RchiOBHm_Chr6g0290131

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000723
Physical Location & Seq
Reverse (-)
53252327 .. 53252725
399 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26029

Sequence Viewer

Length: 399 bp
ATGCAGTACGTGAAAAGCTCCATGGAAGCCCACTTCTTTTTCCGCTACAATAGGGATAACAAGAAGGCAGAGGACATCTTCACTGAATCCCACAGTAAACTCGTCCAAGAAGGGGTGGAGTGGCTCTCCAAGACCTCCGAGTCCTGCCCCCTTATTGCCTCCCTAGTCGCCACCGTGTCGTTTGCGACAGCAACCACCATTCCCGGCGGCATCAAAGAGGAATCTGGAAGACCAATCTTGGGAAACCAGCCACCCTTTGAAGTGTCTGCTATCTCATCACTTCTTGCCCTCTGCTTCTCAGCGACGTCTACGTTCATATTCCTGTCCATCCTCTCTTGTCTCGATACCAACAGAAGGATTTTGCATTGGAAGTGCCGTGGAAGCTTTTGCTGGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0000166 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006900 GO:0006901 GO:0006903 GO:0006915 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0006996 GO:0007154 GO:0007165 GO:0007166 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008625 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010469 GO:0010506 GO:0010508 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0010648 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012501 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017075 GO:0017076 GO:0017148 GO:0019222 GO:0019538 GO:0019905 GO:0022607 GO:0022898 GO:0023051 GO:0023052 GO:0023057 GO:0030162 GO:0030554 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032270 GO:0032409 GO:0032412 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0033194 GO:0033554 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034599 GO:0034762 GO:0034765 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042802 GO:0042981 GO:0043065 GO:0043066 GO:0043067 GO:0043068 GO:0043069 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043269 GO:0043280 GO:0043281 GO:0043412 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045862 GO:0046777 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061024 GO:0065003 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071447 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090114 GO:0097159 GO:0097190 GO:0097191 GO:0097367 GO:0099601 GO:0140096 GO:1900449 GO:1901265 GO:1901363 GO:1901564 GO:1901700 GO:1901701 GO:1902041 GO:1902042 GO:1904062 GO:2000112 GO:2000113 GO:2000116 GO:2000310 GO:2001056 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001257
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

132

Amino Acids

14.73

Weight (kDa)

