Rh4DG065600

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000554
Physical Location & Seq
Reverse (-)
9868429 .. 9882843
14415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG065600.1

Sequence Viewer

Length: 3390 bp
ATGGCAGCTTTTGTGCCTCCTCCAGGGGCACCTAGGCCCAATAACAGTAACACTCCACCAGGGGCACCACCCCCAAATTACAACCCTAACAATGCTCAGAGAAACCCCGATTCGTTATCCGGTAACATGCAGAATTTGAATCTTAATCGCCAGCAGCCTCCTCCCATGCCCAATTCTGCTCCTAGACCATCATCATCATCATCATCCCCTTTTGGCCAACCGCCGCCCTTCCAGTCATCACCGCCTCCCCCGGGGGCACCTGGTGCTTCTGCGCCTTATTCTCGGCCTGGCCCTCCCCCGGCGAGACCTGCAGCACCCCGTCCACAAGCAACATTACCCCCTGGCACCGCCGCAGTTAGACCTACTGGCCCACCTGTTGGCCAGTCTTCACCTTTTGGGTCTAGACCGCCTCCTGGGGCTTTTCCTCCTGGGGTAGCTCCTACTTCTGCGCCAGCTTCCAGTCCTTTCCAGACAACGGGTTTGCCAAGTGGTCCAACGCCACCACCGCCTTCATCAGGTCCTCGCCCTGGTCCTGGGCCGTTCGCTAGTGGTCAGGCTGTGCCCCCTATGGGCGCACCGGGTAGAATGAGTAATGGGCCACCGGTCTTTGGTTCTGGGGCTGTGCCAGGTGGACCTCGTTTTCCTCCAACTGGAAATTTACCTCAACCACCTGTTGGATCTTCACCAACTTCAGTGGCTCCTCCTCGTGCTCCAACCATGCATTCGGTGCTCGGTGGTTCAGCAGTCGGTGCTCCACCAGGATCTACTGCCCAACAAGCGCCGCCATTTTCATCAGGTCCTCAAGGCATGCGGCCTCCTCCTCCTGGTTCTCCTTATAGCCCACAGTCATGGCCAATGCAACAAGGGCAGGTGGCTCAACCTCCACAATTTCCTGGGTCTGCTCCACCTCCACAATTTCCCGGCTCTGCTCCACCTCCACAATTTCCTGGCTCTTCTCCACCCCCACAATTTCCTGGCTCTGCTCAACCACCTAGAATGTATGGAATGCCACCACAACCACTGCCAAATCAGTCCATGACTACCATCTCATCGGCTGTTGGTCAAACTGGAACTCCTATGGCTGGGTCATCAAAGATTGATCCCAATCAAATTCCTCGGCCTGGACCAAGTTCTTCAGTACTTCTGCATGAAACTCGTCAGGCCAATCAAGCAAATCCACCTCCGCCTGCTACAAGTGATTATATCGTCAGAGACACTGGGAATTGCAGTCCACGTTACATGAGGTGCACCATCAATCAGATACCATGCACTGCTGATCTTTTGACAACATCAGGGATGCCGTTAGCTTTGTTGGTTGAACCTTTTGCCCTTCCTCATCCATCTGAGGAACCAATCCAAGTTGTAGATTTTGGTGAAAGTGGCCCTGTTCGATGTTCTCGTTGCAAAGGCTACATAAATCCTTTCATGAGGTTCATAGACCAGGGCAGGCAATTCATCTGCAATTTGTGTGGATTTACTGATGAGACTCCCCGCGACTACCACTGCAATCTAGGTCCAGATGGCAGACGTAGAGATGCTGATGATCGGCCTGAGCTATGTAGGGGAACAGTTGAATTTGTTGCCTCAAAAGAATACATGGTGCGTGATCCCATGCCAGCTGTGTACTTCTTCCTTATCGATGTATCCATGAATGCCATTCAAACTGGTGCAACTGCTGCAGCTTGCAGTGCAATCAATCAAGTTATTGCTGATCTTCCTGAAGGTCCTCGGACAAGGGTGGGGATAGCAACATTTGACTCGACAATCCATTTTTACAATTTGAAACGTGCACTGCAGCAGCCTTTGATGCTTATTGTTCCTGATGTACAAGATGTTTACACTCCTCTAGAGACTGATGTAGTTGTTCAGCTTTCCGAGTGCCGTCAACATTTGGAGCAATTGCTGGAAAGTATTCCAACTATGTTTCAGAATAGTAAAACTGCTGAATCAGCTTTTGGTGCAGCAATCAAGGCTGCTTTCTTGGCAATAAAGAGTACTGGAGGGAAACTTTTGGTGTTTCAGTCAGTGTTGCCATCAACTGGAATTGGAGCGCTTTCAGCTAGAGAGGCTGAAGGAAGAGCTAATATATCTTCAACTGAGAAGGAGCCCAATAAATTACTCCAGCCCGTGGACAAAACTTTAAAGACATTGGCAATTGAATTTGCTGAATATCAGGTTTGCGTCGATTTATTTATCACTACCCAGTCATACATAGATATTGCTTCTATCTCAGTCATCCCCAGAACAACCGGAGGGCAGGTTTACTATTATTATCCCTTCTCAGCTCTCTCTGATCCTGCAAAGCTATATAATGATCTTAGATGGAATGTCACAAGGCCGCAAGGTTTTGAGGCAGTGATGCGTGTAAGATGCAGCCAGGGTATTCAAGTTCAAGAGTACTTTGGAAACTTTTGCAAACGCATTCCAACAGATGTCGACCTACCTGGGATTGACTGTGACAAAACTATTATGGTAACATTAAAGCATGATGACAAATTACAGGATGGCTCAGAATGTTCTTTCCAGTGTGCTGTTTTATACACGACTGTGTATGGCCAACGGAGAATTCGGATTACCACTTTGTCTCTGCCATGCACTAGTATGCTAAGTAATCTGTTTCGCGCTGCTGATTTGGACACTCAGTTTTCATGTTACATGAAGCAAGCGGCAAATGAAATCACGTCAAGTCCCCTCTTGCGTGTACGGGAACAAATGACAAATCTTTGCATCAATAGTCTGCTTTCATACCGCAAATTCTGTGCTACTGTATCATCTTCGGGACAGCTTATTCTTCCAGAGGCACTGAAGCTCCTGCCTCTATACACCCTTGCATTAATCAAAAGTACCGGACTACGAACTGATGGAAAAATTGATGAGCGGTCTTTCTGGATCAACCATGTTTCCTCCCTGTCTGTACCTTTGGCAGTTCCACTGGTGTATCCCAGGATGGTGGCTGTCCATGACCTTGATGCTAAAAAGGAGGGTGATGGATCTCTTATTCCTCCGGTGATTCCACTTTCTAGCGAACACGTTCGTGATGATGGAATATATCTTCTTGAGAATGGTGAGGACTGTTTAATATACGTTGGGAACTCGGTGGATTCTGGAATTTTACAACAGTTGTTTGGCGTCACCACTGCTGATGAACTTCCTACTCAGTTTGTGCTGCAGCAGTATGATAATTCATTATCAAAGAAGCTGAATGATGTGGTAAATGAAATACGCCGCCAGAGATGTTCCTACCTGCGATTGAAATTGTGCAAGAAAGGAGATCCTTCAGGAGCATTCTTCTTATCACATTTGGTTGAAGACCAGAGTCCCCATGGCCCCTCCTATGTTGAGTTTCTGGTACATGTCCATCGGCAAATACAGATAAAAATGACTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

1129

Amino Acids

121.04

Weight (kDa)

8.19

Isoelectric Point (pI)

55.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Sec23_Sec24 PF04810 462 - 500 3.4e-16 Sec23/Sec24 zinc finger
Sec23_trunk PF04811 537 - 777 1.1e-80 Sec23/Sec24 trunk domain
Sec23_BS PF08033 782 - 866 5.9e-27 Sec23/Sec24 beta-sandwich domain
Sec23_helical PF04815 877 - 975 6.7e-25 Sec23/Sec24 helical domain
Gelsolin PF00626 1001 - 1067 2.4e-08 Gelsolin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000554)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT4G32640 AT4G32640
fragaria_vesca FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000
malus_domestica MD02G1169200.v1.1 MD13G1230500.v1.1 MD15G1281700.v1.1 MD16G1009900.v1.1 MD16G1235300.v1.1
