pycom15g24480

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000554
Physical Location & Seq
Forward (+)
18666650 .. 18669354
2705 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g24480.5

Sequence Viewer

Length: 735 bp
ATGATTGTGTCGAGGGTTTACTATTATCACCCCTTCTCAGCTGTCTCTGATCCTGCAAACCTCTACAATGATCTTAGATGGAATGTCACAAGACCTCAAGGTCTTGAGGGGGTGATGCGTGTAAGATGTAGCCAGGGTATTCAAGTTCAAGAGTACCATGGGAGCTTTTGCAAACGTATCCGTACAGATGTTGACGTACCTGGGTGTGCCCTTTTATACACAACTGTGTATGGTCAACGGAGAATTCGAGTTACAACTTTGTCTCTGCCATGCACGAGTATGCTAAATAATCTGTTTCGTGCTGCTGATTTGGACACTCAGTTTGCGTGTTTCATGAAGCAAGCGGCAAACGAAATTGCTTCAAGTGCTCTCTTGTGTGTACGGGAACAAGTGACAAATCTGTGCATCAGTAGTCTGCTTTCATATCGTAAATTTTGTGCTACTGTATCATCTTCTGGACAGCTTATTCTTCCGGAGGCACTGAAGCTCCTGCCTCTATACACCCTTGCATTAATCAAAAGTACGGGGCTACGAAGTGATGGAAAAATAGATGAGCGGTCCTTCTGGATCAATCATGTGTCTTCCCTTTCTGTTCCTTTGGCAGTTCCACTGGTGCACCCCAGAATGGTGGCTATTGATGATCTCGAATCCAAAAAGGAGGGTGATGAATCTCTAATTCCTCCAGTGATTCCACTTTCTAGCGAACACGTGAGTGACAAGGGAATTATCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

245

Amino Acids

27.2

Weight (kDa)

