Rroxscaffold_5G00341440

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000554
Physical Location & Seq
Reverse (-)
9958249 .. 9973060
14812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00341440.1

Sequence Viewer

Length: 3402 bp
ATGGCAGCTTTTGTGCCTCCTCCAGGGGCACCTAGGCCCAATAACAGTAACACTCCACCAGGGGCACCACCCCCAAATTACAACCCTAACAATGCTCAGAGAAACCCTGATTCGTTATCCGGTAACATGCAGAATTTGAATCTTAATCGCCAGCAGCCTCCTCCCATGCCCAATTCTGCTCCTAGACCATCATCATCATCATCATCATCATCCCCTTTTGGCCAACCGCCGCCCTTCCAGTCATCACCGCCTCCCCCGGGGGCACCTGGTGCTTCTGCGCCTTATTCTCGGCCTGGCCCTCCCCCGGCGAGGCCTGCAGCACCCCGTCCACAAGCAACATTACCCCCTGGCACCGCTGCAGTAAGACCTACTGGCCCACCTGTTGGCCAGTCTTCACCGTTTGGGTCTAGACCGCCTCCTGGGGCTTTTCCTCCTGGGGTAGCTCCTACTTCTGCGCCAACTTCCAGTCCTTTCCAGACAACGGGTTTGCCAAGTGGTCCAGGTTCAATGCCACCACCGCCTTCATCAGGTCCTCGCCCTGGTCCTGGGCCGTTCGCTAGTGGTCAGGCTGTGCCCCCTATGGGCGCACCGGGTAGAATGAGTAATGGGCCACCAGTCTTTGGTTCCGGGGCTTTGCCAGGTGGACCTCGTTTTCCTTCAACTGGAAATTTACCTCAACCACCTGTTGGATCTTCACCAACTTCAGTGGCTCCTCCTCGTGCTCCAACCATGCATTCGGTGCTCGGTGGTCCCGCAGTCGGTGCTCCACCAGGATCTACTGCCCAACAAGCACCGCCGTTTTCGTCAGGTCCTCAAGGCATGCGGCCTCCTCCTCCTGGTTCTCCTTATAGCCCACAGTCATGGCCAATGCAACAAGGGCAGGTGGCTCAACCTCCACAATTTCCTGGGTCTGCTCCACCTCCACAATTTCCTGGGTCTGCTCCACCCGCACAATTTCCTGGATCTTCTCCACCTCCACAGTTTCCGGGCTCTGCTCAACCACCTAGAATGTATGGAATGCCACCACAACCACTGCCAAATCAGTCCATGACTACCATCTCATCGGCTGTTGGTCAAACTGGAACTCCTATGGCTGGGTCATCAAAGATTGATCCCAATCAAATTCCTCGGCCTGGACCAAGTTCTTCAGTACTTCTGCATGAAACTCGTCAGGCCAATCAAGCAAATCCACCTCCGCCTGCTACAAGTGATTATATCGTCAGAGACACTGGGAATTGCAGTCCACGTTACATGAGGTGCACCATCAATCAGATACCATGCACTGCTGATCTTTTGACAACATCAGGGATGCCGTTAGCTTTGTTGGTTGAACCTTTTGCCCTTCCTCATCCATCTGAGGAACCAATCCAAGTTGTAGATTTTGGTGAAAGTGGCCCTGTTCGATGTTCTCGTTGCAAAGGCTACATAAATCCTTTCATGAGGTTCATAGACCAGGGCAGGCAATTCATCTGCAATTTGTGTGGATTTACTGATGAGACTCCCCGCGACTACCACTGCAATCTAGGTCCAGATGGCAGACGTAGAGATGCTGATGATCGGCCTGAGCTATGTAGGGGAACAGTTGAATTTGTTGCCTCAAAAGAATACATGGTGCGTGATCCCATGCCAGCTGTGTACTTCTTCCTTATCGATGTATCCATGAATGCCATTCAAACTGGTGCAACTGCTGCAGCTTGCAGTGCAATCAATCAAGTTATTGCTGATCTTCCTGAAGGTCCTCGGACAAGGGTGGGGATAGCAACATTTGACTCGACAATCCATTTTTACAATTTGAAACGTGCACTGCAGCAGCCTTTGATGCTTATTGTTCCTGATGTACAAGATGTTTACACTCCTCTAGAGACTGATGTAGTTGTTCAGCTTTCCGAGTGCCGTCAACATTTGGAGCAATTACTGGAAAGTATTCCAACTATGTTTCAGAATAGTAGAACTGCTGAATCAGCTTTTGGTGCAGCAATCAAGGCTGCTTTCTTGGCAATAAAGAGTACTGGAGGGAAACTTTTGGTGTTTCAGTCAGTGTTGCCATCAACTGGAATTGGAGCGCTTTCAGCTAGAGAGGCTGAAGGAAGAGCTAATATATCTTCAACTGAGAAGGAACCCAATAAATTACTCCAGCCCGTGGACAAAACTTTAAAGACATTGGCAATTGAATTTGCTGAATATCAGGTTTGCGTCGATTTATTTATCACTACCCAGTCATACATAGATATTGCTTCTATCTCAGTCATCCCCAGAACAACAGGAGGGCAGGTTTACTATTATTATCCCTTCTCAGCTCTCTCTGATCCTGCAAAGCTATATAATGATCTTAGATGGAATGTCACAAGGCCGCAAGGTTTTGAGGCAGTGATGCGTGTAAGATGCAGCCAGGGTATTCAAGTTCAAGAGTACTTCGGAAACTTTTGCAAACGCATTCCAACAGATGTAGACCTACCTGGGATTGACTGTGACAAAACTATTATGGTAACGTTAAAGCATGATGACAAATTACAGGATGGATCAGAATGTTCTTTCCAGTGTGCTGTTTTATATACGACTGTGTATGGCGAACGGAGAATTCGGGTTACCACTTTGTCTCTGCCATGCACTAGTATGCTAAGTAATCTGTTTCGCGCTGCTGATTTGGACACTCAGTTTTCATGTTACATGAAGCAAGCGGCAAATGAAATCACGTCAAGTCCCCTCTTGCGTGTACGGGAACAAATGACAAATCTTTGCATCAGTAGTCTGCTTTCATACCGCAAATTCTGTGCTACTGTATCATCTTCGGGACAGCTTATTCTTCCAGAGGCACTGAAGCTCCTGCCTCTATACACCCTTGCATTAATCAAAAGTACCGGACTACGAACTGATGGAAAAATTGATGAGCGGTCTTTTTGGATCAACCATGTTTCCTCTCTATCTGTACCTTTGGCAGTTCCACTGGTGTATCCCAGGATGGTGGCTGTCCATAACCTTGATGCTAAAAAGGAGGGTGATGGATCTGTTATTCCTCCGGTGATTCCACTTTCTGGTGAACACGTTAGTGATGATGGAATATATCTTCTTGAGAATGGTGAGGACTGTTTAATATACGTTGGGAACTCGGTGGATTCTGGAATTTTACAACAGCTGTTTGGCGTCACCACTACTGATGAACTTCCTACTCAGTTTGTGCTGCAGCAGTATGATAATTCAATATCAAAGAAGCTGAATGATGTGGTAAATGAAATACGCCGCCAGAGATGTTCCTACCTGCGATTGAAATTGTGCAAGAAAGGAGATCCTTCAGGAGCATTCTTCTTATCACATTTGGTTGAAGACCAGAGTCCCCATGGCCCCTCCTATGTTGAGTTTCTGGTACATGTCCATCGGCAAATACAGATAAAAATGACTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

1133

Amino Acids

121.31

Weight (kDa)

8.07

Isoelectric Point (pI)

56.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Sec23_Sec24 PF04810 466 - 504 3.4e-16 Sec23/Sec24 zinc finger
Sec23_trunk PF04811 541 - 781 1.6e-80 Sec23/Sec24 trunk domain
Sec23_BS PF08033 786 - 870 1.7e-27 Sec23/Sec24 beta-sandwich domain
Sec23_helical PF04815 881 - 979 1.3e-24 Sec23/Sec24 helical domain
Gelsolin PF00626 1002 - 1070 1.9e-07 Gelsolin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000554)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT3G44340 AT4G32640 AT4G32640
fragaria_vesca FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g05490 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000 FvH4_4g36000