prunus_persica Prupe.1G056500_v2.0.a1 Prupe.1G056500_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1
pyrus_communis pycom02g13590 pycom13g20290 pycom15g24480 pycom16g00970 pycom16g19630
rosa_chinensis RchiOBHm_Chr4g0396591 RchiOBHm_Chr4g0445631
rosa_laevigata RLG00000005723 RLG00000009518
rosa_multiflora Rmu_co8031254.1_g000001 Rmu_co8351119.1_g000001 Rmu_sc0003637.1_g000024 Rmu_sc0010969.1_g000001 Rmu_sc0019383.1_g000002
rosa_roxburghii Rroxscaffold_5G00341440 Rroxscaffold_5G00386110
rosa_rugosa Rorug03G0348600 Rorug03G0348700 Rorug04G0363200 Rorug04G0363300 Rorug04G0363400 Rorug04G0363500
rosa_samantha Rh4AG070600 Rh4AG424700 Rh4AG425100 Rh4BG068500 Rh4BG436900 Rh4CG076300 Rh4CG451400 Rh4DG065600 Rh4DG433400
rosa_wichuraiana Rw4G005630 Rw4G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 859
Acc36I ACCTGC 4 cut(s) 316, 859, 2248, 3252
AccB1I GGYRCC 4 cut(s) 28, 64, 256, 344
AccB7I CCANNNNNTGG 4 cut(s) 377, 674, 2039, 2128
AccBSI CCGCTC 1 cut(s) 2878
AccI GTMKAC 1 cut(s) 2436
AccII CGCG 2 cut(s) 1494, 2622
AclWI GGATC 8 cut(s) 685, 769, 1094, 1601, 2288, 2897, 2998, 3266
AcoI YGGCCR 4 cut(s) 214, 379, 851, 2554
AcsI RAATTY 8 cut(s) 133, 655, 1110, 1574, 2159, 2565, 2753, 3108
AcuI CTGAAG 6 cut(s) 675, 1119, 1740, 2091, 2825, 3261
AcyI GRCGYC 1 cut(s) 3129
AdeI CACNNNGTG 1 cut(s) 263
AfaI GTAC 9 cut(s) 1140, 1625, 1827, 1996, 2399, 2703, 2845, 2916, 3351
AfeI AGCGCT 1 cut(s) 2052
AflIII ACRYGT 2 cut(s) 3028, 3352
AgeI ACCGGT 1 cut(s) 601
AhlI ACTAGT 1 cut(s) 2597
AjiI CACGTC 1 cut(s) 2682
AjuI GAANNNNNNNTTGG 6 cut(s) 706, 738, 1938, 1970, 2550, 2582
AleI CACNNNNGTG 2 cut(s) 2546, 3033
Alw21I GWGCWC 5 cut(s) 712, 732, 754, 1250, 1792
Alw26I GTCTC 5 cut(s) 298, 1206, 1478, 1844, 2589
Alw44I GTGCAC 2 cut(s) 1246, 1788
AlwI GGATC 8 cut(s) 685, 769, 1094, 1601, 2288, 2897, 2998, 3266
Ama87I CYCGRG 1 cut(s) 250
Aor51HI AGCGCT 1 cut(s) 2052
ApaLI GTGCAC 2 cut(s) 1246, 1788
ApoI RAATTY 8 cut(s) 133, 655, 1110, 1574, 2159, 2565, 2753, 3108
ArsI GACNNNNNNTTYG 2 cut(s) 463, 495
AseI ATTAAT 1 cut(s) 2834
AsiGI ACCGGT 1 cut(s) 601
Asp700I GAANNNNTTC 2 cut(s) 1911, 3030
AspA2I CCTAGG 1 cut(s) 32
AspLEI GCGC 6 cut(s) 274, 451, 575, 781, 2053, 2624
