pycom03g20570

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
21077581 .. 21078177
597 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g20570.1

Sequence Viewer

Length: 597 bp
ATGCCACTACACTTCTTTGCCCGCCACAACAAGAAGGGCAGGACAGCAAAGGACATCTTCACCGAAACCCACGACACAATCGTCAAGACCGGGGGGGAGTGGCTGACCAACACCTCCAAGTCCTGCTCTGTCGTGGCCGCCCTCGTTGCCACTGTCGCCTTTGCAACCTCAACCACCATCCCCGGCGGCATGAACAAAAACAGCGGAAAACCAACCCTAGAAAACCAGCCAGCTTTCAACATCTTCGCCATTGCCTCCCTGGTCGCCCTCTGCTTCTCCGTCATGGCCGTGGTCATGTTCCTAGCCATCTTAACTTCCCGGTACCAAGAGAAGGACTTCGGTAAGGACCTGCCGAGAAAGCTTTTGGTAGGGTTGACGTCGCTGTTTGTCTCTATAGCTTCCATGTTGGTTTCTTTTTGCACGGGACATTTTTTCGTGCTTAAAGATAAGCTCAAATACGCTGCATTTCCGGTTTACGTCATCACTTGCTTGCCGATAACCTTTTTTGCCGTAGTGCAGTTTCCACTGTACTTTGATCTGATTTGGGCTACTTTTAAGAAGGTACCACAGCGAAGTTACAAGATAGTTCCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0000166 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006900 GO:0006901 GO:0006903 GO:0006915 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0006996 GO:0007154 GO:0007165 GO:0007166 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008625 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010469 GO:0010506 GO:0010508 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0010648 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012501 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017075 GO:0017076 GO:0017148 GO:0019222 GO:0019538 GO:0019905 GO:0022607 GO:0022898 GO:0023051 GO:0023052 GO:0023057 GO:0030162 GO:0030554 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032270 GO:0032409 GO:0032412 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0033194 GO:0033554 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034599 GO:0034762 GO:0034765 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042802 GO:0042981 GO:0043065 GO:0043066 GO:0043067 GO:0043068 GO:0043069 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043269 GO:0043280 GO:0043281 GO:0043412 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045862 GO:0046777 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061024 GO:0065003 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071447 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090114 GO:0097159 GO:0097190 GO:0097191 GO:0097367 GO:0099601 GO:0140096 GO:1900449 GO:1901265 GO:1901363 GO:1901564 GO:1901700 GO:1901701 GO:1902041 GO:1902042 GO:1904062 GO:2000112 GO:2000113 GO:2000116 GO:2000310 GO:2001056 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001257
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

199

Amino Acids

21.96

Weight (kDa)

9.67

Isoelectric Point (pI)