malus_domestica MD02G1169200.v1.1 MD13G1230500.v1.1 MD15G1281700.v1.1 MD16G1009900.v1.1 MD16G1235300.v1.1
prunus_persica Prupe.1G056500_v2.0.a1 Prupe.1G056500_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1 Prupe.1G340700_v2.0.a1
pyrus_communis pycom02g13590 pycom13g20290 pycom15g24480 pycom16g00970 pycom16g19630
rosa_chinensis RchiOBHm_Chr4g0396591 RchiOBHm_Chr4g0445631
rosa_laevigata RLG00000005723 RLG00000009518
rosa_multiflora Rmu_co8031254.1_g000001 Rmu_co8351119.1_g000001 Rmu_sc0003637.1_g000024 Rmu_sc0010969.1_g000001 Rmu_sc0019383.1_g000002
rosa_roxburghii Rroxscaffold_5G00341440 Rroxscaffold_5G00386110
rosa_rugosa Rorug03G0348600 Rorug03G0348700 Rorug04G0363200 Rorug04G0363300 Rorug04G0363400 Rorug04G0363500
rosa_samantha Rh4AG070600 Rh4AG424700 Rh4AG425100 Rh4BG068500 Rh4BG436900 Rh4CG076300 Rh4CG451400 Rh4DG065600 Rh4DG433400
rosa_wichuraiana Rw4G005630 Rw4G036410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 871
Acc36I ACCTGC 3 cut(s) 871, 2260, 3264
AccB1I GGYRCC 4 cut(s) 28, 64, 262, 350
AccB7I CCANNNNNTGG 6 cut(s) 383, 620, 686, 2051, 2140, 3032
AccBSI CCGCTC 1 cut(s) 2890
AccI GTMKAC 1 cut(s) 2448
AccII CGCG 2 cut(s) 1506, 2634
AclI AACGTT 1 cut(s) 2489
AcoI YGGCCR 3 cut(s) 220, 385, 863
AcsI RAATTY 8 cut(s) 133, 667, 1122, 1586, 2171, 2577, 2765, 3120
AcuI CTGAAG 6 cut(s) 687, 1131, 1752, 2103, 2837, 3273
AcyI GRCGYC 1 cut(s) 3141
AdeI CACNNNGTG 1 cut(s) 269
AfaI GTAC 9 cut(s) 1152, 1637, 1839, 2008, 2411, 2715, 2857, 2928, 3363
AfeI AGCGCT 1 cut(s) 2064
AflIII ACRYGT 2 cut(s) 3040, 3364
AhlI ACTAGT 1 cut(s) 2609
AjiI CACGTC 1 cut(s) 2694
AjuI GAANNNNNNNTTGG 4 cut(s) 718, 750, 1950, 1982
AleI CACNNNNGTG 1 cut(s) 3045
Alw21I GWGCWC 5 cut(s) 724, 744, 766, 1262, 1804
Alw26I GTCTC 4 cut(s) 1218, 1490, 1856, 2601
Alw44I GTGCAC 2 cut(s) 1258, 1800
Ama87I CYCGRG 1 cut(s) 256
Aor51HI AGCGCT 1 cut(s) 2064
ApaLI GTGCAC 2 cut(s) 1258, 1800
ApoI RAATTY 8 cut(s) 133, 667, 1122, 1586, 2171, 2577, 2765, 3120
ArsI GACNNNNNNTTYG 2 cut(s) 469, 501
AseI ATTAAT 1 cut(s) 2846
Asp700I GAANNNNTTC 1 cut(s) 1923
AspA2I CCTAGG 1 cut(s) 32
AspLEI GCGC 5 cut(s) 280, 457, 587, 2065, 2636
AsuC2I CCSGG 6 cut(s) 257, 258, 305, 591, 628, 987