AsuC2I CCSGG 5 cut(s) 251, 252, 299, 579, 921
AsuHPI GGTGA 8 cut(s) 231, 381, 675, 1385, 2996, 3019, 3077, 3124
AvaI CYCGRG 1 cut(s) 250
AvaII GGWCC 8 cut(s) 491, 518, 530, 632, 797, 1124, 1514, 1724
AvrII CCTAGG 1 cut(s) 32
BaeGI GKGCMC 6 cut(s) 31, 67, 259, 564, 1250, 1792
BaeI ACNNNNGTAYC 2 cut(s) 2921, 2954
BalI TGGCCA 4 cut(s) 216, 381, 853, 2556
BanI GGYRCC 4 cut(s) 28, 64, 256, 344
BanII GRGCYC 1 cut(s) 2109
BauI CACGAG 1 cut(s) 705
BbsI GAAGAC 2 cut(s) 378, 3315
Bbv12I GWGCWC 5 cut(s) 712, 732, 754, 1250, 1792
BceAI ACGGC 3 cut(s) 523, 1285, 1866
BcgI CGANNNNNNTGC 2 cut(s) 1136, 1170
BciVI GTATCC 2 cut(s) 1654, 2949
BcnI CCSGG 5 cut(s) 251, 252, 299, 579, 921
BcoDI GTCTC 5 cut(s) 298, 1206, 1478, 1844, 2589
BcuI ACTAGT 1 cut(s) 2597
BfmI CTRYAG 4 cut(s) 309, 1677, 1793, 3167
BfoI RGCGCY 2 cut(s) 782, 2054
BfuAI ACCTGC 4 cut(s) 316, 859, 2248, 3252
BfuI GTATCC 2 cut(s) 1654, 2949
BlnI CCTAGG 1 cut(s) 32
BmcAI AGTACT 3 cut(s) 1140, 1996, 2399
Bme18I GGWCC 8 cut(s) 491, 518, 530, 632, 797, 1124, 1514, 1724
BmeT110I CYCGRG 1 cut(s) 250
BmgBI CACGTC 1 cut(s) 2682
BmiI GGNNCC 8 cut(s) 30, 66, 258, 346, 699, 1350, 2106, 3328
BmrI ACTGGG 2 cut(s) 1227, 2197
BmsI GCATC 7 cut(s) 1287, 1525, 1797, 2349, 2360, 2736, 2959
BmuI ACTGGG 2 cut(s) 1227, 2197
BoxI GACNNNNGTC 1 cut(s) 3315
BpiI GAAGAC 2 cut(s) 378, 3315
BpmI CTGGAG 3 cut(s) 6, 2019, 2105
Bpu10I CCTNAGC 1 cut(s) 1551
BpuEI CTTGAG 2 cut(s) 786, 3077
BpuMI CCSGG 5 cut(s) 251, 252, 299, 579, 921
Bsa29I ATCGAT 1 cut(s) 1638
BsaBI GATNNNNATC 1 cut(s) 1104
BsaHI GRCGYC 1 cut(s) 3129
BsaI GGTCTC 1 cut(s) 298
BsaWI WCCGGW 5 cut(s) 119, 601, 2249, 2846, 3004
BsaXI ACNNNNNCTCC 6 cut(s) 1057, 1087, 2244, 2274, 2793, 2823
Bse118I RCCGGY 1 cut(s) 601
Bse8I GATNNNNATC 1 cut(s) 1104
BseCI ATCGAT 1 cut(s) 1638
BseGI GGATG 6 cut(s) 203, 1302, 1336, 2235, 2509, 2952
BseJI GATNNNNATC 1 cut(s) 1104
BseMII CTCAG 9 cut(s) 110, 1335, 1542, 2088, 2244, 2295, 2523, 2654, 3170
BseRI GAGGAG 7 cut(s) 9, 150, 690, 693, 807, 810, 1833
BseSI GKGCMC 6 cut(s) 31, 67, 259, 564, 1250, 1792
BseYI CCCAGC 1 cut(s) 1082
BsgI GTGCAG 1 cut(s) 1980
Bsh1236I CGCG 2 cut(s) 1494, 2622
BshNI GGYRCC 4 cut(s) 28, 64, 256, 344
BshTI ACCGGT 1 cut(s) 601
BshVI ATCGAT 1 cut(s) 1638
