Rh6DG320900

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000723
Physical Location & Seq
Reverse (-)
52460050 .. 52460595
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG320900.1

Sequence Viewer

Length: 546 bp
ATGTATTCTCCCACAAATACATGGATCGGCATGGACATTGAGAGCATCAAGAAAAAGTTGTTCAAGATAGCCATGAAAAGCCAATGGGAAGAAATTGTCCAAGCATATAGGCAAGAGAAGCGGGTTCGCGAGGTAAAGATCACCAGGTCAGGTGACACGGCATTGCACATAGCGGTGTTAGATGGCCAAGAGGAACGTGTTGAAGAACTAGTAAACCTGGTTTCCAAAGAGGAGCTGGAACTCCAAAACGTGCGAGGGAATACCCCTCTCCATTTCGCTGCAGCACAGGGGAATGTGAGAATGTGCACATGCATTGCGAAAGGTCATCCTTCTTTGGTTGGTATTCTCAACAAAGATAAAGAGACGCCTCTCTTCTTGGCTGCTCTCCATGGTAAAAAAGATGCCTTCTTGTGTCTCCACTACATTTGTACTCCTGACAAGTCTCCTCCAAACTACAATTACTGTAGGAGGGAAGATGGAGAGACTACTATCTTGCATTGTGCAATTGATGGGGACTACTTTGGTAATTATAAGCACTTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0000166 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006900 GO:0006901 GO:0006903 GO:0006915 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0006996 GO:0007154 GO:0007165 GO:0007166 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008625 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010469 GO:0010506 GO:0010508 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0010648 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012501 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017075 GO:0017076 GO:0017148 GO:0019222 GO:0019538 GO:0019905 GO:0022607 GO:0022898 GO:0023051 GO:0023052 GO:0023057 GO:0030162 GO:0030554 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032270 GO:0032409 GO:0032412 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0033194 GO:0033554 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034599 GO:0034762 GO:0034765 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042802 GO:0042981 GO:0043065 GO:0043066 GO:0043067 GO:0043068 GO:0043069 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043269 GO:0043280 GO:0043281 GO:0043412 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045862 GO:0046777 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061024 GO:0065003 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071447 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090114 GO:0097159 GO:0097190 GO:0097191 GO:0097367 GO:0099601 GO:0140096 GO:1900449 GO:1901265 GO:1901363 GO:1901564 GO:1901700 GO:1901701 GO:1902041 GO:1902042 GO:1904062 GO:2000112 GO:2000113 GO:2000116 GO:2000310 GO:2001056 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001257
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

181

Amino Acids

20.67

Weight (kDa)

