcacaagtatgctgaataatcttttccgcacagctgatttggatactcagtttgcttgtatcttgaagcaaggggctaatgaaatcccttctagcccactcctgcaagtccgtgaacgactgaccgaccgttgcatcagcattctctgttcttatcgtaaattttgtgctacagtaacatcaagtggacaacttattcttccagaaacactgaagcttctacctctatacatccttggtatcttcccttatgcttataagcttatagtttattttgtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

134

Amino Acids

15.19

Weight (kDa)

8.49

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000554)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT4G32640 AT4G32640
fragaria_vesca FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000
malus_domestica MD02G1169200.v1.1 MD13G1230500.v1.1 MD15G1281700.v1.1 MD16G1009900.v1.1 MD16G1235300.v1.1
prunus_persica Prupe.1G056500_v2.0.a1 Prupe.1G056500_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1
pyrus_communis pycom02g13590 pycom13g20290 pycom15g24480 pycom16g00970 pycom16g19630
rosa_chinensis RchiOBHm_Chr4g0396591 RchiOBHm_Chr4g0445631
rosa_laevigata RLG00000005723 RLG00000009518
rosa_multiflora Rmu_co8031254.1_g000001 Rmu_co8351119.1_g000001 Rmu_sc0003637.1_g000024 Rmu_sc0010969.1_g000001 Rmu_sc0019383.1_g000002
rosa_roxburghii Rroxscaffold_5G00341440 Rroxscaffold_5G00386110
rosa_rugosa Rorug03G0348600 Rorug03G0348700 Rorug04G0363200 Rorug04G0363300 Rorug04G0363400 Rorug04G0363500
rosa_samantha Rh4AG070600 Rh4AG424700 Rh4AG425100 Rh4BG068500 Rh4BG436900 Rh4CG076300 Rh4CG451400 Rh4DG065600 Rh4DG433400
rosa_wichuraiana Rw4G005630 Rw4G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
AciI CCGC 1 cut(s) 151
AcoI YGGCCR 1 cut(s) 85
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 356
AfaI GTAC 1 cut(s) 71
AgsI TTSAA 1 cut(s) 190
AjuI GAANNNNNNNTTGG 2 cut(s) 81, 113
AleI CACNNNNGTG 1 cut(s) 77
AluBI AGCT 3 cut(s) 158, 340, 385
AluI AGCT 3 cut(s) 158, 340, 385
AoxI GGCC 1 cut(s) 85
ApoI RAATTY 1 cut(s) 284
AspLEI GCGC 1 cut(s) 64
BalI TGGCCA 1 cut(s) 87
BceAI ACGGC 1 cut(s) 52
BciVI GTATCC 1 cut(s) 160
BfaI CTAG 2 cut(s) 113, 216
BfmI CTRYAG 1 cut(s) 294
BfuI GTATCC 1 cut(s) 160
BmsI GCATC 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 358
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 1 cut(s) 354
BseMII CTCAG 2 cut(s) 54, 185
Bsh1285I CGRYCG 1 cut(s) 253
BshFI GGCC 1 cut(s) 87
BsiEI CGRYCG 1 cut(s) 253
BsmI GAATGC 1 cut(s) 264
BsnI GGCC 1 cut(s) 87
Bsp1407I TGTACA 1 cut(s) 69
BspACI CCGC 1 cut(s) 151
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 2 cut(s) 53, 184
BsrGI TGTACA 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 358
BssT1I CCWWGG 1 cut(s) 358
Bst4CI ACNGT 3 cut(s) 79, 254, 298
BstAUI TGTACA 1 cut(s) 69
BstDEI CTNAG 2 cut(s) 40, 171
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 1 cut(s) 354
