Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001708

Physical Location & Seq

Genomic Coordinates Reverse (-)

15242765 .. 15244998

Gene Structure 2234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGTTCAATAAGGTTGATCTCTCTGTTTCCTCGTACGATACTGCTTGGGTGGCAATGGTCCCTTCTCCAAATTCTCAGGACCCTTTTTTCCCTGAATGTGTCAACTGGCTATTGTGTAATCAACTCCACGACGGGTCATGGGGTCATCCAAATTGCCATCCTTTGTTAAAGAAAGATGCTCTTTTATCTACGTTAGCATGTATCCTTGCACTAAAGCAATGGAGTGTTGGTGAAGAGCTAATTAACAACGGACTACGTTTTATTGAGTCAAATATATCTTCAGCTACCGATGAAGTGCAACAATCTCCTCTTGGATTTGATATAATATTTCCTTCTTTGATACAATCCGCAATGAATTTGAATATCAATCTTCCCCTTGGAGAAACAACCCTGGCCAGTATTTTCCACATGAGAGACTTTGAGCTTCAAAGTCAACATCTATCTTGTTTCCAAATGTTATCCTTTAGAGGAAATGGAAGCAACTCAGAGGGTTGGAGAGCCTTCTTAGCTTATATTTCGGAAGGAAATGCAGAGTTGCAGGATTGGCAGACGGTTATGAAGTACCAAAGGAAGAATGGGTCCTTGTTTAATTCACCATCAACCACAGCCGCTGCTTTTACTCACACTAAGAATGCTGATTGTCTTCAGTACCTCCGCAGACTCTTAGACAAGTTTGGGAATGCAGTTCCAACGATATATCCTCTAGATAAATATGCTCGTCTTTCTATGGTTTCCAGCCTTGAAAGTTTGGGTATCGATCGACATTTCAGGGATGAAATTAGAAGCGTAATCGATGAAACATACAGATTATGGCTGCAGGGGGATGAAGAAATATTTTCAGATGCTGCCACCTGTGCAATGGCGTTTCGACTCTTACGTGTTAATGGATATGGCATTTCTGCAGATCCATTAGTAAAATTTTCCGAAGATTGTTTCTTCAATTCCTACGGAGGATACTTGAAGGACGTTAGTGCTGCCTTAGAATTGTTTAAGGCTTCCAAAATCATCATACATCCAGATGAGTCAATTCTTGAGAAACAAAACTACTGGACAAGTCATTTTCTGAAAGAAGAGTTATCCAATATGTTAATTCAGCCTCATAGACCGAATAAGCACATTGCCCTAGAGGTGGATCATGCTCTTAAATCCCCTTACCATGCAAATTTGGGACGGTTATCAACCAAGAGAGCTATAAAACATTACAACACAGATGGTACAAGGATTCTGAAATCTTCGTATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009899 GO:0009987 GO:0010033 GO:0010333 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

415

Amino Acids

46.97

Weight (kDa)