AsuHPI GGTGA 9 cut(s) 237, 387, 687, 1397, 3008, 3031, 3047, 3089, 3136
AvaI CYCGRG 1 cut(s) 256
AvaII GGWCC 9 cut(s) 497, 530, 542, 644, 749, 809, 1136, 1526, 1736
AvrII CCTAGG 1 cut(s) 32
BaeGI GKGCMC 6 cut(s) 31, 67, 265, 576, 1262, 1804
BaeI ACNNNNGTAYC 2 cut(s) 2933, 2966
BalI TGGCCA 3 cut(s) 222, 387, 865
BanI GGYRCC 4 cut(s) 28, 64, 262, 350
BanII GRGCYC 1 cut(s) 992
BauI CACGAG 1 cut(s) 717
BbsI GAAGAC 2 cut(s) 384, 3327
Bbv12I GWGCWC 5 cut(s) 724, 744, 766, 1262, 1804
BceAI ACGGC 4 cut(s) 535, 781, 1297, 1878
BcgI CGANNNNNNTGC 2 cut(s) 1148, 1182
BciVI GTATCC 2 cut(s) 1666, 2961
BcnI CCSGG 6 cut(s) 257, 258, 305, 591, 628, 987
BcoDI GTCTC 4 cut(s) 1218, 1490, 1856, 2601
BcuI ACTAGT 1 cut(s) 2609
BfaI CTAG 9 cut(s) 33, 183, 408, 558, 1005, 1523, 1859, 2073, 2610
BfmI CTRYAG 5 cut(s) 315, 357, 1689, 1805, 3179
BfoI RGCGCY 1 cut(s) 2066
BfuAI ACCTGC 3 cut(s) 871, 2260, 3264
BfuI GTATCC 2 cut(s) 1666, 2961
BlnI CCTAGG 1 cut(s) 32
BmcAI AGTACT 3 cut(s) 1152, 2008, 2411
Bme18I GGWCC 9 cut(s) 497, 530, 542, 644, 749, 809, 1136, 1526, 1736
BmeT110I CYCGRG 1 cut(s) 256
BmgBI CACGTC 1 cut(s) 2694
BmrI ACTGGG 2 cut(s) 1239, 2209
BmsI GCATC 7 cut(s) 1299, 1537, 1809, 2361, 2372, 2748, 2971
BmuI ACTGGG 2 cut(s) 1239, 2209
BoxI GACNNNNGTC 1 cut(s) 3327
BpiI GAAGAC 2 cut(s) 384, 3327
BpmI CTGGAG 3 cut(s) 6, 2031, 2117
Bpu10I CCTNAGC 1 cut(s) 1563
BpuEI CTTGAG 2 cut(s) 798, 3089
BpuMI CCSGG 6 cut(s) 257, 258, 305, 591, 628, 987
Bsa29I ATCGAT 1 cut(s) 1650
BsaBI GATNNNNATC 1 cut(s) 1116
BsaHI GRCGYC 1 cut(s) 3141
BsaWI WCCGGW 3 cut(s) 119, 2858, 3016
BsaXI ACNNNNNCTCC 6 cut(s) 1069, 1099, 2256, 2286, 2805, 2835
Bse8I GATNNNNATC 1 cut(s) 1116
BseCI ATCGAT 1 cut(s) 1650
BseGI GGATG 6 cut(s) 209, 1314, 1348, 2247, 2521, 2964
BseJI GATNNNNATC 1 cut(s) 1116
BseMII CTCAG 8 cut(s) 110, 1347, 1554, 2100, 2256, 2307, 2666, 3182
BseRI GAGGAG 7 cut(s) 9, 150, 702, 705, 819, 822, 1845
BseSI GKGCMC 6 cut(s) 31, 67, 265, 576, 1262, 1804
BseYI CCCAGC 1 cut(s) 1094
BsgI GTGCAG 1 cut(s) 1992
Bsh1236I CGCG 2 cut(s) 1506, 2634
BshNI GGYRCC 4 cut(s) 28, 64, 262, 350
BshVI ATCGAT 1 cut(s) 1650
BsiHKAI GWGCWC 5 cut(s) 724, 744, 766, 1262, 1804
