Rh4BG436900

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000554
Physical Location & Seq
Reverse (-)
57794288 .. 57804165
9878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG436900.1

Sequence Viewer

Length: 2997 bp
ATGGTGACTCCGGTGCCTCCAGGGCCACCTAGACCTGGTAATCATCCACCAAACCCTAATGTTAACCCCAATACCCAATCTTTATCTGATAATATGCAAAATTTGAATCTCAATCGGCCGCCACCGCCTTCAATGCCCCATCCTAGACCTTCATCGACGCCGTATCCGGCGCCATTTTCTAGGCCTGGCCCTCCTACTCCGGCGCCGGTGCGGCCTTCTGGACCCCCACCGCCTTCATTTCCTCCGGGAAGGCCTTCTGGCCCGCCTGTTAGTCAAAGTCATCCTTCTCCACTTGGCTACAGACCACCTCCTCCTACCGGTACTTTCCCACCGAACCGTCAAATGGCACCACCTCCGCCACCGCCTGGTGCCCGACTGGGCGGGATGGGGCCTCCTCCTCCAGTTATGCCTTCAGCAGGTGCTGTGATGAATAATGGGCCGCCGAATTTTGCACCAGGAGGTTTCCAGGCTGGGCCACGTTTTCCTCCTCCAGCTGGGATTGCATCACAACTGACGCCGCCGCCTCCTCTCGGACCTCCAACAGCAATGGCAGGAGCTTGGGCGCCACCGCAGCCTCAAACCATGCATGCTTTTTTGGGCAGTGCTAGTCCTCCAGTGCAACAGCAGCGATCACCATTTGCAGGGGCAGCCCAACCTCCTTCAGTTCCTTCTTATGGATCACAACCTTGGTCAATGCAACCCAACCAAGTGCCTCCACCTCCACCAATTTCCCAATTTCCCCAAGCACCTAGAATGTTGGGAATGCCACCACCCATGCCAAATCAGTCTATGACTGCCATATCACACGCTGTGGGTCAAACTGGAGCCCCAGTGGCAGGTCCATCTAAGATTGATCCTAGTCAAATTCCGCGACCCATTCCAGATTCCTCCGTTGTTCTGCATGAAACTCGCCAAGGCAATCAGGCCAACCCTCCTCCGCCTGCTACAAGCGATTACATTGTCAGAGACACTGGAAACTGCAGCCCACGTAATATGAGGTGCACTATCAATCAGATCCCATGCACTGCTGACCTCTTGACGACATCAGGGATGCAGTTGGCTTTGCTGGTCCAACCCTTGGCCCTTCCTCATCCTTCTGAAGAGCCCATACAAGTCATGGATTTAGGTGAAAGTGGTCCTGTTCGTTGTTCTCGTTGCAAAGGCTATATAAATCCTTTCATGAAGTTCATTGATCAGGGAAGGCAGTTCATCTGCAACTTGTGTGGATTTACTGATGAGACTCCCCGTGACTACCACTGCAACCTTGGTCCAGATGGTAGGCGTAGAGATGCTGATGATAGACCCGAGCTTTGTAGAGGAATGGTGGAAATTGTTGCTCCAAAAGAATACATGGTGCGTGATCCAATGCTGGCTATGTATTTCTTCCTTATTGATGTATCCATGAATGCCATACAAACTGGAGCAACTGCAGCTGCATGCACTGCAATCAGTCAAGTTATTTCCGATCTTCCTGAAGGTCCTCGGACAAAGGTGGGAATTGCAACATTTGACTGTACTATTCATTTTTATAATCTGAAACGTGCTTTACAGCAGCCATTGATGCTCATTGTTCCTGATATACAAGATGTTTATACTCCTCTGGAGACTGATGTGATTGTTCAGCTTTCTGAGTGCCGTCAGCATTTAGAGCTACTGCTTGAAAGCATCCCATCCATGTTTGAAAATAACAAAACAGCTGACTCAGCCTTTGGTGCTGCAGTCAAGGCTGCATTCTTGGCAATGAAAAGTAATGGAGGAAAACTTTTGGTATTTCAGTCAGTATTGCCATCTGTTGGGACTGGAGCCCTTTCCGCTAGAGAGGCTGAAGGAAGAACGAATACTTCTGCTGGTGAGAAGGAGGCCCATAAATTACTTCAACCAGCCGATAAGACTTTAGAATCAATGGCAATGGAAGTTGCTGAGTATCAGGTTTGTGTAGATATTTTTATTACCACCCAGACTTACATGGACATAGCTTCTATCTCTGTCATCCCAAGAACTACTGGTGGACAGATCTATTACTATTACCCTTTCTCTGCTGTTACTGACACTGCAAAGATCTACAATGATCTTAAATGGAATATTACAAGGCCTCAAGGTTTTGAGGCAGTGATGCGTGTGCGATGCAGCCAGGGTCTCCAAGTTAACGAGTACCGCGGGAACTTCTGCAAGCGCATTCCTACAGATGTTGACCTACCTGGGATTGACTCTGACAAAACTATAATGGTAACCCTAAAACATGATGACAAATTGCAGGACGGCTCAGAATGTGTGTTTCAGTGTGCGCTTCTGTACACTACTGTGTCTGGCCAAAGAAGGATTCGAGTTTTAACACTAGCCCTACCATGCACAAGTATGCTGAATAATCTTTTCCGCACAGCTGATTTGGATACTCAGTTTGCTTGTATCTTGAAGCAAGGGGCTAATGAAATCCCTTCTAGCCCACTCCTGCAAGTCCGTGAACGACTGACTGACCGTTGCATCAGCATTCTCTGTTCTTATCGTAAATTTTGTGCTACAGTAACATCAAGTGGACAACTTATTCTTCCAGAAACACTGAAGCTTCTACCTCTATACATCCTTGCTTTAACGAAAAGTACGGGATTGCGATCTTCTGGGAAAATAGATGAACGATCTTTTTGGATCAACTATGTGTCCTCTGTTTCCACTGCTTTAGCAGTAGCACTTGTTTATCCACGGATGCTGGCAATCCACAACCTTAATTGTAAGGATGACGCATCTCTTTGCCCTTCTGCAATTCCACTTTCTAGTGAGCATATCAGTGATGAGGGAATTTATCTTCTCGAAAATGGAGAGGATTGTCTAATTTATGTAGGGAGCTCAGTTGATCCAGATATCTTGAACAAGTTGTTTGGAATTCCCTCAGTTGATGAAATTCCTACTCAGGTACATCTTATGAATAATGCAACAAGTTATCATTTTATAAGTAATGTCTGCAGAGTATTCTTGGATCTGAATGCCAGGAACTTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

998

Amino Acids

108.03

Weight (kDa)

6.78

Isoelectric Point (pI)

50.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Sec23_Sec24 PF04810 380 - 418 2.4e-16 Sec23/Sec24 zinc finger
Sec23_trunk PF04811 455 - 695 2e-77 Sec23/Sec24 trunk domain
Sec23_BS PF08033 700 - 784 3.7e-27 Sec23/Sec24 beta-sandwich domain
Sec23_helical PF04815 795 - 892 6.2e-25 Sec23/Sec24 helical domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000554)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT4G32640 AT4G32640
fragaria_vesca FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000
malus_domestica MD02G1169200.v1.1 MD13G1230500.v1.1 MD15G1281700.v1.1 MD16G1009900.v1.1 MD16G1235300.v1.1
prunus_persica Prupe.1G056500_v2.0.a1 Prupe.1G056500_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1
pyrus_communis pycom02g13590 pycom13g20290 pycom15g24480 pycom16g00970 pycom16g19630
rosa_chinensis RchiOBHm_Chr4g0396591 RchiOBHm_Chr4g0445631
rosa_laevigata RLG00000005723 RLG00000009518
rosa_multiflora Rmu_co8031254.1_g000001 Rmu_co8351119.1_g000001 Rmu_sc0003637.1_g000024 Rmu_sc0010969.1_g000001 Rmu_sc0019383.1_g000002