BsiHKAI GWGCWC 5 cut(s) 712, 732, 754, 1250, 1792
BsiHKCI CYCGRG 1 cut(s) 250
BsiSI CCGG 9 cut(s) 120, 251, 299, 578, 602, 921, 2250, 2847, 3005
BslFI GGGAC 3 cut(s) 2673, 2793, 3303
BsmAI GTCTC 5 cut(s) 298, 1206, 1478, 1844, 2589
BsmFI GGGAC 3 cut(s) 2673, 2793, 3303
BsmI GAATGC 5 cut(s) 721, 1011, 1657, 2421, 3284
Bso31I GGTCTC 1 cut(s) 298
BsoBI CYCGRG 1 cut(s) 250
Bsp1407I TGTACA 1 cut(s) 1825
Bsp19I CCATGG 1 cut(s) 3322
BspCNI CTCAG 9 cut(s) 109, 1336, 1543, 2089, 2243, 2294, 2522, 2653, 3169
BspDI ATCGAT 1 cut(s) 1638
BspFNI CGCG 2 cut(s) 1494, 2622
BspHI TCATGA 1 cut(s) 1425
BspLI GGNNCC 8 cut(s) 30, 66, 258, 346, 699, 1350, 2106, 3328
BspMAI CTGCAG 4 cut(s) 313, 1681, 1797, 3171
BspMI ACCTGC 4 cut(s) 316, 859, 2248, 3252
BspPI GGATC 8 cut(s) 685, 769, 1094, 1601, 2288, 2897, 2998, 3266
BspQI GCTCTTC 2 cut(s) 958, 2071
BspT107I GGYRCC 4 cut(s) 28, 64, 256, 344
BspTNI GGTCTC 1 cut(s) 298
BsrBI CCGCTC 1 cut(s) 2878
BsrFI RCCGGY 1 cut(s) 601
BsrGI TGTACA 1 cut(s) 1825
BssAI RCCGGY 1 cut(s) 601
BssNI GRCGYC 1 cut(s) 3129
BssSI CACGAG 1 cut(s) 705
BssT1I CCWWGG 2 cut(s) 32, 3322
Bst2BI CACGAG 1 cut(s) 705
Bst4CI ACNGT 8 cut(s) 47, 846, 1570, 2456, 2548, 2767, 3074, 3120
Bst6I CTCTTC 2 cut(s) 958, 2071
BstACI GRCGYC 1 cut(s) 3129
BstAPI GCANNNNNTGC 4 cut(s) 263, 727, 749, 1676
BstAUI TGTACA 1 cut(s) 1825
BstC8I GCNNGC 8 cut(s) 152, 453, 809, 1188, 1448, 1617, 1684, 2664
BstDSI CCRYGG 2 cut(s) 2127, 3322
BstENI CCTNNNNNAGG 2 cut(s) 21, 513
BstF5I GGATG 6 cut(s) 203, 1302, 1336, 2235, 2509, 2952
BstFNI CGCG 2 cut(s) 1494, 2622
BstH2I RGCGCY 2 cut(s) 782, 2054
BstHHI GCGC 6 cut(s) 274, 451, 575, 781, 2053, 2624
BstMAI GTCTC 5 cut(s) 298, 1206, 1478, 1844, 2589
BstNSI RCATGY 3 cut(s) 130, 811, 3356
BstPAI GACNNNNGTC 1 cut(s) 3315
BstSFI CTRYAG 4 cut(s) 309, 1677, 1793, 3167
BstSLI GKGCMC 6 cut(s) 31, 67, 259, 564, 1250, 1792
BstUI CGCG 2 cut(s) 1494, 2622
BstV2I GAAGAC 2 cut(s) 378, 3315
BstX2I RGATCY 4 cut(s) 677, 761, 2990, 3271
BstXI CCANNNNNNTGG 2 cut(s) 849, 2950
BstYI RGATCY 4 cut(s) 677, 761, 2990, 3271
Bsu15I ATCGAT 1 cut(s) 1638
BsuI GTATCC 2 cut(s) 1654, 2949
BsuTUI ATCGAT 1 cut(s) 1638
BtgI CCRYGG 2 cut(s) 2127, 3322
BtrI CACGTC 1 cut(s) 2682