29.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 33 - 145 2.5e-30 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AatII GACGTC 1 cut(s) 380
Acc36I ACCTGC 1 cut(s) 357
Acc65I GGTACC 2 cut(s) 321, 562
AccB1I GGYRCC 2 cut(s) 321, 562
AciI CCGC 4 cut(s) 22, 138, 186, 204
AcoI YGGCCR 2 cut(s) 135, 285
AcyI GRCGYC 1 cut(s) 377
AfaI GTAC 3 cut(s) 323, 530, 564
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 4 cut(s) 233, 361, 398, 451
AluI AGCT 4 cut(s) 233, 361, 398, 451
Alw26I GTCTC 1 cut(s) 394
AoxI GGCC 2 cut(s) 135, 285
ApeKI GCWGC 1 cut(s) 461
Asp700I GAANNNNTTC 1 cut(s) 335
Asp718I GGTACC 2 cut(s) 321, 562
AspS9I GGNCC 1 cut(s) 346
AsuC2I CCSGG 3 cut(s) 91, 183, 319
AsuHPI GGTGA 1 cut(s) 52
AvaII GGWCC 1 cut(s) 346
BanI GGYRCC 2 cut(s) 321, 562
BbvI GCAGC 1 cut(s) 448
BccI CCATC 2 cut(s) 185, 314
BceAI ACGGC 2 cut(s) 272, 494
BciT130I CCWGG 1 cut(s) 260
BcnI CCSGG 3 cut(s) 91, 183, 319
BcoDI GTCTC 1 cut(s) 394
BfaI CTAG 2 cut(s) 218, 302
BfmI CTRYAG 1 cut(s) 393
BfuAI ACCTGC 1 cut(s) 357
BisI GCNGC 3 cut(s) 138, 187, 462
BlsI GCNGC 3 cut(s) 139, 188, 463
Bme1390I CCNGG 4 cut(s) 91, 183, 260, 319
Bme18I GGWCC 1 cut(s) 346
BmgT120I GGNCC 1 cut(s) 346
BmiI GGNNCC 2 cut(s) 323, 564
BmrFI CCNGG 4 cut(s) 91, 183, 260, 319
BpuMI CCSGG 3 cut(s) 91, 183, 319
BsaHI GRCGYC 1 cut(s) 377
BsaJI CCNNGG 4 cut(s) 90, 181, 258, 288
BsaWI WCCGGW 1 cut(s) 469
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 4 cut(s) 90, 181, 258, 288
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMI GCAATG 1 cut(s) 249
BseXI GCAGC 1 cut(s) 448
BsgI GTGCAG 1 cut(s) 536
BshFI GGCC 2 cut(s) 137, 287
BshNI GGYRCC 2 cut(s) 321, 562
BsiSI CCGG 4 cut(s) 90, 183, 319, 470
BslFI GGGAC 1 cut(s) 438
BslI CCNNNNNNNGG 1 cut(s) 331
BsmAI GTCTC 1 cut(s) 394
BsmFI GGGAC 1 cut(s) 438
BsnI GGCC 2 cut(s) 137, 287
Bsp143I GATC 1 cut(s) 535
BspACI CCGC 4 cut(s) 22, 138, 186, 204
BspANI GGCC 2 cut(s) 137, 287
BspLI GGNNCC 2 cut(s) 323, 564
BspMI ACCTGC 1 cut(s) 357
BspT107I GGYRCC 2 cut(s) 321, 562
BsrDI GCAATG 1 cut(s) 249
BssECI CCNNGG 4 cut(s) 90, 181, 258, 288
BssMI GATC 1 cut(s) 535
BssNI GRCGYC 1 cut(s) 377
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 154, 528
BstACI GRCGYC 1 cut(s) 377
BstC8I GCNNGC 3 cut(s) 22, 231, 491
BstDSI CCRYGG 1 cut(s) 288
BstF5I GGATG 1 cut(s) 177
BstKTI GATC 1 cut(s) 538
BstMAI GTCTC 1 cut(s) 394
BstMBI GATC 1 cut(s) 535
BstMWI GCNNNNNNNGC 3 cut(s) 146, 155, 358
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 4 cut(s) 89, 181, 258, 317
BstSFI CTRYAG 1 cut(s) 393
BstV1I GCAGC 1 cut(s) 448
BsuRI GGCC 2 cut(s) 137, 287
BtgI CCRYGG 1 cut(s) 288
BtsCI GGATG 1 cut(s) 177
BtsIMutI CAGTG 2 cut(s) 150, 524
BveI ACCTGC 1 cut(s) 357
Cac8I GCNNGC 3 cut(s) 22, 231, 491
Cfr13I GGNCC 1 cut(s) 346
Csp6I GTAC 3 cut(s) 322, 529, 563
CviAII CATG 4 cut(s) 190, 283, 295, 403
CviQI GTAC 3 cut(s) 322, 529, 563
DpnI GATC 1 cut(s) 537
DpnII GATC 1 cut(s) 535
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 2 cut(s) 135, 285
Eco47I GGWCC 1 cut(s) 346
EcoO109I RGGNCCY 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 258
