Rmu_co8031254.1_g000001

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8031254.1
OG0000554
Physical Location & Seq
Forward (+)
40 .. 546
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8031254.1_g000001.1.cds

Sequence Viewer

Length: 507 bp
atggcagcttttgtgcctcctccaggggcacctaggcccaataacagtaacactccaccaggggcaccgcccccaaattacaaccctaacaatgctcagagaaaccccgattcgttatccggtaacatgcagaatttgaatcttaatcgccagcagtctcctcccatgcccaattctgctcctagaccatcatcatcatcatccccttttggccaatctccgcccttccagtcatcaccgcctcccccgggggcacctggtgcttctgcgccttattctcggcctggccctcccccggcgagacctgcagcaccccgtccacaagcaacattaccccctggcaccgccgcagtaagacctactggcccacctgttggccagtcttcaccgtttgggtctagaccgcctcctggggcttttcctcctggggtagctcctacttctggcccagcttccagtcctttccagacaacgggtttgccaagtggtccaggttcaacgccacca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

169

Amino Acids

16.75

Weight (kDa)

12.0

Isoelectric Point (pI)

98.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000554)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT4G32640 AT4G32640
fragaria_vesca FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000
malus_domestica MD02G1169200.v1.1 MD13G1230500.v1.1 MD15G1281700.v1.1 MD16G1009900.v1.1 MD16G1235300.v1.1
prunus_persica Prupe.1G056500_v2.0.a1 Prupe.1G056500_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1
pyrus_communis pycom02g13590 pycom13g20290 pycom15g24480 pycom16g00970 pycom16g19630
rosa_chinensis RchiOBHm_Chr4g0396591 RchiOBHm_Chr4g0445631
rosa_laevigata RLG00000005723 RLG00000009518
rosa_multiflora Rmu_co8031254.1_g000001 Rmu_co8351119.1_g000001 Rmu_sc0003637.1_g000024 Rmu_sc0010969.1_g000001 Rmu_sc0019383.1_g000002
rosa_roxburghii Rroxscaffold_5G00341440 Rroxscaffold_5G00386110
rosa_rugosa Rorug03G0348600 Rorug03G0348700 Rorug04G0363200 Rorug04G0363300 Rorug04G0363400 Rorug04G0363500
rosa_samantha Rh4AG070600 Rh4AG424700 Rh4AG425100 Rh4BG068500 Rh4BG436900 Rh4CG076300 Rh4CG451400 Rh4DG065600 Rh4DG433400
rosa_wichuraiana Rw4G005630 Rw4G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AccB1I GGYRCC 4 cut(s) 28, 64, 253, 341
AccB7I CCANNNNNTGG 1 cut(s) 374
AciI CCGC 6 cut(s) 68, 221, 239, 345, 348, 404
AcoI YGGCCR 2 cut(s) 211, 376
AcsI RAATTY 1 cut(s) 133
AdeI CACNNNGTG 1 cut(s) 260
AfiI CCNNNNNNNGG 7 cut(s) 23, 248, 295, 374, 410, 443, 472
AgsI TTSAA 2 cut(s) 139, 498
AjnI CCWGG 8 cut(s) 22, 58, 256, 283, 337, 409, 424, 490
AluBI AGCT 3 cut(s) 8, 434, 452
AluI AGCT 3 cut(s) 8, 434, 452
Alw26I GTCTC 2 cut(s) 162, 295
Ama87I CYCGRG 1 cut(s) 247
AoxI GGCC 7 cut(s) 35, 211, 281, 286, 364, 376, 445
ApeKI GCWGC 2 cut(s) 5, 308
ApoI RAATTY 1 cut(s) 133
ArsI GACNNNNNNTTYG 2 cut(s) 460, 492
AspA2I CCTAGG 1 cut(s) 32
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 5 cut(s) 36, 287, 365, 446, 488
AsuC2I CCSGG 3 cut(s) 248, 249, 296
AsuHPI GGTGA 2 cut(s) 228, 378
AvaI CYCGRG 1 cut(s) 247
AvaII GGWCC 1 cut(s) 488
AvrII CCTAGG 1 cut(s) 32
BaeGI GKGCMC 3 cut(s) 31, 67, 256
BalI TGGCCA 2 cut(s) 213, 378
BanI GGYRCC 4 cut(s) 28, 64, 253, 341
BbsI GAAGAC 1 cut(s) 375
BbvI GCAGC 2 cut(s) 17, 320