BsiHKCI CYCGRG 1 cut(s) 256
BsiSI CCGG 8 cut(s) 120, 257, 305, 590, 627, 986, 2859, 3017
BslFI GGGAC 4 cut(s) 735, 2685, 2805, 3315
BsmAI GTCTC 4 cut(s) 1218, 1490, 1856, 2601
BsmFI GGGAC 4 cut(s) 735, 2685, 2805, 3315
BsmI GAATGC 5 cut(s) 733, 1023, 1669, 2433, 3296
BsoBI CYCGRG 1 cut(s) 256
Bsp1407I TGTACA 1 cut(s) 1837
Bsp19I CCATGG 1 cut(s) 3334
BspCNI CTCAG 8 cut(s) 109, 1348, 1555, 2101, 2255, 2306, 2665, 3181
BspDI ATCGAT 1 cut(s) 1650
BspFNI CGCG 2 cut(s) 1506, 2634
BspHI TCATGA 1 cut(s) 1437
BspMAI CTGCAG 5 cut(s) 319, 361, 1693, 1809, 3183
BspMI ACCTGC 3 cut(s) 871, 2260, 3264
BspQI GCTCTTC 1 cut(s) 2083
BspT107I GGYRCC 4 cut(s) 28, 64, 262, 350
BsrBI CCGCTC 1 cut(s) 2890
BsrGI TGTACA 1 cut(s) 1837
BssNI GRCGYC 1 cut(s) 3141
BssSI CACGAG 1 cut(s) 717
BssT1I CCWWGG 2 cut(s) 32, 3334
Bst2BI CACGAG 1 cut(s) 717
Bst4CI ACNGT 9 cut(s) 47, 399, 858, 981, 1582, 2468, 2560, 2779, 3086
Bst6I CTCTTC 1 cut(s) 2083
BstACI GRCGYC 1 cut(s) 3141
BstAPI GCANNNNNTGC 4 cut(s) 269, 739, 761, 1688
BstAUI TGTACA 1 cut(s) 1837
BstC8I GCNNGC 8 cut(s) 152, 315, 821, 1200, 1460, 1629, 1696, 2676
BstDSI CCRYGG 2 cut(s) 2139, 3334
BstEII GGTNACC 1 cut(s) 2584
BstENI CCTNNNNNAGG 2 cut(s) 21, 525
BstF5I GGATG 6 cut(s) 209, 1314, 1348, 2247, 2521, 2964
BstFNI CGCG 2 cut(s) 1506, 2634
BstH2I RGCGCY 1 cut(s) 2066
BstHHI GCGC 5 cut(s) 280, 457, 587, 2065, 2636
BstMAI GTCTC 4 cut(s) 1218, 1490, 1856, 2601
BstNSI RCATGY 3 cut(s) 130, 823, 3368
BstPAI GACNNNNGTC 1 cut(s) 3327
BstPI GGTNACC 1 cut(s) 2584
BstSFI CTRYAG 5 cut(s) 315, 357, 1689, 1805, 3179
BstSLI GKGCMC 6 cut(s) 31, 67, 265, 576, 1262, 1804
BstUI CGCG 2 cut(s) 1506, 2634
BstV2I GAAGAC 2 cut(s) 384, 3327
BstX2I RGATCY 5 cut(s) 689, 773, 962, 3002, 3283
BstXI CCANNNNNNTGG 2 cut(s) 861, 2962
BstYI RGATCY 5 cut(s) 689, 773, 962, 3002, 3283
Bsu15I ATCGAT 1 cut(s) 1650
BsuI GTATCC 2 cut(s) 1666, 2961
BsuTUI ATCGAT 1 cut(s) 1650
BtgI CCRYGG 2 cut(s) 2139, 3334
BtrI CACGTC 1 cut(s) 2694
BtsCI GGATG 6 cut(s) 209, 1314, 1348, 2247, 2521, 2964
BtsI GCAGTG 6 cut(s) 1031, 1281, 1513, 1705, 1802, 2373
BveI ACCTGC 3 cut(s) 871, 2260, 3264
Cac8I GCNNGC 8 cut(s) 152, 315, 821, 1200, 1460, 1629, 1696, 2676
CciI TCATGA 1 cut(s) 1437