6.16

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	181 - 381	4.4e-42	Terpene synthase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79460
fragaria_vesca	FvH4_3g14116 FvH4_3g14130 FvH4_3g14131 FvH4_3g16270
malus_domestica	MD03G1187200.v1.1 MD10G1215700.v1.1 MD10G1215900.v1.1 MD10G1216200.v1.1
prunus_persica	Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128600_v2.0.a1 Prupe.4G128700_v2.0.a1
pyrus_communis	pycom03g13990 pycom10g18220
rosa_chinensis	RchiOBHm_Chr5g0023441 RchiOBHm_Chr5g0023471 RchiOBHm_Chr5g0023641
rosa_laevigata	RLG00000032721
rosa_multiflora	Rmu_co8406553.1_g000001 Rmu_sc0004593.1_g000004 Rmu_sc0005664.1_g000001 Rmu_sc0005664.1_g000005
rosa_roxburghii	Rroxscaffold_1G00055600 Rroxscaffold_1G00055620 Rroxscaffold_1G00055910
rosa_rugosa	Rorug05G0079200 Rorug05G0079300
rosa_samantha	Rh5AG166100 Rh5AG166200 Rh5AG166300 Rh5AG167600 Rh5AG168000 Rh5BG165300 Rh5BG165500 Rh5CG180300 Rh5CG180400 Rh5CG181400 Rh5DG166800 Rh5DG166900 Rh5DG167800
rosa_wichuraiana	Rw0G019600 Rw5G014950 Rw5G014970 Rw5G015110 Rw5G015120 Rw5G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	348, 609, 655
AclWI	GGATC	2 cut(s)	899, 1140
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	4 cut(s)	70, 355, 917, 1162
AcuI	CTGAAG	2 cut(s)	264, 629
AfaI	GTAC	4 cut(s)	35, 563, 650, 1216
AfiI	CCNNNNNNNGG	1 cut(s)	1129
AflIII	ACRYGT	1 cut(s)	877
AgsI	TTSAA	6 cut(s)	7, 361, 428, 743, 940, 961
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	5 cut(s)	238, 284, 424, 509, 1190
AluI	AGCT	5 cut(s)	238, 284, 424, 509, 1190
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	2 cut(s)	899, 1140
AlwNI	CAGNNNCTG	2 cut(s)	611, 845
AoxI	GGCC	1 cut(s)	393
ApeKI	GCWGC	4 cut(s)	611, 814, 845, 974
ApoI	RAATTY	4 cut(s)	70, 355, 917, 1162
AspS9I	GGNCC	3 cut(s)	58, 79, 579
AsuHPI	GGTGA	2 cut(s)	242, 585
AvaII	GGWCC	3 cut(s)	58, 79, 579
BalI	TGGCCA	1 cut(s)	395
BbsI	GAAGAC	1 cut(s)	635
BbvI	GCAGC	4 cut(s)	598, 801, 832, 961
BccI	CCATC	3 cut(s)	165, 604, 1205
BciT130I	CCWGG	1 cut(s)	392
BciVI	GTATCC	2 cut(s)	212, 947
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	2 cut(s)	704, 1124
BfmI	CTRYAG	2 cut(s)	815, 900
BfuI	GTATCC	2 cut(s)	212, 947
BisI	GCNGC	5 cut(s)	609, 612, 815, 846, 975
BlsI	GCNGC	5 cut(s)	610, 613, 816, 847, 976
Bme1390I	CCNGG	1 cut(s)	392
Bme18I	GGWCC	3 cut(s)	58, 79, 579
BmgT120I	GGNCC	3 cut(s)	58, 79, 579
BmiI	GGNNCC	3 cut(s)	60, 81, 580
BmrFI	CCNGG	1 cut(s)	392
BmsI	GCATC	2 cut(s)	166, 832
BpiI	GAAGAC	1 cut(s)	635
BpuEI	CTTGAG	1 cut(s)	1052
Bsa29I	ATCGAT	2 cut(s)	756, 792
BsaAI	YACGTR	1 cut(s)	878
BsaJI	CCNNGG	2 cut(s)	376, 390
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	1129
Bse1I	ACTGG	3 cut(s)	110, 396, 1052
Bse3DI	GCAATG	5 cut(s)	60, 224, 357, 864, 1116
BseBI	CCWGG	1 cut(s)	392
BseCI	ATCGAT	2 cut(s)	756, 792
BseDI	CCNNGG	2 cut(s)	376, 390
BseGI	GGATG	5 cut(s)	145, 157, 778, 829, 1012
BseLI	CCNNNNNNNGG	1 cut(s)	1129
BseMI	GCAATG	5 cut(s)	60, 224, 357, 864, 1116
BseMII	CTCAG	2 cut(s)	89, 498
BseNI	ACTGG	3 cut(s)	110, 396, 1052
BseRI	GAGGAG	1 cut(s)	297
BseXI	GCAGC	4 cut(s)	598, 801, 832, 961
Bsh1285I	CGRYCG	1 cut(s)	760
BshFI	GGCC	1 cut(s)	395
BshVI	ATCGAT	2 cut(s)	756, 792
BsiEI	CGRYCG	1 cut(s)	760