BccI CCATC 1 cut(s) 196
BciT130I CCWGG 8 cut(s) 24, 60, 258, 285, 339, 411, 426, 492
BcnI CCSGG 3 cut(s) 248, 249, 296
BcoDI GTCTC 2 cut(s) 162, 295
BfaI CTAG 3 cut(s) 33, 183, 399
BfmI CTRYAG 1 cut(s) 306
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 3 cut(s) 6, 309, 348
BlnI CCTAGG 1 cut(s) 32
BlsI GCNGC 3 cut(s) 7, 310, 349
Bme18I GGWCC 1 cut(s) 488
BmeT110I CYCGRG 1 cut(s) 247
BmgT120I GGNCC 5 cut(s) 36, 287, 365, 446, 488
BmiI GGNNCC 4 cut(s) 30, 66, 255, 343
BpiI GAAGAC 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 6
BpuMI CCSGG 3 cut(s) 248, 249, 296
BsaI GGTCTC 1 cut(s) 295
BsaWI WCCGGW 1 cut(s) 119
Bsc4I CCNNNNNNNGG 7 cut(s) 23, 248, 295, 374, 410, 443, 472
Bse1I ACTGG 4 cut(s) 229, 367, 379, 456
BseBI CCWGG 8 cut(s) 24, 60, 258, 285, 339, 411, 426, 492
BseGI GGATG 1 cut(s) 200
BseLI CCNNNNNNNGG 7 cut(s) 23, 248, 295, 374, 410, 443, 472
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 4 cut(s) 229, 367, 379, 456
BseRI GAGGAG 2 cut(s) 9, 150
BseSI GKGCMC 3 cut(s) 31, 67, 256
BseXI GCAGC 2 cut(s) 17, 320
BseYI CCCAGC 1 cut(s) 448
BshFI GGCC 7 cut(s) 37, 213, 283, 288, 366, 378, 447
BshNI GGYRCC 4 cut(s) 28, 64, 253, 341
BsiHKCI CYCGRG 1 cut(s) 247
BsiSI CCGG 3 cut(s) 120, 248, 296
BslI CCNNNNNNNGG 7 cut(s) 23, 248, 295, 374, 410, 443, 472
BsmAI GTCTC 2 cut(s) 162, 295
BsnI GGCC 7 cut(s) 37, 213, 283, 288, 366, 378, 447
Bso31I GGTCTC 1 cut(s) 295
BsoBI CYCGRG 1 cut(s) 247
Bsp1286I GDGCHC 3 cut(s) 31, 67, 256
BspACI CCGC 6 cut(s) 68, 221, 239, 345, 348, 404
BspANI GGCC 7 cut(s) 37, 213, 283, 288, 366, 378, 447
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 4 cut(s) 30, 66, 255, 343
BspMAI CTGCAG 1 cut(s) 310
BspMI ACCTGC 1 cut(s) 313
BspT107I GGYRCC 4 cut(s) 28, 64, 253, 341
BspTNI GGTCTC 1 cut(s) 295
BsrI ACTGG 4 cut(s) 229, 367, 379, 456
BssT1I CCWWGG 1 cut(s) 32
Bst2UI CCWGG 8 cut(s) 24, 60, 258, 285, 339, 411, 426, 492
Bst4CI ACNGT 2 cut(s) 47, 390
BstAPI GCANNNNNTGC 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 96
BstENI CCTNNNNNAGG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 200
BstHHI GCGC 1 cut(s) 271
BstMAI GTCTC 2 cut(s) 162, 295
BstMWI GCNNNNNNNGC 2 cut(s) 260, 305
BstNI CCWGG 8 cut(s) 24, 60, 258, 285, 339, 411, 426, 492
BstNSI RCATGY 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 306
BstSLI GKGCMC 3 cut(s) 31, 67, 256
BstV1I GCAGC 2 cut(s) 17, 320
BstV2I GAAGAC 1 cut(s) 375
BsuRI GGCC 7 cut(s) 37, 213, 283, 288, 366, 378, 447
BtsCI GGATG 1 cut(s) 200
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 152
CfoI GCGC 1 cut(s) 271
Cfr13I GGNCC 5 cut(s) 36, 287, 365, 446, 488
Cfr9I CCCGGG 1 cut(s) 247
CsiI ACCWGGT 1 cut(s) 256
CviAII CATG 2 cut(s) 127, 166
DdeI CTNAG 1 cut(s) 96
DraIII CACNNNGTG 1 cut(s) 260
EaeI YGGCCR 2 cut(s) 211, 376
EciI GGCGGA 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 488
Eco88I CYCGRG 1 cut(s) 247
EcoNI CCTNNNNNAGG 1 cut(s) 21
EcoRII CCWGG 8 cut(s) 22, 58, 256, 283, 337, 409, 424, 490
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 2 cut(s) 130, 169
FaiI YATR 2 cut(s) 128, 167