CfoI GCGC 5 cut(s) 280, 457, 587, 2065, 2636
Cfr9I CCCGGG 1 cut(s) 256
ClaI ATCGAT 1 cut(s) 1650
CseI GACGC 2 cut(s) 2182, 3130
CsiI ACCWGGT 1 cut(s) 265
Csp6I GTAC 9 cut(s) 1151, 1636, 1838, 2007, 2410, 2714, 2856, 2927, 3362
CspCI CAANNNNNGTGG 4 cut(s) 687, 722, 1462, 1497
CviQI GTAC 9 cut(s) 1151, 1636, 1838, 2007, 2410, 2714, 2856, 2927, 3362
DraI TTTAAA 1 cut(s) 2154
DraIII CACNNNGTG 1 cut(s) 269
EaeI YGGCCR 3 cut(s) 220, 385, 863
Eam1104I CTCTTC 1 cut(s) 2083
EarI CTCTTC 1 cut(s) 2083
EciI GGCGGA 1 cut(s) 1185
Eco130I CCWWGG 2 cut(s) 32, 3334
Eco147I AGGCCT 1 cut(s) 313
Eco24I GRGCYC 1 cut(s) 992
Eco47I GGWCC 9 cut(s) 497, 530, 542, 644, 749, 809, 1136, 1526, 1736
Eco47III AGCGCT 1 cut(s) 2064
Eco57I CTGAAG 6 cut(s) 687, 1131, 1752, 2103, 2837, 3273
Eco88I CYCGRG 1 cut(s) 256
Eco91I GGTNACC 1 cut(s) 2584
EcoNI CCTNNNNNAGG 2 cut(s) 21, 525
EcoO109I RGGNCCY 3 cut(s) 530, 809, 1736
EcoO65I GGTNACC 1 cut(s) 2584
EcoRI GAATTC 1 cut(s) 2577
EcoT14I CCWWGG 2 cut(s) 32, 3334
EcoT22I ATGCAT 1 cut(s) 735
EcoT38I GRGCYC 1 cut(s) 992
ErhI CCWWGG 2 cut(s) 32, 3334
FaqI GGGAC 4 cut(s) 735, 2685, 2805, 3315
FauI CCCGC 3 cut(s) 760, 955, 1511
FblI GTMKAC 1 cut(s) 2448
FokI GGATG 6 cut(s) 196, 1321, 1335, 2234, 2528, 2971
FriOI GRGCYC 1 cut(s) 992
FspBI CTAG 9 cut(s) 33, 183, 408, 558, 1005, 1523, 1859, 2073, 2610
GlaI GCGC 5 cut(s) 279, 456, 586, 2064, 2635
GsaI CCCAGC 1 cut(s) 1098
GsuI CTGGAG 3 cut(s) 6, 2031, 2117
HaeII RGCGCY 1 cut(s) 2066
HapII CCGG 8 cut(s) 120, 257, 305, 590, 627, 986, 2859, 3017
HgaI GACGC 2 cut(s) 2182, 3130
HhaI GCGC 5 cut(s) 280, 457, 587, 2065, 2636
Hin1I GRCGYC 1 cut(s) 3141
Hin6I GCGC 5 cut(s) 278, 455, 585, 2063, 2634
HinP1I GCGC 5 cut(s) 278, 455, 585, 2063, 2634
HincII GTYRAC 1 cut(s) 1898
HindII GTYRAC 1 cut(s) 1898
HinfI GANTC 8 cut(s) 110, 139, 1498, 1769, 1958, 3022, 3113, 3328
HpaII CCGG 8 cut(s) 120, 257, 305, 590, 627, 986, 2859, 3017
HphI GGTGA 9 cut(s) 237, 387, 687, 1397, 3008, 3031, 3047, 3089, 3136
Hpy99I CGWCG 1 cut(s) 2198
HpyAV CCTTC 9 cut(s) 244, 531, 666, 1352, 1727, 2078, 2107, 2299, 3297
HpyCH4III ACNGT 9 cut(s) 47, 399, 858, 981, 1582, 2468, 2560, 2779, 3086
HpyCH4IV ACGT 7 cut(s) 1246, 1540, 1798, 2489, 2693, 3042, 3096