8.4

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000554)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT4G32640 AT4G32640
fragaria_vesca FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000
malus_domestica MD02G1169200.v1.1 MD13G1230500.v1.1 MD15G1281700.v1.1 MD16G1009900.v1.1 MD16G1235300.v1.1
prunus_persica Prupe.1G056500_v2.0.a1 Prupe.1G056500_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1
pyrus_communis pycom02g13590 pycom13g20290 pycom15g24480 pycom16g00970 pycom16g19630
rosa_chinensis RchiOBHm_Chr4g0396591 RchiOBHm_Chr4g0445631
rosa_laevigata RLG00000005723 RLG00000009518
rosa_multiflora Rmu_co8031254.1_g000001 Rmu_co8351119.1_g000001 Rmu_sc0003637.1_g000024 Rmu_sc0010969.1_g000001 Rmu_sc0019383.1_g000002
rosa_roxburghii Rroxscaffold_5G00341440 Rroxscaffold_5G00386110
rosa_rugosa Rorug03G0348600 Rorug03G0348700 Rorug04G0363200 Rorug04G0363300 Rorug04G0363400 Rorug04G0363500
rosa_samantha Rh4AG070600 Rh4AG424700 Rh4AG425100 Rh4BG068500 Rh4BG436900 Rh4CG076300 Rh4CG451400 Rh4DG065600 Rh4DG433400
rosa_wichuraiana Rw4G005630 Rw4G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 99
AccBSI CCGCTC 1 cut(s) 556
AccIII TCCGGA 1 cut(s) 472
AciI CCGC 2 cut(s) 344, 556
AclWI GGATC 2 cut(s) 44, 575
AcsI RAATTY 2 cut(s) 243, 431
AcuI CTGAAG 1 cut(s) 503
AcvI CACGTG 1 cut(s) 709
AfaI GTAC 5 cut(s) 155, 184, 198, 381, 523
AfiI CCNNNNNNNGG 1 cut(s) 625
AflIII ACRYGT 1 cut(s) 706
AgsI TTSAA 3 cut(s) 143, 149, 363
AjnI CCWGG 2 cut(s) 132, 199
AleI CACNNNNGTG 2 cut(s) 224, 711
AluBI AGCT 4 cut(s) 41, 165, 463, 487
AluI AGCT 4 cut(s) 41, 165, 463, 487
Alw21I GWGCWC 2 cut(s) 370, 618
Alw26I GTCTC 2 cut(s) 49, 267
Alw44I GTGCAC 1 cut(s) 614
AlwI GGATC 2 cut(s) 44, 575
Aor13HI TCCGGA 1 cut(s) 472
ApaLI GTGCAC 1 cut(s) 614
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 2 cut(s) 243, 431
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AseI ATTAAT 1 cut(s) 512
AspS9I GGNCC 1 cut(s) 558
AsuHPI GGTGA 3 cut(s) 20, 124, 674
AvaII GGWCC 1 cut(s) 558
BaeGI GKGCMC 2 cut(s) 211, 618
BauI CACGAG 1 cut(s) 274
BbrPI CACGTG 1 cut(s) 709
BbsI GAAGAC 1 cut(s) 573
Bbv12I GWGCWC 2 cut(s) 370, 618
BbvI GCAGC 1 cut(s) 289
BccI CCATC 2 cut(s) 72, 533
BciT130I CCWGG 2 cut(s) 134, 201
BciVI GTATCC 1 cut(s) 188
BcoDI GTCTC 2 cut(s) 49, 267
BfaI CTAG 2 cut(s) 699, 733
BfuI GTATCC 1 cut(s) 188
BisI GCNGC 2 cut(s) 303, 345
BlsI GCNGC 2 cut(s) 304, 346
Bme1390I CCNGG 2 cut(s) 134, 201
Bme18I GGWCC 1 cut(s) 558
BmgT120I GGNCC 1 cut(s) 558
BmrFI CCNGG 2 cut(s) 134, 201
BmsI GCATC 2 cut(s) 105, 414
BpiI GAAGAC 1 cut(s) 573
BpmI CTGGAG 1 cut(s) 666
BpuEI CTTGAG 2 cut(s) 81, 125
BsaAI YACGTR 1 cut(s) 709
BsaJI CCNNGG 3 cut(s) 133, 157, 200
BsaWI WCCGGW 1 cut(s) 472
BsaXI ACNNNNNCTCC 2 cut(s) 471, 501
Bsc4I CCNNNNNNNGG 1 cut(s) 625
Bse1I ACTGG 2 cut(s) 615, 683
BseAI TCCGGA 1 cut(s) 472
BseBI CCWGG 2 cut(s) 134, 201