BsiWI	CGTACG	1 cut(s)	33
BslFI	GGGAC	2 cut(s)	44, 1182
BslI	CCNNNNNNNGG	1 cut(s)	1129
BsmAI	GTCTC	1 cut(s)	408
BsmFI	GGGAC	2 cut(s)	44, 1182
BsmI	GAATGC	2 cut(s)	637, 685
BsnI	GGCC	1 cut(s)	395
Bsp143I	GATC	4 cut(s)	16, 757, 904, 1132
BspACI	CCGC	3 cut(s)	348, 609, 655
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	2 cut(s)	88, 497
BspDI	ATCGAT	2 cut(s)	756, 792
BspLI	GGNNCC	3 cut(s)	60, 81, 580
BspMAI	CTGCAG	2 cut(s)	819, 904
BspPI	GGATC	2 cut(s)	899, 1140
BspQI	GCTCTTC	1 cut(s)	228
BsrDI	GCAATG	5 cut(s)	60, 224, 357, 864, 1116
BsrI	ACTGG	3 cut(s)	110, 396, 1052
BssECI	CCNNGG	2 cut(s)	376, 390
BssMI	GATC	4 cut(s)	16, 757, 904, 1132
BssT1I	CCWWGG	1 cut(s)	376
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	2 cut(s)	553, 1173
Bst6I	CTCTTC	2 cut(s)	228, 1065
BstBAI	YACGTR	1 cut(s)	878
BstDEI	CTNAG	6 cut(s)	75, 484, 505, 627, 664, 979
BstF5I	GGATG	5 cut(s)	145, 157, 778, 829, 1012
BstKTI	GATC	4 cut(s)	19, 760, 907, 1135
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	4 cut(s)	16, 757, 904, 1132
BstMCI	CGRYCG	1 cut(s)	760
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 506, 544, 854
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	390
BstSFI	CTRYAG	2 cut(s)	815, 900
BstV1I	GCAGC	4 cut(s)	598, 801, 832, 961
BstV2I	GAAGAC	1 cut(s)	635
BstX2I	RGATCY	1 cut(s)	904
BstYI	RGATCY	1 cut(s)	904
Bsu15I	ATCGAT	2 cut(s)	756, 792
BsuI	GTATCC	2 cut(s)	212, 947
BsuRI	GGCC	1 cut(s)	395
BsuTUI	ATCGAT	2 cut(s)	756, 792
BtsCI	GGATG	5 cut(s)	145, 157, 778, 829, 1012
CaiI	CAGNNNCTG	2 cut(s)	611, 845
Cfr13I	GGNCC	3 cut(s)	58, 79, 579
ClaI	ATCGAT	2 cut(s)	756, 792
Csp6I	GTAC	4 cut(s)	34, 562, 649, 1215
CviAII	CATG	5 cut(s)	138, 198, 409, 1136, 1157
CviQI	GTAC	4 cut(s)	34, 562, 649, 1215
DdeI	CTNAG	6 cut(s)	75, 484, 505, 627, 664, 979
DpnI	GATC	4 cut(s)	18, 759, 906, 1134
DpnII	GATC	4 cut(s)	16, 757, 904, 1132
EaeI	YGGCCR	1 cut(s)	393
Eam1104I	CTCTTC	2 cut(s)	228, 1065
EarI	CTCTTC	2 cut(s)	228, 1065
Eco130I	CCWWGG	1 cut(s)	376
Eco47I	GGWCC	3 cut(s)	58, 79, 579
Eco57I	CTGAAG	2 cut(s)	264, 629
EcoO109I	RGGNCCY	2 cut(s)	79, 579
EcoRII	CCWGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	5 cut(s)	141, 201, 412, 1139, 1160
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	2 cut(s)	44, 1182
FatI	CATG	5 cut(s)	137, 197, 408, 1135, 1156
Fnu4HI	GCNGC	5 cut(s)	609, 612, 815, 846, 975
FokI	GGATG	5 cut(s)	132, 144, 785, 836, 999
Fsp4HI	GCNGC	5 cut(s)	609, 612, 815, 846, 975
FspBI	CTAG	2 cut(s)	704, 1124
GluI	GCNGC	5 cut(s)	609, 612, 815, 846, 975
HaeIII	GGCC	1 cut(s)	395
Hin1II	CATG	5 cut(s)	141, 201, 412, 1139, 1160
HincII	GTYRAC	2 cut(s)	103, 434
HindII	GTYRAC	2 cut(s)	103, 434
HinfI	GANTC	5 cut(s)	266, 660, 870, 1022, 1222
HphI	GGTGA	2 cut(s)	242, 585
Hpy166II	GTNNAC	2 cut(s)	103, 434
Hpy188I	TCNGA	6 cut(s)	487, 520, 841, 925, 1065, 1227
Hpy188III	TCNNGA	4 cut(s)	77, 704, 1016, 1031
Hpy8I	GTNNAC	2 cut(s)	103, 434
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	5 cut(s)	72, 342, 511, 515, 955
HpyCH4III	ACNGT	2 cut(s)	553, 1173
HpyCH4IV	ACGT	4 cut(s)	191, 256, 877, 966
HpyCH4V	TGCA	9 cut(s)	209, 298, 530, 538, 683, 817, 857, 902, 1160
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 506, 544, 854