HpySE526I ACGT 7 cut(s) 1246, 1540, 1798, 2489, 2693, 3042, 3096
Hsp92I GRCGYC 1 cut(s) 3141
HspAI GCGC 5 cut(s) 278, 455, 585, 2063, 2634
LguI GCTCTTC 1 cut(s) 2083
LweI GCATC 7 cut(s) 1299, 1537, 1809, 2361, 2372, 2748, 2971
MabI ACCWGGT 1 cut(s) 265
MaeI CTAG 9 cut(s) 33, 183, 408, 558, 1005, 1523, 1859, 2073, 2610
MaeII ACGT 7 cut(s) 1246, 1540, 1798, 2489, 2693, 3042, 3096
MaeIII GTNAC 9 cut(s) 47, 122, 1247, 2341, 2468, 2485, 2584, 2663, 3142
MbiI CCGCTC 1 cut(s) 2890
MfeI CAATTG 1 cut(s) 2166
MflI RGATCY 5 cut(s) 689, 773, 962, 3002, 3283
MlsI TGGCCA 3 cut(s) 222, 387, 865
MluNI TGGCCA 3 cut(s) 222, 387, 865
MlyI GAGTC 3 cut(s) 1492, 1763, 3337
MmeI TCCRAC 4 cut(s) 667, 749, 1952, 2462
Mox20I TGGCCA 3 cut(s) 222, 387, 865
Mph1103I ATGCAT 1 cut(s) 735
MroXI GAANNNNTTC 1 cut(s) 1923
MscI TGGCCA 3 cut(s) 222, 387, 865
MseI TTAA 5 cut(s) 144, 2153, 2492, 2846, 3089
MslI CAYNNNNRTG 3 cut(s) 859, 2612, 3045
Msp20I TGGCCA 3 cut(s) 222, 387, 865
MspA1I CMGCKG 3 cut(s) 356, 1631, 3133
MspI CCGG 8 cut(s) 120, 257, 305, 590, 627, 986, 2859, 3017
MunI CAATTG 1 cut(s) 2166
Mva1269I GAATGC 5 cut(s) 733, 1023, 1669, 2433, 3296
MvnI CGCG 2 cut(s) 1506, 2634
NciI CCSGG 6 cut(s) 257, 258, 305, 591, 628, 987
NcoI CCATGG 1 cut(s) 3334
NmeAIII GCCGAG 2 cut(s) 268, 1108
NmuCI GTSAC 3 cut(s) 2341, 2468, 3142
NsiI ATGCAT 1 cut(s) 735
NspI RCATGY 3 cut(s) 130, 823, 3368
OliI CACNNNNGTG 1 cut(s) 3045
PaeI GCATGC 1 cut(s) 823
PagI TCATGA 1 cut(s) 1437
PaqCI CACCTGC 1 cut(s) 871
PceI AGGCCT 1 cut(s) 313
PciI ACATGT 1 cut(s) 3364
PciSI GCTCTTC 1 cut(s) 2083
PcsI WCGNNNNNNNCGW 1 cut(s) 1408
PctI GAATGC 5 cut(s) 733, 1023, 1669, 2433, 3296
PdmI GAANNNNTTC 1 cut(s) 1923
PfeI GAWTC 5 cut(s) 110, 139, 1958, 3022, 3113
PflMI CCANNNNNTGG 6 cut(s) 383, 620, 686, 2051, 2140, 3032
PfoI TCCNGGA 1 cut(s) 958
PleI GAGTC 3 cut(s) 1492, 1763, 3336
PpsI GAGTC 3 cut(s) 1492, 1763, 3336
PpuMI RGGWCCY 3 cut(s) 530, 809, 1736
PscI ACATGT 1 cut(s) 3364
PshAI GACNNNNGTC 1 cut(s) 3327
PshBI ATTAAT 1 cut(s) 2846
Psp1406I AACGTT 1 cut(s) 2489
Psp5II RGGWCCY 3 cut(s) 530, 809, 1736
PspEI GGTNACC 1 cut(s) 2584
PspFI CCCAGC 1 cut(s) 1094
PspPPI RGGWCCY 3 cut(s) 530, 809, 1736
PstI CTGCAG 5 cut(s) 319, 361, 1693, 1809, 3183