BtsCI GGATG 6 cut(s) 203, 1302, 1336, 2235, 2509, 2952
BtsI GCAGTG 7 cut(s) 1019, 1269, 1501, 1693, 1790, 2361, 3135
BveI ACCTGC 4 cut(s) 316, 859, 2248, 3252
Cac8I GCNNGC 8 cut(s) 152, 453, 809, 1188, 1448, 1617, 1684, 2664
CciI TCATGA 1 cut(s) 1425
CfoI GCGC 6 cut(s) 274, 451, 575, 781, 2053, 2624
Cfr10I RCCGGY 1 cut(s) 601
Cfr9I CCCGGG 1 cut(s) 250
ClaI ATCGAT 1 cut(s) 1638
CseI GACGC 2 cut(s) 2170, 3118
CsiI ACCWGGT 1 cut(s) 259
Csp6I GTAC 9 cut(s) 1139, 1624, 1826, 1995, 2398, 2702, 2844, 2915, 3350
CspAI ACCGGT 1 cut(s) 601
CspCI CAANNNNNGTGG 4 cut(s) 675, 710, 1450, 1485
CviQI GTAC 9 cut(s) 1139, 1624, 1826, 1995, 2398, 2702, 2844, 2915, 3350
DraI TTTAAA 1 cut(s) 2142
DraIII CACNNNGTG 1 cut(s) 263
EaeI YGGCCR 4 cut(s) 214, 379, 851, 2554
Eam1104I CTCTTC 2 cut(s) 958, 2071
EarI CTCTTC 2 cut(s) 958, 2071
EciI GGCGGA 1 cut(s) 1173
Eco130I CCWWGG 2 cut(s) 32, 3322
Eco24I GRGCYC 1 cut(s) 2109
Eco31I GGTCTC 1 cut(s) 298
Eco47I GGWCC 8 cut(s) 491, 518, 530, 632, 797, 1124, 1514, 1724
Eco47III AGCGCT 1 cut(s) 2052
Eco57I CTGAAG 6 cut(s) 675, 1119, 1740, 2091, 2825, 3261
Eco88I CYCGRG 1 cut(s) 250
EcoNI CCTNNNNNAGG 2 cut(s) 21, 513
EcoO109I RGGNCCY 3 cut(s) 518, 797, 1724
EcoRI GAATTC 1 cut(s) 2565
EcoT14I CCWWGG 2 cut(s) 32, 3322
EcoT22I ATGCAT 1 cut(s) 723
EcoT38I GRGCYC 1 cut(s) 2109
ErhI CCWWGG 2 cut(s) 32, 3322
FaqI GGGAC 3 cut(s) 2673, 2793, 3303
FauI CCCGC 1 cut(s) 1499
FblI GTMKAC 1 cut(s) 2436
FokI GGATG 6 cut(s) 190, 1309, 1323, 2222, 2516, 2959
FriOI GRGCYC 1 cut(s) 2109
GlaI GCGC 6 cut(s) 273, 450, 574, 780, 2052, 2623
GsaI CCCAGC 1 cut(s) 1086
GsuI CTGGAG 3 cut(s) 6, 2019, 2105
HaeII RGCGCY 2 cut(s) 782, 2054
HapII CCGG 9 cut(s) 120, 251, 299, 578, 602, 921, 2250, 2847, 3005
HgaI GACGC 2 cut(s) 2170, 3118
HhaI GCGC 6 cut(s) 274, 451, 575, 781, 2053, 2624
Hin1I GRCGYC 1 cut(s) 3129
Hin6I GCGC 6 cut(s) 272, 449, 573, 779, 2051, 2622
HinP1I GCGC 6 cut(s) 272, 449, 573, 779, 2051, 2622
HincII GTYRAC 2 cut(s) 1886, 2437
HindII GTYRAC 2 cut(s) 1886, 2437
HinfI GANTC 8 cut(s) 110, 139, 1486, 1757, 1946, 3010, 3101, 3316
HpaII CCGG 9 cut(s) 120, 251, 299, 578, 602, 921, 2250, 2847, 3005
HphI GGTGA 8 cut(s) 231, 381, 675, 1385, 2996, 3019, 3077, 3124
Hpy99I CGWCG 1 cut(s) 2186