rosa_roxburghii Rroxscaffold_5G00341440 Rroxscaffold_5G00386110
rosa_rugosa Rorug03G0348600 Rorug03G0348700 Rorug04G0363200 Rorug04G0363300 Rorug04G0363400 Rorug04G0363500
rosa_samantha Rh4AG070600 Rh4AG424700 Rh4AG425100 Rh4BG068500 Rh4BG436900 Rh4CG076300 Rh4CG451400 Rh4DG065600 Rh4DG433400
rosa_wichuraiana Rw4G005630 Rw4G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1530, 2945
AarI CACCTGC 1 cut(s) 407
Acc36I ACCTGC 2 cut(s) 407, 827
AccB1I GGYRCC 6 cut(s) 13, 169, 202, 346, 368, 562
AccB7I CCANNNNNTGG 3 cut(s) 365, 1078, 1793
AccII CGCG 2 cut(s) 871, 2157
AclWI GGATC 7 cut(s) 685, 848, 1009, 1355, 2651, 2843, 2979
AcoI YGGCCR 2 cut(s) 116, 2308
AcsI RAATTY 7 cut(s) 100, 445, 864, 2507, 2793, 2877, 2895
AcuI CTGAAG 6 cut(s) 396, 645, 1119, 1494, 1845, 2579
AcyI GRCGYC 5 cut(s) 158, 170, 203, 515, 563
AdeI CACNNNGTG 1 cut(s) 811
AfaI GTAC 6 cut(s) 322, 1516, 2153, 2294, 2599, 2910
AgeI ACCGGT 1 cut(s) 317
AgsI TTSAA 7 cut(s) 106, 132, 1661, 1682, 1877, 2413, 2863
AjnI CCWGG 9 cut(s) 19, 34, 184, 364, 454, 465, 2130, 2197, 2981
AjuI GAANNNNNNNTTGG 2 cut(s) 2304, 2336
AleI CACNNNNGTG 1 cut(s) 2300
Alw21I GWGCWC 2 cut(s) 1004, 2843
Alw26I GTCTC 4 cut(s) 960, 1232, 1598, 2141
Alw44I GTGCAC 1 cut(s) 1000
AlwI GGATC 7 cut(s) 685, 848, 1009, 1355, 2651, 2843, 2979
AlwNI CAGNNNCTG 1 cut(s) 422
Ama87I CYCGRG 1 cut(s) 1304
ApaLI GTGCAC 1 cut(s) 1000
ApoI RAATTY 7 cut(s) 100, 445, 864, 2507, 2793, 2877, 2895
ArsI GACNNNNNNTTYG 4 cut(s) 1293, 1325, 1691, 1723
AsiGI ACCGGT 1 cut(s) 317
Asp700I GAANNNNTTC 1 cut(s) 253
AspLEI GCGC 5 cut(s) 172, 205, 565, 2175, 2287
AsuC2I CCSGG 1 cut(s) 246
AsuHPI GGTGA 4 cut(s) 16, 624, 1139, 1862
AvaI CYCGRG 1 cut(s) 1304
AvaII GGWCC 7 cut(s) 221, 533, 839, 1069, 1136, 1268, 1478
BaeGI GKGCMC 2 cut(s) 373, 1004
BalI TGGCCA 1 cut(s) 2310
BanI GGYRCC 6 cut(s) 13, 169, 202, 346, 368, 562
BanII GRGCYC 4 cut(s) 829, 1107, 1807, 2843
BarI GAAGNNNNNNTAC 4 cut(s) 1092, 1124, 1822, 1854
Bbv12I GWGCWC 2 cut(s) 1004, 2843
BccI CCATC 6 cut(s) 147, 379, 850, 1268, 1678, 1795
BceAI ACGGC 3 cut(s) 145, 1620, 2275
BcgI CGANNNNNNTGC 2 cut(s) 890, 924
BciT130I CCWGG 9 cut(s) 21, 36, 186, 366, 456, 467, 2132, 2199, 2983
BciVI GTATCC 3 cut(s) 174, 1408, 2383
BclI TGATCA 1 cut(s) 1192