PsuI RGATCY 5 cut(s) 689, 773, 962, 3002, 3283
PvuII CAGCTG 2 cut(s) 1631, 3133
RsaI GTAC 9 cut(s) 1152, 1637, 1839, 2008, 2411, 2715, 2857, 2928, 3363
RsaNI GTAC 9 cut(s) 1151, 1636, 1838, 2007, 2410, 2714, 2856, 2927, 3362
RseI CAYNNNNRTG 3 cut(s) 859, 2612, 3045
SapI GCTCTTC 1 cut(s) 2083
SaqAI TTAA 5 cut(s) 144, 2153, 2492, 2846, 3089
ScaI AGTACT 3 cut(s) 1152, 2008, 2411
SchI GAGTC 3 cut(s) 1492, 1763, 3337
SexAI ACCWGGT 1 cut(s) 265
SfaNI GCATC 7 cut(s) 1299, 1537, 1809, 2361, 2372, 2748, 2971
SfcI CTRYAG 5 cut(s) 315, 357, 1689, 1805, 3179
SinI GGWCC 9 cut(s) 497, 530, 542, 644, 749, 809, 1136, 1526, 1736
SmaI CCCGGG 1 cut(s) 258
SmiMI CAYNNNNRTG 3 cut(s) 859, 2612, 3045
SmlI CTYRAG 2 cut(s) 813, 3068
SmoI CTYRAG 2 cut(s) 813, 3068
SpeI ACTAGT 1 cut(s) 2609
SphI GCATGC 1 cut(s) 823
SseBI AGGCCT 1 cut(s) 313
SspMI CTAG 9 cut(s) 33, 183, 408, 558, 1005, 1523, 1859, 2073, 2610
StuI AGGCCT 1 cut(s) 313
StyI CCWWGG 2 cut(s) 32, 3334
TaaI ACNGT 9 cut(s) 47, 399, 858, 981, 1582, 2468, 2560, 2779, 3086
TaiI ACGT 7 cut(s) 1249, 1543, 1801, 2492, 2696, 3045, 3099
TaqI TCGA 4 cut(s) 1402, 1650, 1772, 2196
TatI WGTACW 5 cut(s) 1150, 1635, 1837, 2006, 2409
TauI GCSGC 5 cut(s) 232, 826, 2353, 2681, 3240
TfiI GAWTC 5 cut(s) 110, 139, 1958, 3022, 3113
Tru1I TTAA 5 cut(s) 144, 2153, 2492, 2846, 3089
Tru9I TTAA 5 cut(s) 144, 2153, 2492, 2846, 3089
TseFI GTSAC 3 cut(s) 2341, 2468, 3142
Tsp45I GTSAC 3 cut(s) 2341, 2468, 3142
TspGWI ACGGA 1 cut(s) 2587
TspMI CCCGGG 1 cut(s) 256
Van91I CCANNNNNTGG 6 cut(s) 383, 620, 686, 2051, 2140, 3032
VneI GTGCAC 2 cut(s) 1258, 1800
VpaK11BI GGWCC 9 cut(s) 497, 530, 542, 644, 749, 809, 1136, 1526, 1736
VspI ATTAAT 1 cut(s) 2846
XagI CCTNNNNNAGG 2 cut(s) 21, 525
XapI RAATTY 8 cut(s) 133, 667, 1122, 1586, 2171, 2577, 2765, 3120
XbaI TCTAGA 2 cut(s) 407, 1858
XceI RCATGY 3 cut(s) 130, 823, 3368
XcmI CCANNNNNNNNNTGG 1 cut(s) 3332
XmaI CCCGGG 1 cut(s) 256
XmaJI CCTAGG 1 cut(s) 32
XmiI GTMKAC 1 cut(s) 2448
XmnI GAANNNNTTC 1 cut(s) 1923
XspI CTAG 9 cut(s) 33, 183, 408, 558, 1005, 1523, 1859, 2073, 2610
ZrmI AGTACT 3 cut(s) 1152, 2008, 2411
Zsp2I ATGCAT 1 cut(s) 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.