HpyAV CCTTC 8 cut(s) 238, 519, 1340, 1715, 2066, 2095, 2287, 3285
HpyCH4III ACNGT 8 cut(s) 47, 846, 1570, 2456, 2548, 2767, 3074, 3120
HpyCH4IV ACGT 6 cut(s) 1234, 1528, 1786, 2681, 3030, 3084
HpySE526I ACGT 6 cut(s) 1234, 1528, 1786, 2681, 3030, 3084
Hsp92I GRCGYC 1 cut(s) 3129
HspAI GCGC 6 cut(s) 272, 449, 573, 779, 2051, 2622
LguI GCTCTTC 2 cut(s) 958, 2071
LweI GCATC 7 cut(s) 1287, 1525, 1797, 2349, 2360, 2736, 2959
MabI ACCWGGT 1 cut(s) 259
MaeII ACGT 6 cut(s) 1234, 1528, 1786, 2681, 3030, 3084
MaeIII GTNAC 8 cut(s) 47, 122, 1235, 2329, 2456, 2473, 2651, 3130
MbiI CCGCTC 1 cut(s) 2878
MfeI CAATTG 2 cut(s) 1898, 2154
MflI RGATCY 4 cut(s) 677, 761, 2990, 3271
MlsI TGGCCA 4 cut(s) 216, 381, 853, 2556
MluNI TGGCCA 4 cut(s) 216, 381, 853, 2556
MlyI GAGTC 3 cut(s) 1480, 1751, 3325
MmeI TCCRAC 6 cut(s) 518, 655, 671, 737, 1940, 2450
Mox20I TGGCCA 4 cut(s) 216, 381, 853, 2556
Mph1103I ATGCAT 1 cut(s) 723
MroXI GAANNNNTTC 2 cut(s) 1911, 3030
MscI TGGCCA 4 cut(s) 216, 381, 853, 2556
MseI TTAA 5 cut(s) 144, 2141, 2480, 2834, 3077
MslI CAYNNNNRTG 4 cut(s) 847, 2546, 2600, 3033
Msp20I TGGCCA 4 cut(s) 216, 381, 853, 2556
MspA1I CMGCKG 1 cut(s) 1619
MspI CCGG 9 cut(s) 120, 251, 299, 578, 602, 921, 2250, 2847, 3005
MunI CAATTG 2 cut(s) 1898, 2154
Mva1269I GAATGC 5 cut(s) 721, 1011, 1657, 2421, 3284
MvnI CGCG 2 cut(s) 1494, 2622
NciI CCSGG 5 cut(s) 251, 252, 299, 579, 921
NcoI CCATGG 1 cut(s) 3322
NlaIV GGNNCC 8 cut(s) 30, 66, 258, 346, 699, 1350, 2106, 3328
NmeAIII GCCGAG 2 cut(s) 262, 1096
NmuCI GTSAC 3 cut(s) 2329, 2456, 3130
NsiI ATGCAT 1 cut(s) 723
NspI RCATGY 3 cut(s) 130, 811, 3356
OliI CACNNNNGTG 2 cut(s) 2546, 3033
PaeI GCATGC 1 cut(s) 811
PagI TCATGA 1 cut(s) 1425
PaqCI CACCTGC 1 cut(s) 859
PciI ACATGT 1 cut(s) 3352
PciSI GCTCTTC 2 cut(s) 958, 2071
PcsI WCGNNNNNNNCGW 1 cut(s) 1396
PctI GAATGC 5 cut(s) 721, 1011, 1657, 2421, 3284
PdmI GAANNNNTTC 2 cut(s) 1911, 3030
PfeI GAWTC 5 cut(s) 110, 139, 1946, 3010, 3101
PflMI CCANNNNNTGG 4 cut(s) 377, 674, 2039, 2128
PinAI ACCGGT 1 cut(s) 601
PleI GAGTC 3 cut(s) 1480, 1751, 3324
PpsI GAGTC 3 cut(s) 1480, 1751, 3324
PpuMI RGGWCCY 3 cut(s) 518, 797, 1724
PscI ACATGT 1 cut(s) 3352
PshAI GACNNNNGTC 1 cut(s) 3315
PshBI ATTAAT 1 cut(s) 2834