FatI CATG 2 cut(s) 126, 165
Fnu4HI GCNGC 3 cut(s) 6, 309, 348
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 3 cut(s) 6, 309, 348
FspBI CTAG 3 cut(s) 33, 183, 399
GlaI GCGC 1 cut(s) 270
GluI GCNGC 3 cut(s) 6, 309, 348
GsaI CCCAGC 1 cut(s) 452
GsuI CTGGAG 1 cut(s) 6
HaeIII GGCC 7 cut(s) 37, 213, 283, 288, 366, 378, 447
HapII CCGG 3 cut(s) 120, 248, 296
HhaI GCGC 1 cut(s) 271
Hin1II CATG 2 cut(s) 130, 169
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HinfI GANTC 2 cut(s) 110, 139
HpaII CCGG 3 cut(s) 120, 248, 296
HphI GGTGA 2 cut(s) 228, 378
Hpy166II GTNNAC 1 cut(s) 320
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 2 cut(s) 399, 466
Hpy8I GTNNAC 1 cut(s) 320
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 2 cut(s) 47, 390
HpyCH4V TGCA 2 cut(s) 130, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 305
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 2 cut(s) 130, 169
HspAI GCGC 1 cut(s) 269
LmnI GCTCC 2 cut(s) 184, 439
Lsp1109I GCAGC 2 cut(s) 17, 320
MabI ACCWGGT 1 cut(s) 256
MaeI CTAG 3 cut(s) 33, 183, 399
MaeIII GTNAC 2 cut(s) 47, 122
MboII GAAGA 1 cut(s) 375
MhlI GDGCHC 3 cut(s) 31, 67, 256
MlsI TGGCCA 2 cut(s) 213, 378
MluCI AATT 3 cut(s) 76, 133, 172
MluNI TGGCCA 2 cut(s) 213, 378
MnlI CCTC 7 cut(s) 27, 30, 171, 252, 300, 417, 432
Mox20I TGGCCA 2 cut(s) 213, 378
MscI TGGCCA 2 cut(s) 213, 378
MseI TTAA 1 cut(s) 144
Msp20I TGGCCA 2 cut(s) 213, 378
MspI CCGG 3 cut(s) 120, 248, 296
MvaI CCWGG 8 cut(s) 24, 60, 258, 285, 339, 411, 426, 492
MwoI GCNNNNNNNGC 2 cut(s) 260, 305
NciI CCSGG 3 cut(s) 248, 249, 296
NlaIII CATG 2 cut(s) 130, 169
NlaIV GGNNCC 4 cut(s) 30, 66, 255, 343
NmeAIII GCCGAG 1 cut(s) 259
NspI RCATGY 1 cut(s) 130
PfeI GAWTC 2 cut(s) 110, 139
PflMI CCANNNNNTGG 1 cut(s) 374
PkrI GCNGC 3 cut(s) 7, 310, 349
Psp6I CCWGG 8 cut(s) 22, 58, 256, 283, 337, 409, 424, 490
PspFI CCCAGC 1 cut(s) 448
PspGI CCWGG 8 cut(s) 22, 58, 256, 283, 337, 409, 424, 490
PspN4I GGNNCC 4 cut(s) 30, 66, 255, 343
PspPI GGNCC 5 cut(s) 36, 287, 365, 446, 488
PstI CTGCAG 1 cut(s) 310
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 3 cut(s) 6, 309, 348
Sau96I GGNCC 5 cut(s) 36, 287, 365, 446, 488
SduI GDGCHC 3 cut(s) 31, 67, 256
SetI ASST 9 cut(s) 10, 34, 259, 307, 361, 373, 436, 454, 496
SexAI ACCWGGT 1 cut(s) 256
SfcI CTRYAG 1 cut(s) 306
SinI GGWCC 1 cut(s) 488
SmaI CCCGGG 1 cut(s) 249
Sse9I AATT 3 cut(s) 76, 133, 172
SsiI CCGC 6 cut(s) 68, 221, 239, 345, 348, 404
SspMI CTAG 3 cut(s) 33, 183, 399
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 2 cut(s) 47, 390
TasI AATT 3 cut(s) 76, 133, 172
TauI GCSGC 1 cut(s) 350
TfiI GAWTC 2 cut(s) 110, 139
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseI GCWGC 2 cut(s) 5, 308
TspMI CCCGGG 1 cut(s) 247
Van91I CCANNNNNTGG 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 488
XagI CCTNNNNNAGG 1 cut(s) 21
XapI RAATTY 1 cut(s) 133
XbaI TCTAGA 1 cut(s) 398
XceI RCATGY 1 cut(s) 130
XmaI CCCGGG 1 cut(s) 247
XmaJI CCTAGG 1 cut(s) 32
XspI CTAG 3 cut(s) 33, 183, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.