BseDI CCNNGG 3 cut(s) 133, 157, 200
BseLI CCNNNNNNNGG 1 cut(s) 625
BseMII CTCAG 2 cut(s) 51, 332
BseNI ACTGG 2 cut(s) 615, 683
BseSI GKGCMC 2 cut(s) 211, 618
BseXI GCAGC 1 cut(s) 289
BsiHKAI GWGCWC 2 cut(s) 370, 618
BsiSI CCGG 1 cut(s) 473
BslI CCNNNNNNNGG 1 cut(s) 625
BsmAI GTCTC 2 cut(s) 49, 267
Bsp1286I GDGCHC 3 cut(s) 211, 370, 618
Bsp13I TCCGGA 1 cut(s) 472
Bsp143I GATC 4 cut(s) 49, 70, 567, 640
Bsp19I CCATGG 1 cut(s) 157
BspACI CCGC 2 cut(s) 344, 556
BspCNI CTCAG 2 cut(s) 50, 331
BspEI TCCGGA 1 cut(s) 472
BspHI TCATGA 1 cut(s) 333
BspPI GGATC 2 cut(s) 44, 575
BsrBI CCGCTC 1 cut(s) 556
BsrI ACTGG 2 cut(s) 615, 683
BssECI CCNNGG 3 cut(s) 133, 157, 200
BssMI GATC 4 cut(s) 49, 70, 567, 640
BssSI CACGAG 1 cut(s) 274
BssT1I CCWWGG 1 cut(s) 157
Bst2BI CACGAG 1 cut(s) 274
Bst2UI CCWGG 2 cut(s) 134, 201
Bst4CI ACNGT 2 cut(s) 226, 445
BstBAI YACGTR 1 cut(s) 709
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 3 cut(s) 37, 74, 318
BstDSI CCRYGG 1 cut(s) 157
BstKTI GATC 4 cut(s) 52, 73, 570, 643
BstMAI GTCTC 2 cut(s) 49, 267
BstMBI GATC 4 cut(s) 49, 70, 567, 640
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstNI CCWGG 2 cut(s) 134, 201
BstSCI CCNGG 2 cut(s) 132, 199
BstSLI GKGCMC 2 cut(s) 211, 618
BstV1I GCAGC 1 cut(s) 289
BstV2I GAAGAC 1 cut(s) 573
BstXI CCANNNNNNTGG 1 cut(s) 628
BsuI GTATCC 1 cut(s) 188
BtgI CCRYGG 1 cut(s) 157
BtsIMutI CAGTG 3 cut(s) 479, 608, 690
Cac8I GCNNGC 1 cut(s) 342
CciI TCATGA 1 cut(s) 333
Cfr13I GGNCC 1 cut(s) 558
Csp6I GTAC 5 cut(s) 154, 183, 197, 380, 522
CviAII CATG 4 cut(s) 158, 270, 334, 575
CviJI RGCY 7 cut(s) 41, 132, 165, 463, 487, 529, 632
CviKI_1 RGCY 7 cut(s) 41, 132, 165, 463, 487, 529, 632
CviQI GTAC 5 cut(s) 154, 183, 197, 380, 522
DdeI CTNAG 3 cut(s) 37, 74, 318
DpnI GATC 4 cut(s) 51, 72, 569, 642
DpnII GATC 4 cut(s) 49, 70, 567, 640
DrdI GACNNNNNNGTC 1 cut(s) 99
DseDI GACNNNNNNGTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 558
Eco57I CTGAAG 1 cut(s) 503
Eco72I CACGTG 1 cut(s) 709
EcoRI GAATTC 1 cut(s) 243
EcoRII CCWGG 2 cut(s) 132, 199
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 4 cut(s) 161, 273, 337, 578
FaiI YATR 9 cut(s) 159, 217, 231, 271, 281, 335, 424, 499, 576
FatI CATG 4 cut(s) 157, 269, 333, 574
Fnu4HI GCNGC 2 cut(s) 303, 345
Fsp4HI GCNGC 2 cut(s) 303, 345
FspBI CTAG 2 cut(s) 699, 733
GluI GCNGC 2 cut(s) 303, 345
GsuI CTGGAG 1 cut(s) 666
HapII CCGG 1 cut(s) 473
Hin1II CATG 4 cut(s) 161, 273, 337, 578
HincII GTYRAC 2 cut(s) 193, 236
HindII GTYRAC 2 cut(s) 193, 236
HinfI GANTC 3 cut(s) 647, 668, 688
HpaII CCGG 1 cut(s) 473
HphI GGTGA 3 cut(s) 20, 124, 674
Hpy166II GTNNAC 5 cut(s) 19, 193, 236, 380, 616
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 7 cut(s) 104, 149, 334, 456, 473, 565, 644
Hpy8I GTNNAC 5 cut(s) 19, 193, 236, 380, 616
HpyAV CCTTC 2 cut(s) 43, 571
HpyCH4III ACNGT 2 cut(s) 226, 445
HpyCH4IV ACGT 3 cut(s) 175, 195, 708