BcnI CCSGG 1 cut(s) 246
BcoDI GTCTC 4 cut(s) 960, 1232, 1598, 2141
BfmI CTRYAG 7 cut(s) 298, 979, 1428, 1716, 2181, 2517, 2956
BfoI RGCGCY 3 cut(s) 173, 206, 566
BfuAI ACCTGC 2 cut(s) 407, 827
BfuI GTATCC 3 cut(s) 174, 1408, 2383
BglI GCCNNNNNGGC 3 cut(s) 22, 211, 833
BglII AGATCT 2 cut(s) 2013, 2058
Bme18I GGWCC 7 cut(s) 221, 533, 839, 1069, 1136, 1268, 1478
BmeT110I CYCGRG 1 cut(s) 1304
BmrI ACTGGG 2 cut(s) 386, 824
BmuI ACTGGG 2 cut(s) 386, 824
BpmI CTGGAG 7 cut(s) 384, 474, 597, 843, 1440, 1622, 1821
BpuEI CTTGAG 1 cut(s) 2079
BpuMI CCSGG 1 cut(s) 246
BsaAI YACGTR 1 cut(s) 989
BsaBI GATNNNNATC 1 cut(s) 2608
BsaHI GRCGYC 5 cut(s) 158, 170, 203, 515, 563
BsaI GGTCTC 1 cut(s) 2141
BsaWI WCCGGW 2 cut(s) 10, 317
BsaXI ACNNNNNCTCC 2 cut(s) 816, 846
Bse118I RCCGGY 2 cut(s) 205, 317
Bse1I ACTGG 9 cut(s) 381, 401, 614, 826, 830, 976, 1423, 1804, 2008
Bse3DI GCAATG 3 cut(s) 552, 1746, 1914
Bse8I GATNNNNATC 1 cut(s) 2608
BseBI CCWGG 9 cut(s) 21, 36, 186, 366, 456, 467, 2132, 2199, 2983
BseJI GATNNNNATC 1 cut(s) 2608
BseMI GCAATG 3 cut(s) 552, 1746, 1914
BseMII CTCAG 8 cut(s) 1620, 1716, 1911, 2277, 2408, 2856, 2898, 2918
BseNI ACTGG 9 cut(s) 381, 401, 614, 826, 830, 976, 1423, 1804, 2008
BseRI GAGGAG 7 cut(s) 300, 384, 387, 477, 516, 924, 1587
BseSI GKGCMC 2 cut(s) 373, 1004
BseX3I CGGCCG 1 cut(s) 116
BseYI CCCAGC 2 cut(s) 470, 494
Bsh1236I CGCG 2 cut(s) 871, 2157
Bsh1285I CGRYCG 1 cut(s) 119
BshNI GGYRCC 6 cut(s) 13, 169, 202, 346, 368, 562
BshTI ACCGGT 1 cut(s) 317
BsiEI CGRYCG 1 cut(s) 119
BsiHKAI GWGCWC 2 cut(s) 1004, 2843
BsiHKCI CYCGRG 1 cut(s) 1304
BsiSI CCGG 6 cut(s) 11, 167, 200, 206, 245, 318
BslFI GGGAC 1 cut(s) 1810
BsmAI GTCTC 4 cut(s) 960, 1232, 1598, 2141
BsmFI GGGAC 1 cut(s) 1810
BsmI GAATGC 6 cut(s) 768, 1411, 1730, 2175, 2487, 2983
Bso31I GGTCTC 1 cut(s) 2141
BsoBI CYCGRG 1 cut(s) 1304
Bsp1286I GDGCHC 6 cut(s) 373, 829, 1004, 1107, 1807, 2843
Bsp1407I TGTACA 1 cut(s) 2292
BspCNI CTCAG 8 cut(s) 1621, 1715, 1912, 2276, 2407, 2855, 2897, 2917
BspFNI CGCG 2 cut(s) 871, 2157
BspHI TCATGA 1 cut(s) 1179
BspMAI CTGCAG 4 cut(s) 983, 1432, 1720, 2960
BspMI ACCTGC 2 cut(s) 407, 827
BspPI GGATC 7 cut(s) 685, 848, 1009, 1355, 2651, 2843, 2979
BspQI GCTCTTC 1 cut(s) 1095