FaeI CATG 4 cut(s) 193, 286, 298, 406
FaiI YATR 5 cut(s) 191, 284, 296, 395, 404
FalI AAGNNNNNCTT 2 cut(s) 41, 73
FaqI GGGAC 1 cut(s) 438
FatI CATG 4 cut(s) 189, 282, 294, 402
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 3 cut(s) 138, 187, 462
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 3 cut(s) 138, 187, 462
FspBI CTAG 2 cut(s) 218, 302
GluI GCNGC 3 cut(s) 138, 187, 462
HaeIII GGCC 2 cut(s) 137, 287
HapII CCGG 4 cut(s) 90, 183, 319, 470
Hin1I GRCGYC 1 cut(s) 377
Hin1II CATG 4 cut(s) 193, 286, 298, 406
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HindIII AAGCTT 1 cut(s) 359
HpaII CCGG 4 cut(s) 90, 183, 319, 470
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 2 cut(s) 375, 475
Hpy188I TCNGA 1 cut(s) 540
Hpy188III TCNNGA 1 cut(s) 85
Hpy8I GTNNAC 2 cut(s) 375, 475
Hpy99I CGWCG 1 cut(s) 382
HpyAV CCTTC 3 cut(s) 28, 325, 553
HpyCH4III ACNGT 2 cut(s) 154, 528
HpyCH4IV ACGT 2 cut(s) 377, 477
HpyCH4V TGCA 4 cut(s) 164, 420, 464, 517
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 155, 358
HpySE526I ACGT 2 cut(s) 377, 477
Hsp92I GRCGYC 1 cut(s) 377
Hsp92II CATG 4 cut(s) 193, 286, 298, 406
KpnI GGTACC 2 cut(s) 325, 566
Kzo9I GATC 1 cut(s) 535
Lsp1109I GCAGC 1 cut(s) 448
MaeI CTAG 2 cut(s) 218, 302
MaeII ACGT 2 cut(s) 377, 477
MaeIII GTNAC 1 cut(s) 575
MalI GATC 1 cut(s) 537
MboI GATC 1 cut(s) 535
MboII GAAGA 2 cut(s) 49, 235
MnlI CCTC 5 cut(s) 124, 152, 178, 265, 278
MroXI GAANNNNTTC 1 cut(s) 335
MseI TTAA 4 cut(s) 311, 441, 555, 595
MslI CAYNNNNRTG 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 204
MspI CCGG 4 cut(s) 90, 183, 319, 470
MspR9I CCNGG 4 cut(s) 91, 183, 260, 319
MvaI CCWGG 1 cut(s) 260
MwoI GCNNNNNNNGC 3 cut(s) 146, 155, 358
NciI CCSGG 3 cut(s) 91, 183, 319
NdeII GATC 1 cut(s) 535
NlaIII CATG 4 cut(s) 193, 286, 298, 406
NlaIV GGNNCC 2 cut(s) 323, 564
NmeAIII GCCGAG 1 cut(s) 378
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 335
PkrI GCNGC 3 cut(s) 139, 188, 463
PpuMI RGGWCCY 1 cut(s) 346
Psp5II RGGWCCY 1 cut(s) 346
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 2 cut(s) 323, 564
PspPI GGNCC 1 cut(s) 346
PspPPI RGGWCCY 1 cut(s) 346
RsaI GTAC 3 cut(s) 323, 530, 564
RsaNI GTAC 3 cut(s) 322, 529, 563
RseI CAYNNNNRTG 1 cut(s) 287
SaqAI TTAA 4 cut(s) 311, 441, 555, 595
SatI GCNGC 3 cut(s) 138, 187, 462
Sau3AI GATC 1 cut(s) 535
Sau96I GGNCC 1 cut(s) 346
ScrFI CCNGG 4 cut(s) 91, 183, 260, 319
SfcI CTRYAG 1 cut(s) 393
SinI GGWCC 1 cut(s) 346
SmiMI CAYNNNNRTG 1 cut(s) 287
SsiI CCGC 4 cut(s) 22, 138, 186, 204
SspMI CTAG 2 cut(s) 218, 302
StyD4I CCNGG 4 cut(s) 89, 181, 258, 317
TaaI ACNGT 2 cut(s) 154, 528
TaiI ACGT 2 cut(s) 380, 480
TatI WGTACW 1 cut(s) 528
TauI GCSGC 2 cut(s) 140, 189
Tru1I TTAA 4 cut(s) 311, 441, 555, 595
Tru9I TTAA 4 cut(s) 311, 441, 555, 595
TscAI CASTG 2 cut(s) 157, 531
TseI GCWGC 1 cut(s) 461
TspDTI ATGAA 1 cut(s) 206
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 2 cut(s) 157, 531
VpaK11BI GGWCC 1 cut(s) 346
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 335
XspI CTAG 2 cut(s) 218, 302
ZraI GACGTC 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.