HpyF3I	CTNAG	6 cut(s)	75, 484, 505, 627, 664, 979
HpySE526I	ACGT	4 cut(s)	191, 256, 877, 966
Hsp92II	CATG	5 cut(s)	141, 201, 412, 1139, 1160
Kzo9I	GATC	4 cut(s)	16, 757, 904, 1132
LguI	GCTCTTC	1 cut(s)	228
Lsp1109I	GCAGC	4 cut(s)	598, 801, 832, 961
LweI	GCATC	2 cut(s)	166, 832
MaeI	CTAG	2 cut(s)	704, 1124
MaeII	ACGT	4 cut(s)	191, 256, 877, 966
MalI	GATC	4 cut(s)	18, 759, 906, 1134
MboI	GATC	4 cut(s)	16, 757, 904, 1132
MflI	RGATCY	1 cut(s)	904
MlsI	TGGCCA	1 cut(s)	395
MluNI	TGGCCA	1 cut(s)	395
MlyI	GAGTC	4 cut(s)	275, 654, 864, 1031
MmeI	TCCRAC	2 cut(s)	473, 713
MnlI	CCTC	9 cut(s)	40, 318, 461, 481, 662, 711, 944, 1107, 1120
Mox20I	TGGCCA	1 cut(s)	395
MscI	TGGCCA	1 cut(s)	395
MseI	TTAA	7 cut(s)	167, 243, 588, 882, 990, 1088, 1143
MslI	CAYNNNNRTG	1 cut(s)	1017
Msp20I	TGGCCA	1 cut(s)	395
MspA1I	CMGCKG	1 cut(s)	611
MspR9I	CCNGG	1 cut(s)	392
Mva1269I	GAATGC	2 cut(s)	637, 685
MvaI	CCWGG	1 cut(s)	392
MwoI	GCNNNNNNNGC	4 cut(s)	50, 506, 544, 854
NdeII	GATC	4 cut(s)	16, 757, 904, 1132
NlaIII	CATG	5 cut(s)	141, 201, 412, 1139, 1160
NlaIV	GGNNCC	3 cut(s)	60, 81, 580
NspI	RCATGY	1 cut(s)	201
PciSI	GCTCTTC	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	874
PctI	GAATGC	2 cut(s)	637, 685
PfeI	GAWTC	1 cut(s)	1222
Pfl23II	CGTACG	1 cut(s)	33
PkrI	GCNGC	5 cut(s)	610, 613, 816, 847, 976
Ple19I	CGATCG	1 cut(s)	760
PleI	GAGTC	4 cut(s)	274, 654, 864, 1030
PpsI	GAGTC	4 cut(s)	274, 654, 864, 1030
Ppu21I	YACGTR	1 cut(s)	878
PpuMI	RGGWCCY	2 cut(s)	79, 579
Psp5II	RGGWCCY	2 cut(s)	79, 579
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspLI	CGTACG	1 cut(s)	33
PspN4I	GGNNCC	3 cut(s)	60, 81, 580
PspPI	GGNCC	3 cut(s)	58, 79, 579
PspPPI	RGGWCCY	2 cut(s)	79, 579
PstI	CTGCAG	2 cut(s)	819, 904
PstNI	CAGNNNCTG	2 cut(s)	611, 845
PsuI	RGATCY	1 cut(s)	904
PvuI	CGATCG	1 cut(s)	760
RsaI	GTAC	4 cut(s)	35, 563, 650, 1216
RsaNI	GTAC	4 cut(s)	34, 562, 649, 1215
RseI	CAYNNNNRTG	1 cut(s)	1017
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	7 cut(s)	167, 243, 588, 882, 990, 1088, 1143
SatI	GCNGC	5 cut(s)	609, 612, 815, 846, 975
Sau3AI	GATC	4 cut(s)	16, 757, 904, 1132
Sau96I	GGNCC	3 cut(s)	58, 79, 579
SchI	GAGTC	4 cut(s)	275, 654, 864, 1031
ScrFI	CCNGG	1 cut(s)	392
SfaNI	GCATC	2 cut(s)	166, 832
SfcI	CTRYAG	2 cut(s)	815, 900
SinI	GGWCC	3 cut(s)	58, 79, 579
SmiMI	CAYNNNNRTG	1 cut(s)	1017
SmlI	CTYRAG	1 cut(s)	1031
SmoI	CTYRAG	1 cut(s)	1031
SsiI	CCGC	3 cut(s)	348, 609, 655
SspI	AATATT	2 cut(s)	327, 834
SspMI	CTAG	2 cut(s)	704, 1124
StyD4I	CCNGG	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	2 cut(s)	553, 1173
TaiI	ACGT	4 cut(s)	194, 259, 880, 969
TaqI	TCGA	4 cut(s)	756, 760, 792, 868
TaqII	GACCGA	1 cut(s)	1120
TauI	GCSGC	1 cut(s)	611
TfiI	GAWTC	1 cut(s)	1222
Tru1I	TTAA	7 cut(s)	167, 243, 588, 882, 990, 1088, 1143
Tru9I	TTAA	7 cut(s)	167, 243, 588, 882, 990, 1088, 1143
TseI	GCWGC	4 cut(s)	611, 814, 845, 974
TspDTI	ATGAA	6 cut(s)	306, 368, 572, 789, 810, 840
TspGWI	ACGGA	2 cut(s)	264, 963
VpaK11BI	GGWCC	3 cut(s)	58, 79, 579
XapI	RAATTY	4 cut(s)	70, 355, 917, 1162
XbaI	TCTAGA	1 cut(s)	703
XceI	RCATGY	1 cut(s)	201
XcmI	CCANNNNNNNNNTGG	2 cut(s)	572, 856
XspI	CTAG	2 cut(s)	704, 1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.