BspT107I GGYRCC 6 cut(s) 13, 169, 202, 346, 368, 562
BspTNI GGTCTC 1 cut(s) 2141
BsrDI GCAATG 3 cut(s) 552, 1746, 1914
BsrFI RCCGGY 2 cut(s) 205, 317
BsrGI TGTACA 1 cut(s) 2292
BsrI ACTGG 9 cut(s) 381, 401, 614, 826, 830, 976, 1423, 1804, 2008
BssAI RCCGGY 2 cut(s) 205, 317
BssNI GRCGYC 5 cut(s) 158, 170, 203, 515, 563
BssT1I CCWWGG 4 cut(s) 686, 913, 1077, 1264
Bst2UI CCWGG 9 cut(s) 21, 36, 186, 366, 456, 467, 2132, 2199, 2983
Bst4CI ACNGT 5 cut(s) 338, 1514, 2302, 2477, 2521
Bst6I CTCTTC 1 cut(s) 1095
BstACI GRCGYC 5 cut(s) 158, 170, 203, 515, 563
BstAPI GCANNNNNTGC 1 cut(s) 1442
BstAUI TGTACA 1 cut(s) 2292
BstBAI YACGTR 1 cut(s) 989
BstC8I GCNNGC 7 cut(s) 263, 588, 942, 1371, 1438, 2171, 2706
BstDEI CTNAG 9 cut(s) 846, 1629, 1702, 1920, 2263, 2394, 2842, 2884, 2904
BstDSI CCRYGG 2 cut(s) 2155, 2696
BstEII GGTNACC 1 cut(s) 2227
BstENI CCTNNNNNAGG 1 cut(s) 414
BstFNI CGCG 2 cut(s) 871, 2157
BstH2I RGCGCY 3 cut(s) 173, 206, 566
BstHHI GCGC 5 cut(s) 172, 205, 565, 2175, 2287
BstMAI GTCTC 4 cut(s) 960, 1232, 1598, 2141
BstMCI CGRYCG 1 cut(s) 119
BstNI CCWGG 9 cut(s) 21, 36, 186, 366, 456, 467, 2132, 2199, 2983
BstNSI RCATGY 2 cut(s) 590, 1440
BstPI GGTNACC 1 cut(s) 2227
BstSFI CTRYAG 7 cut(s) 298, 979, 1428, 1716, 2181, 2517, 2956
BstSLI GKGCMC 2 cut(s) 373, 1004
BstUI CGCG 2 cut(s) 871, 2157
BstX2I RGATCY 4 cut(s) 1014, 2013, 2058, 2971
BstYI RGATCY 4 cut(s) 1014, 2013, 2058, 2971
BstZI CGGCCG 1 cut(s) 116
BsuI GTATCC 3 cut(s) 174, 1408, 2383
BtgI CCRYGG 2 cut(s) 2155, 2696
BtgZI GCGATG 1 cut(s) 2137
BtsI GCAGTG 7 cut(s) 607, 1023, 1255, 1440, 2049, 2115, 2667
BveI ACCTGC 2 cut(s) 407, 827
Cac8I GCNNGC 7 cut(s) 263, 588, 942, 1371, 1438, 2171, 2706
CaiI CAGNNNCTG 1 cut(s) 422
CciI TCATGA 1 cut(s) 1179
CfoI GCGC 5 cut(s) 172, 205, 565, 2175, 2287
Cfr10I RCCGGY 2 cut(s) 205, 317
Cfr42I CCGCGG 1 cut(s) 2158
CseI GACGC 3 cut(s) 166, 523, 2744
CsiI ACCWGGT 1 cut(s) 34
Csp6I GTAC 6 cut(s) 321, 1515, 2152, 2293, 2598, 2909
CspAI ACCGGT 1 cut(s) 317
CspCI CAANNNNNGTGG 2 cut(s) 1204, 1239
CviQI GTAC 6 cut(s) 321, 1515, 2152, 2293, 2598, 2909
DdeI CTNAG 9 cut(s) 846, 1629, 1702, 1920, 2263, 2394, 2842, 2884, 2904
DinI GGCGCC 3 cut(s) 171, 204, 564
DraIII CACNNNGTG 1 cut(s) 811