Psp5II RGGWCCY 3 cut(s) 518, 797, 1724
PspFI CCCAGC 1 cut(s) 1082
PspN4I GGNNCC 8 cut(s) 30, 66, 258, 346, 699, 1350, 2106, 3328
PspPPI RGGWCCY 3 cut(s) 518, 797, 1724
PstI CTGCAG 4 cut(s) 313, 1681, 1797, 3171
PsuI RGATCY 4 cut(s) 677, 761, 2990, 3271
PvuII CAGCTG 1 cut(s) 1619
RsaI GTAC 9 cut(s) 1140, 1625, 1827, 1996, 2399, 2703, 2845, 2916, 3351
RsaNI GTAC 9 cut(s) 1139, 1624, 1826, 1995, 2398, 2702, 2844, 2915, 3350
RseI CAYNNNNRTG 4 cut(s) 847, 2546, 2600, 3033
SalI GTCGAC 1 cut(s) 2435
SapI GCTCTTC 2 cut(s) 958, 2071
SaqAI TTAA 5 cut(s) 144, 2141, 2480, 2834, 3077
ScaI AGTACT 3 cut(s) 1140, 1996, 2399
SchI GAGTC 3 cut(s) 1480, 1751, 3325
SexAI ACCWGGT 1 cut(s) 259
SfaNI GCATC 7 cut(s) 1287, 1525, 1797, 2349, 2360, 2736, 2959
SfcI CTRYAG 4 cut(s) 309, 1677, 1793, 3167
SinI GGWCC 8 cut(s) 491, 518, 530, 632, 797, 1124, 1514, 1724
SmaI CCCGGG 1 cut(s) 252
SmiMI CAYNNNNRTG 4 cut(s) 847, 2546, 2600, 3033
SmlI CTYRAG 2 cut(s) 801, 3056
SmoI CTYRAG 2 cut(s) 801, 3056
SpeI ACTAGT 1 cut(s) 2597
SphI GCATGC 1 cut(s) 811
StyI CCWWGG 2 cut(s) 32, 3322
TaaI ACNGT 8 cut(s) 47, 846, 1570, 2456, 2548, 2767, 3074, 3120
TaiI ACGT 6 cut(s) 1237, 1531, 1789, 2684, 3033, 3087
TaqI TCGA 5 cut(s) 1390, 1638, 1760, 2184, 2436
TatI WGTACW 5 cut(s) 1138, 1623, 1825, 1994, 2397
TauI GCSGC 7 cut(s) 226, 353, 784, 814, 2341, 2669, 3228
TfiI GAWTC 5 cut(s) 110, 139, 1946, 3010, 3101
Tru1I TTAA 5 cut(s) 144, 2141, 2480, 2834, 3077
Tru9I TTAA 5 cut(s) 144, 2141, 2480, 2834, 3077
TseFI GTSAC 3 cut(s) 2329, 2456, 3130
Tsp45I GTSAC 3 cut(s) 2329, 2456, 3130
TspGWI ACGGA 1 cut(s) 2575
TspMI CCCGGG 1 cut(s) 250
Van91I CCANNNNNTGG 4 cut(s) 377, 674, 2039, 2128
VneI GTGCAC 2 cut(s) 1246, 1788
VpaK11BI GGWCC 8 cut(s) 491, 518, 530, 632, 797, 1124, 1514, 1724
VspI ATTAAT 1 cut(s) 2834
XagI CCTNNNNNAGG 2 cut(s) 21, 513
XapI RAATTY 8 cut(s) 133, 655, 1110, 1574, 2159, 2565, 2753, 3108
XbaI TCTAGA 2 cut(s) 401, 1846
XceI RCATGY 3 cut(s) 130, 811, 3356
XcmI CCANNNNNNNNNTGG 1 cut(s) 3320
XmaI CCCGGG 1 cut(s) 250
XmaJI CCTAGG 1 cut(s) 32
XmiI GTMKAC 1 cut(s) 2436
XmnI GAANNNNTTC 2 cut(s) 1911, 3030
ZrmI AGTACT 3 cut(s) 1140, 1996, 2399
Zsp2I ATGCAT 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.