7.65

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 40 - 123 1.9e-17 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 139
AatII GACGTC 1 cut(s) 308
AccI GTMKAC 1 cut(s) 308
AciI CCGC 2 cut(s) 43, 207
AcyI GRCGYC 1 cut(s) 305
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 3 cut(s) 112, 239, 354
AgsI TTSAA 1 cut(s) 260
AluBI AGCT 2 cut(s) 18, 384
AluI AGCT 2 cut(s) 18, 384
Alw26I GTCTC 1 cut(s) 344
AoxI GGCC 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 393
AsuC2I CCSGG 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 235
BccI CCATC 1 cut(s) 335
BceAI ACGGC 1 cut(s) 360
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 1 cut(s) 164
BisI GCNGC 1 cut(s) 208
BlsI GCNGC 1 cut(s) 209
Bme1390I CCNGG 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 393
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 235
BplI GAGNNNNNCTC 2 cut(s) 110, 142
BpuMI CCSGG 1 cut(s) 204
BsaAI YACGTR 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 305
BsaJI CCNNGG 2 cut(s) 21, 376
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 239, 354
BseDI CCNNGG 2 cut(s) 21, 376
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 3 cut(s) 112, 239, 354
BseMII CTCAG 1 cut(s) 312
BseYI CCCAGC 1 cut(s) 390
BshFI GGCC 1 cut(s) 395
BsiSI CCGG 1 cut(s) 204
BslI CCNNNNNNNGG 3 cut(s) 112, 239, 354
BsmAI GTCTC 1 cut(s) 344
BsnI GGCC 1 cut(s) 395
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 2 cut(s) 43, 207
BspANI GGCC 1 cut(s) 395
BspCNI CTCAG 1 cut(s) 311
BssECI CCNNGG 2 cut(s) 21, 376
BssNI GRCGYC 1 cut(s) 305
BssT1I CCWWGG 1 cut(s) 21
Bst4CI ACNGT 2 cut(s) 95, 175
BstACI GRCGYC 1 cut(s) 305
BstBAI YACGTR 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 298
BstDSI CCRYGG 2 cut(s) 21, 376
BstF5I GGATG 1 cut(s) 327
BstMAI GTCTC 1 cut(s) 344
BstMWI GCNNNNNNNGC 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 235
BsuRI GGCC 1 cut(s) 395
BtgI CCRYGG 2 cut(s) 21, 376
BtsCI GGATG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 393
Csp6I GTAC 1 cut(s) 7
CviAII CATG 1 cut(s) 22
CviJI RGCY 6 cut(s) 18, 29, 124, 250, 384, 395
CviKI_1 RGCY 6 cut(s) 18, 29, 124, 250, 384, 395
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 1 cut(s) 298
DrdI GACNNNNNNGTC 1 cut(s) 139
DseDI GACNNNNNNGTC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 1 cut(s) 25
FaiI YATR 2 cut(s) 23, 317
FatI CATG 1 cut(s) 21
FblI GTMKAC 1 cut(s) 308
Fnu4HI GCNGC 1 cut(s) 208
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 208
FspBI CTAG 1 cut(s) 164
GluI GCNGC 1 cut(s) 208
GsaI CCCAGC 1 cut(s) 394
HaeIII GGCC 1 cut(s) 395
HapII CCGG 1 cut(s) 204
Hin1I GRCGYC 1 cut(s) 305
Hin1II CATG 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 382
HinfI GANTC 3 cut(s) 86, 140, 221
HpaII CCGG 1 cut(s) 204
Hpy166II GTNNAC 2 cut(s) 98, 309
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 2 cut(s) 225, 341
Hpy8I GTNNAC 2 cut(s) 98, 309
Hpy99I CGWCG 1 cut(s) 307
HpyAV CCTTC 3 cut(s) 58, 104, 348
HpyCH4III ACNGT 2 cut(s) 95, 175
HpyCH4IV ACGT 3 cut(s) 9, 305, 311
HpyCH4V TGCA 2 cut(s) 4, 364
HpyF10VI GCNNNNNNNGC 1 cut(s) 381
HpyF3I CTNAG 1 cut(s) 298
HpySE526I ACGT 3 cut(s) 9, 305, 311
Hsp92I GRCGYC 1 cut(s) 305
Hsp92II CATG 1 cut(s) 25
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 6 cut(s) 157, 210, 217, 260, 335, 376
LweI GCATC 1 cut(s) 219
MaeI CTAG 1 cut(s) 164
MaeII ACGT 3 cut(s) 9, 305, 311
MboII GAAGA 2 cut(s) 70, 240
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 6 cut(s) 64, 145, 169, 211, 299, 341
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 381
NciI CCSGG 1 cut(s) 204
NcoI CCATGG 1 cut(s) 21
NlaIII CATG 1 cut(s) 25
PfeI GAWTC 2 cut(s) 86, 221
PkrI GCNGC 1 cut(s) 209
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
Ppu21I YACGTR 1 cut(s) 10
PspFI CCCAGC 1 cut(s) 390
PspPI GGNCC 1 cut(s) 393
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SatI GCNGC 1 cut(s) 208
Sau96I GGNCC 1 cut(s) 393
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 204
SetI ASST 6 cut(s) 12, 20, 137, 308, 314, 386
SfaNI GCATC 1 cut(s) 219
SsiI CCGC 2 cut(s) 43, 207
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 202
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 95, 175
TaiI ACGT 3 cut(s) 12, 308, 314
TaqI TCGA 1 cut(s) 342
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 2 cut(s) 86, 221
TscAI CASTG 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 304
TspRI CASTG 1 cut(s) 88
XmiI GTMKAC 1 cut(s) 308
XspI CTAG 1 cut(s) 164
ZraI GACGTC 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.