EaeI YGGCCR 2 cut(s) 116, 2308
EagI CGGCCG 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 1095
EarI CTCTTC 1 cut(s) 1095
EciI GGCGGA 2 cut(s) 345, 927
Ecl136II GAGCTC 1 cut(s) 2841
EclXI CGGCCG 1 cut(s) 116
Eco130I CCWWGG 4 cut(s) 686, 913, 1077, 1264
Eco147I AGGCCT 3 cut(s) 184, 253, 2092
Eco24I GRGCYC 4 cut(s) 829, 1107, 1807, 2843
Eco31I GGTCTC 1 cut(s) 2141
Eco32I GATATC 1 cut(s) 2857
Eco47I GGWCC 7 cut(s) 221, 533, 839, 1069, 1136, 1268, 1478
Eco52I CGGCCG 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 2841
Eco57I CTGAAG 6 cut(s) 396, 645, 1119, 1494, 1845, 2579
Eco88I CYCGRG 1 cut(s) 1304
Eco91I GGTNACC 1 cut(s) 2227
EcoICRI GAGCTC 1 cut(s) 2841
EcoNI CCTNNNNNAGG 1 cut(s) 414
EcoO109I RGGNCCY 2 cut(s) 389, 1478
EcoO65I GGTNACC 1 cut(s) 2227
EcoRI GAATTC 1 cut(s) 2877
EcoRII CCWGG 9 cut(s) 19, 34, 184, 364, 454, 465, 2130, 2197, 2981
EcoRV GATATC 1 cut(s) 2857
EcoT14I CCWWGG 4 cut(s) 686, 913, 1077, 1264
EcoT22I ATGCAT 1 cut(s) 588
EcoT38I GRGCYC 4 cut(s) 829, 1107, 1807, 2843
EgeI GGCGCC 3 cut(s) 171, 204, 564
EheI GGCGCC 3 cut(s) 171, 204, 564
ErhI CCWWGG 4 cut(s) 686, 913, 1077, 1264
FalI AAGNNNNNCTT 2 cut(s) 268, 300
FaqI GGGAC 1 cut(s) 1810
FauI CCCGC 3 cut(s) 270, 374, 2150
FbaI TGATCA 1 cut(s) 1192
FriOI GRGCYC 4 cut(s) 829, 1107, 1807, 2843
GlaI GCGC 5 cut(s) 171, 204, 564, 2174, 2286
GsaI CCCAGC 2 cut(s) 474, 498
GsuI CTGGAG 7 cut(s) 384, 474, 597, 843, 1440, 1622, 1821
HaeII RGCGCY 3 cut(s) 173, 206, 566
HapII CCGG 6 cut(s) 11, 167, 200, 206, 245, 318
HgaI GACGC 3 cut(s) 166, 523, 2744
HhaI GCGC 5 cut(s) 172, 205, 565, 2175, 2287
Hin1I GRCGYC 5 cut(s) 158, 170, 203, 515, 563
Hin6I GCGC 5 cut(s) 170, 203, 563, 2173, 2285
HinP1I GCGC 5 cut(s) 170, 203, 563, 2173, 2285
HincII GTYRAC 3 cut(s) 64, 2146, 2191
HindII GTYRAC 3 cut(s) 64, 2146, 2191
HindIII AAGCTT 1 cut(s) 2561
HinfI GANTC 8 cut(s) 7, 106, 884, 1240, 1700, 1898, 2207, 2320
HpaI GTTAAC 2 cut(s) 64, 2146
HpaII CCGG 6 cut(s) 11, 167, 200, 206, 245, 318
HphI GGTGA 4 cut(s) 16, 624, 1139, 1862
Hpy166II GTNNAC 8 cut(s) 64, 1002, 2009, 2146, 2191, 2295, 2462, 2534
Hpy8I GTNNAC 8 cut(s) 64, 1002, 2009, 2146, 2191, 2295, 2462, 2534
Hpy99I CGWCG 1 cut(s) 160
HpyCH4III ACNGT 5 cut(s) 338, 1514, 2302, 2477, 2521