BstHHI GCGC 1 cut(s) 64
BstMCI CGRYCG 1 cut(s) 253
BstPI GGTNACC 1 cut(s) 4
BstSFI CTRYAG 1 cut(s) 294
BsuI GTATCC 1 cut(s) 160
BsuRI GGCC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 354
BtsIMutI CAGTG 2 cut(s) 62, 332
CfoI GCGC 1 cut(s) 64
Csp6I GTAC 1 cut(s) 70
CviAII CATG 2 cut(s) 17, 123
CviJI RGCY 8 cut(s) 39, 87, 116, 158, 200, 219, 340, 385
CviKI_1 RGCY 8 cut(s) 39, 87, 116, 158, 200, 219, 340, 385
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 2 cut(s) 40, 171
EaeI YGGCCR 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 356
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 358
FaeI CATG 2 cut(s) 20, 126
FaiI YATR 9 cut(s) 11, 18, 84, 124, 134, 352, 375, 381, 389
FatI CATG 2 cut(s) 16, 122
FokI GGATG 1 cut(s) 341
FspBI CTAG 2 cut(s) 113, 216
GlaI GCGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 87
HhaI GCGC 1 cut(s) 64
Hin1II CATG 2 cut(s) 20, 126
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HindIII AAGCTT 2 cut(s) 338, 383
HinfI GANTC 1 cut(s) 97
Hpy166II GTNNAC 3 cut(s) 72, 239, 311
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 2 cut(s) 187, 326
Hpy8I GTNNAC 3 cut(s) 72, 239, 311
HpyAV CCTTC 1 cut(s) 222
HpyCH4III ACNGT 3 cut(s) 79, 254, 298
HpyCH4V TGCA 4 cut(s) 31, 126, 229, 258
HpyF3I CTNAG 2 cut(s) 40, 171
Hsp92II CATG 2 cut(s) 20, 126
HspAI GCGC 1 cut(s) 62
LpnPI CCDG 3 cut(s) 17, 239, 339
LweI GCATC 1 cut(s) 267
MaeI CTAG 2 cut(s) 113, 216
MaeIII GTNAC 2 cut(s) 4, 298
MboII GAAGA 2 cut(s) 314, 358
MlsI TGGCCA 1 cut(s) 87
MluCI AATT 2 cut(s) 26, 284
MluNI TGGCCA 1 cut(s) 87
MnlI CCTC 1 cut(s) 357
Mox20I TGGCCA 1 cut(s) 87
MscI TGGCCA 1 cut(s) 87
MseI TTAA 1 cut(s) 107
MslI CAYNNNNRTG 2 cut(s) 77, 131
Msp20I TGGCCA 1 cut(s) 87
MspA1I CMGCKG 1 cut(s) 158
Mva1269I GAATGC 1 cut(s) 264
NlaIII CATG 2 cut(s) 20, 126
OliI CACNNNNGTG 1 cut(s) 77
PctI GAATGC 1 cut(s) 264
PfeI GAWTC 1 cut(s) 97
PsiI TTATAA 1 cut(s) 381
PspEI GGTNACC 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
RseI CAYNNNNRTG 2 cut(s) 77, 131
SaqAI TTAA 1 cut(s) 107
SetI ASST 4 cut(s) 160, 342, 349, 387
SfaNI GCATC 1 cut(s) 267
SfcI CTRYAG 1 cut(s) 294
SmiMI CAYNNNNRTG 2 cut(s) 77, 131
Sse9I AATT 2 cut(s) 26, 284
SsiI CCGC 1 cut(s) 151
SspMI CTAG 2 cut(s) 113, 216
StyI CCWWGG 1 cut(s) 358
TaaI ACNGT 3 cut(s) 79, 254, 298
TaqI TCGA 1 cut(s) 100
TaqII GACCGA 1 cut(s) 263
TasI AATT 2 cut(s) 26, 284
TatI WGTACW 1 cut(s) 69
TfiI GAWTC 1 cut(s) 97
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TscAI CASTG 2 cut(s) 62, 339
TspDTI ATGAA 1 cut(s) 219
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 2 cut(s) 62, 339
XapI RAATTY 1 cut(s) 284
XspI CTAG 2 cut(s) 113, 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.