HpyCH4V TGCA 6 cut(s) 56, 171, 273, 405, 509, 616
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 3 cut(s) 37, 74, 318
HpySE526I ACGT 3 cut(s) 175, 195, 708
Hsp92II CATG 4 cut(s) 161, 273, 337, 578
Kpn2I TCCGGA 1 cut(s) 472
Kzo9I GATC 4 cut(s) 49, 70, 567, 640
LmnI GCTCC 2 cut(s) 162, 492
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 2 cut(s) 105, 414
MaeI CTAG 2 cut(s) 699, 733
MaeII ACGT 3 cut(s) 175, 195, 708
MaeIII GTNAC 4 cut(s) 85, 250, 391, 713
MalI GATC 4 cut(s) 51, 72, 569, 642
MbiI CCGCTC 1 cut(s) 556
MboI GATC 4 cut(s) 49, 70, 567, 640
MboII GAAGA 4 cut(s) 444, 461, 573, 721
MhlI GDGCHC 3 cut(s) 211, 370, 618
MluCI AATT 5 cut(s) 243, 354, 431, 675, 723
MnlI CCTC 8 cut(s) 6, 71, 100, 105, 469, 504, 652, 690
MroI TCCGGA 1 cut(s) 472
MseI TTAA 1 cut(s) 512
MslI CAYNNNNRTG 3 cut(s) 224, 278, 711
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 1 cut(s) 473
MspR9I CCNGG 2 cut(s) 134, 201
MvaI CCWGG 2 cut(s) 134, 201
MwoI GCNNNNNNNGC 1 cut(s) 365
NcoI CCATGG 1 cut(s) 157
NdeII GATC 4 cut(s) 49, 70, 567, 640
NlaIII CATG 4 cut(s) 161, 273, 337, 578
NmuCI GTSAC 3 cut(s) 85, 391, 713
OliI CACNNNNGTG 2 cut(s) 224, 711
PagI TCATGA 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 244
PfeI GAWTC 3 cut(s) 647, 668, 688
PkrI GCNGC 2 cut(s) 304, 346
PmaCI CACGTG 1 cut(s) 709
PmlI CACGTG 1 cut(s) 709
Ppu21I YACGTR 1 cut(s) 709
PshBI ATTAAT 1 cut(s) 512
Psp6I CCWGG 2 cut(s) 132, 199
PspCI CACGTG 1 cut(s) 709
PspGI CCWGG 2 cut(s) 132, 199
PspPI GGNCC 1 cut(s) 558
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 5 cut(s) 155, 184, 198, 381, 523
RsaNI GTAC 5 cut(s) 154, 183, 197, 380, 522
RseI CAYNNNNRTG 3 cut(s) 224, 278, 711
SaqAI TTAA 1 cut(s) 512
SatI GCNGC 2 cut(s) 303, 345
Sau3AI GATC 4 cut(s) 49, 70, 567, 640
Sau96I GGNCC 1 cut(s) 558
ScrFI CCNGG 2 cut(s) 134, 201
SduI GDGCHC 3 cut(s) 211, 370, 618
SfaNI GCATC 2 cut(s) 105, 414
SinI GGWCC 1 cut(s) 558
SmiMI CAYNNNNRTG 3 cut(s) 224, 278, 711
SmlI CTYRAG 2 cut(s) 96, 104
SmoI CTYRAG 2 cut(s) 96, 104
Sse9I AATT 5 cut(s) 243, 354, 431, 675, 723
SsiI CCGC 2 cut(s) 344, 556
SspMI CTAG 2 cut(s) 699, 733
StyD4I CCNGG 2 cut(s) 132, 199
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 2 cut(s) 226, 445
TaiI ACGT 3 cut(s) 178, 198, 711
TaqI TCGA 3 cut(s) 11, 247, 645
TasI AATT 5 cut(s) 243, 354, 431, 675, 723
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 3 cut(s) 647, 668, 688
Tru1I TTAA 1 cut(s) 512
Tru9I TTAA 1 cut(s) 512
TscAI CASTG 3 cut(s) 486, 615, 690
TseFI GTSAC 3 cut(s) 85, 391, 713
TseI GCWGC 1 cut(s) 302
Tsp45I GTSAC 3 cut(s) 85, 391, 713
TspDTI ATGAA 4 cut(s) 322, 350, 411, 681
TspGWI ACGGA 2 cut(s) 170, 253
TspRI CASTG 3 cut(s) 486, 615, 690
VneI GTGCAC 1 cut(s) 614
VpaK11BI GGWCC 1 cut(s) 558
VspI ATTAAT 1 cut(s) 512
XapI RAATTY 2 cut(s) 243, 431
XspI CTAG 2 cut(s) 699, 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.