HpyCH4IV ACGT 3 cut(s) 478, 988, 1540
HpyF3I CTNAG 9 cut(s) 846, 1629, 1702, 1920, 2263, 2394, 2842, 2884, 2904
HpySE526I ACGT 3 cut(s) 478, 988, 1540
Hsp92I GRCGYC 5 cut(s) 158, 170, 203, 515, 563
HspAI GCGC 5 cut(s) 170, 203, 563, 2173, 2285
KasI GGCGCC 3 cut(s) 169, 202, 562
Ksp22I TGATCA 1 cut(s) 1192
KspAI GTTAAC 2 cut(s) 64, 2146
KspI CCGCGG 1 cut(s) 2158
LguI GCTCTTC 1 cut(s) 1095
LmnI GCTCC 6 cut(s) 554, 824, 1342, 1421, 1802, 2838
MabI ACCWGGT 1 cut(s) 34
MaeII ACGT 3 cut(s) 478, 988, 1540
MaeIII GTNAC 5 cut(s) 4, 1247, 2041, 2227, 2521
MboII GAAGA 7 cut(s) 1112, 1375, 1460, 1842, 2537, 2604, 2792
MflI RGATCY 4 cut(s) 1014, 2013, 2058, 2971
MhlI GDGCHC 6 cut(s) 373, 829, 1004, 1107, 1807, 2843
MlsI TGGCCA 1 cut(s) 2310
MluNI TGGCCA 1 cut(s) 2310
Mly113I GGCGCC 3 cut(s) 170, 203, 563
MlyI GAGTC 3 cut(s) 1234, 1694, 2201
MmeI TCCRAC 2 cut(s) 563, 1096
Mox20I TGGCCA 1 cut(s) 2310
Mph1103I ATGCAT 1 cut(s) 588
MroXI GAANNNNTTC 1 cut(s) 253
MscI TGGCCA 1 cut(s) 2310
MseI TTAA 7 cut(s) 63, 2073, 2145, 2330, 2588, 2721, 2995
MslI CAYNNNNRTG 3 cut(s) 2300, 2354, 2781
Msp20I TGGCCA 1 cut(s) 2310
MspA1I CMGCKG 5 cut(s) 494, 1433, 1697, 2157, 2381
MspI CCGG 6 cut(s) 11, 167, 200, 206, 245, 318
Mva1269I GAATGC 6 cut(s) 768, 1411, 1730, 2175, 2487, 2983
MvaI CCWGG 9 cut(s) 21, 36, 186, 366, 456, 467, 2132, 2199, 2983
MvnI CGCG 2 cut(s) 871, 2157
NarI GGCGCC 3 cut(s) 170, 203, 563
NciI CCSGG 1 cut(s) 246
NmuCI GTSAC 2 cut(s) 4, 1247
NsiI ATGCAT 1 cut(s) 588
NspI RCATGY 2 cut(s) 590, 1440
OliI CACNNNNGTG 1 cut(s) 2300
PaeI GCATGC 2 cut(s) 590, 1440
PagI TCATGA 1 cut(s) 1179
PaqCI CACCTGC 1 cut(s) 407
PceI AGGCCT 3 cut(s) 184, 253, 2092
PciSI GCTCTTC 1 cut(s) 1095
PcsI WCGNNNNNNNCGW 1 cut(s) 1150
PctI GAATGC 6 cut(s) 768, 1411, 1730, 2175, 2487, 2983
PdmI GAANNNNTTC 1 cut(s) 253
PfeI GAWTC 4 cut(s) 106, 884, 1898, 2320
PflMI CCANNNNNTGG 3 cut(s) 365, 1078, 1793
PfoI TCCNGGA 1 cut(s) 244
PinAI ACCGGT 1 cut(s) 317
PleI GAGTC 3 cut(s) 1234, 1694, 2201
PluTI GGCGCC 3 cut(s) 173, 206, 566
PpsI GAGTC 3 cut(s) 1234, 1694, 2201
Ppu21I YACGTR 1 cut(s) 989
PpuMI RGGWCCY 1 cut(s) 1478
PsiI TTATAA 2 cut(s) 1530, 2945
Psp124BI GAGCTC 1 cut(s) 2843
Psp5II RGGWCCY 1 cut(s) 1478
Psp6I CCWGG 9 cut(s) 19, 34, 184, 364, 454, 465, 2130, 2197, 2981
PspEI GGTNACC 1 cut(s) 2227
PspFI CCCAGC 2 cut(s) 470, 494
PspGI CCWGG 9 cut(s) 19, 34, 184, 364, 454, 465, 2130, 2197, 2981
PspPPI RGGWCCY 1 cut(s) 1478
PstI CTGCAG 4 cut(s) 983, 1432, 1720, 2960
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 4 cut(s) 1014, 2013, 2058, 2971
PvuII CAGCTG 4 cut(s) 494, 1433, 1697, 2381
RsaI GTAC 6 cut(s) 322, 1516, 2153, 2294, 2599, 2910
RsaNI GTAC 6 cut(s) 321, 1515, 2152, 2293, 2598, 2909
RseI CAYNNNNRTG 3 cut(s) 2300, 2354, 2781
SacI GAGCTC 1 cut(s) 2843
SacII CCGCGG 1 cut(s) 2158
SapI GCTCTTC 1 cut(s) 1095
SaqAI TTAA 7 cut(s) 63, 2073, 2145, 2330, 2588, 2721, 2995
SchI GAGTC 3 cut(s) 1234, 1694, 2201
SduI GDGCHC 6 cut(s) 373, 829, 1004, 1107, 1807, 2843
SexAI ACCWGGT 1 cut(s) 34
SfcI CTRYAG 7 cut(s) 298, 979, 1428, 1716, 2181, 2517, 2956
SfoI GGCGCC 3 cut(s) 171, 204, 564
Sfr303I CCGCGG 1 cut(s) 2158
SgrAI CRCCGGYG 1 cut(s) 205
SgrBI CCGCGG 1 cut(s) 2158
SinI GGWCC 7 cut(s) 221, 533, 839, 1069, 1136, 1268, 1478
SmiMI CAYNNNNRTG 3 cut(s) 2300, 2354, 2781
SmlI CTYRAG 1 cut(s) 2094
SmoI CTYRAG 1 cut(s) 2094
SphI GCATGC 2 cut(s) 590, 1440
SseBI AGGCCT 3 cut(s) 184, 253, 2092
SspDI GGCGCC 3 cut(s) 169, 202, 562
SspI AATATT 1 cut(s) 2083
SstI GAGCTC 1 cut(s) 2843
StuI AGGCCT 3 cut(s) 184, 253, 2092
StyI CCWWGG 4 cut(s) 686, 913, 1077, 1264
TaaI ACNGT 5 cut(s) 338, 1514, 2302, 2477, 2521
TaiI ACGT 3 cut(s) 481, 991, 1543
TaqI TCGA 3 cut(s) 155, 2323, 2805
TatI WGTACW 2 cut(s) 1514, 2292
TauI GCSGC 5 cut(s) 121, 214, 442, 520, 523
TfiI GAWTC 4 cut(s) 106, 884, 1898, 2320
Tru1I TTAA 7 cut(s) 63, 2073, 2145, 2330, 2588, 2721, 2995
Tru9I TTAA 7 cut(s) 63, 2073, 2145, 2330, 2588, 2721, 2995
TseFI GTSAC 2 cut(s) 4, 1247
Tsp45I GTSAC 2 cut(s) 4, 1247
TspGWI ACGGA 3 cut(s) 880, 2447, 2713
Van91I CCANNNNNTGG 3 cut(s) 365, 1078, 1793
VneI GTGCAC 1 cut(s) 1000
VpaK11BI GGWCC 7 cut(s) 221, 533, 839, 1069, 1136, 1268, 1478
XagI CCTNNNNNAGG 1 cut(s) 414
XapI RAATTY 7 cut(s) 100, 445, 864, 2507, 2793, 2877, 2895
XceI RCATGY 2 cut(s) 590, 1440
XcmI CCANNNNNNNNNTGG 2 cut(s) 1114, 1262
XmnI GAANNNNTTC 1 cut(s) 253
Zsp2I ATGCAT 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.