7.04

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 31 - 105 6.6e-09 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 531
AccII CGCG 1 cut(s) 129
AciI CCGC 2 cut(s) 121, 173
AclWI GGATC 1 cut(s) 32
AcoI YGGCCR 1 cut(s) 184
AcyI GRCGYC 1 cut(s) 365
AfaI GTAC 1 cut(s) 430
AflIII ACRYGT 1 cut(s) 196
AgsI TTSAA 2 cut(s) 64, 203
AhlI ACTAGT 1 cut(s) 208
AjnI CCWGG 2 cut(s) 143, 216
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Alw21I GWGCWC 1 cut(s) 308
Alw26I GTCTC 4 cut(s) 356, 419, 447, 476
Alw44I GTGCAC 1 cut(s) 304
AlwI GGATC 1 cut(s) 32
AoxI GGCC 1 cut(s) 184
ApaLI GTGCAC 1 cut(s) 304
ApeKI GCWGC 3 cut(s) 278, 281, 380
AsuHPI GGTGA 2 cut(s) 133, 164
BaeGI GKGCMC 1 cut(s) 308
BalI TGGCCA 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 308
BbvI GCAGC 3 cut(s) 265, 293, 367
BccI CCATC 3 cut(s) 176, 470, 503
BceAI ACGGC 1 cut(s) 174
BciT130I CCWGG 2 cut(s) 145, 218
BcoDI GTCTC 4 cut(s) 356, 419, 447, 476
BcuI ACTAGT 1 cut(s) 208
BfaI CTAG 1 cut(s) 209
BfmI CTRYAG 2 cut(s) 279, 463
BisI GCNGC 3 cut(s) 279, 282, 381
BlsI GCNGC 3 cut(s) 280, 283, 382
Bme1390I CCNGG 2 cut(s) 145, 218
BmrFI CCNGG 2 cut(s) 145, 218
BmsI GCATC 2 cut(s) 54, 391
BsaHI GRCGYC 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 388
Bse3DI GCAATG 2 cut(s) 161, 312
BseBI CCWGG 2 cut(s) 145, 218
BseDI CCNNGG 1 cut(s) 388
BseGI GGATG 1 cut(s) 325
BseMI GCAATG 2 cut(s) 161, 312
BseRI GAGGAG 2 cut(s) 245, 435
BseSI GKGCMC 1 cut(s) 308
BseXI GCAGC 3 cut(s) 265, 293, 367
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 308
BslFI GGGAC 1 cut(s) 527
BsmAI GTCTC 4 cut(s) 356, 419, 447, 476
BsmBI CGTCTC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 527
BsnI GGCC 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 308
Bsp143I GATC 2 cut(s) 24, 138
Bsp19I CCATGG 1 cut(s) 388
Bsp68I TCGCGA 1 cut(s) 129
BspACI CCGC 2 cut(s) 121, 173
BspANI GGCC 1 cut(s) 186
BspFNI CGCG 1 cut(s) 129
BspMAI CTGCAG 1 cut(s) 283
BspPI GGATC 1 cut(s) 32
BsrDI GCAATG 2 cut(s) 161, 312
BssECI CCNNGG 1 cut(s) 388
BssMI GATC 2 cut(s) 24, 138
BssNI GRCGYC 1 cut(s) 365
BssT1I CCWWGG 1 cut(s) 388
Bst2UI CCWGG 2 cut(s) 145, 218
Bst4CI ACNGT 1 cut(s) 464
Bst6I CTCTTC 1 cut(s) 377
BstACI GRCGYC 1 cut(s) 365
BstDSI CCRYGG 1 cut(s) 388
BstF5I GGATG 1 cut(s) 325
BstFNI CGCG 1 cut(s) 129
BstKTI GATC 2 cut(s) 27, 141
BstMAI GTCTC 4 cut(s) 356, 419, 447, 476
BstMBI GATC 2 cut(s) 24, 138
BstMWI GCNNNNNNNGC 1 cut(s) 118
BstNI CCWGG 2 cut(s) 145, 218
BstNSI RCATGY 1 cut(s) 312
BstSCI CCNGG 2 cut(s) 143, 216
BstSFI CTRYAG 2 cut(s) 279, 463
BstSLI GKGCMC 1 cut(s) 308
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 3 cut(s) 265, 293, 367
BsuRI GGCC 1 cut(s) 186
BtgI CCRYGG 1 cut(s) 388
BtsCI GGATG 1 cut(s) 325
BtuMI TCGCGA 1 cut(s) 129
CseI GACGC 1 cut(s) 373
CsiI ACCWGGT 2 cut(s) 143, 216
Csp6I GTAC 1 cut(s) 429
CspCI CAANNNNNGTGG 2 cut(s) 407, 442
CviAII CATG 5 cut(s) 21, 31, 73, 309, 389
CviJI RGCY 5 cut(s) 71, 81, 186, 235, 380
CviKI_1 RGCY 5 cut(s) 71, 81, 186, 235, 380
CviQI GTAC 1 cut(s) 429
DpnI GATC 2 cut(s) 26, 140
DpnII GATC 2 cut(s) 24, 138
EaeI YGGCCR 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 388
EcoRII CCWGG 2 cut(s) 143, 216
EcoT14I CCWWGG 1 cut(s) 388
EcoT22I ATGCAT 1 cut(s) 314
ErhI CCWWGG 1 cut(s) 388
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 5 cut(s) 24, 34, 76, 312, 392
FaiI YATR 9 cut(s) 22, 32, 74, 106, 108, 170, 310, 390, 531
FaqI GGGAC 1 cut(s) 527
FatI CATG 5 cut(s) 20, 30, 72, 308, 388
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 3 cut(s) 279, 282, 381
FokI GGATG 1 cut(s) 312
Fsp4HI GCNGC 3 cut(s) 279, 282, 381
FspBI CTAG 1 cut(s) 209
GluI GCNGC 3 cut(s) 279, 282, 381
HaeIII GGCC 1 cut(s) 186
HgaI GACGC 1 cut(s) 373
Hin1I GRCGYC 1 cut(s) 365
Hin1II CATG 5 cut(s) 24, 34, 76, 312, 392
HphI GGTGA 2 cut(s) 133, 164
Hpy166II GTNNAC 2 cut(s) 214, 306
Hpy188III TCNNGA 4 cut(s) 49, 64, 128, 434
Hpy8I GTNNAC 2 cut(s) 214, 306
HpyAV CCTTC 2 cut(s) 339, 415
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4IV ACGT 2 cut(s) 196, 249
HpyCH4V TGCA 6 cut(s) 166, 281, 306, 312, 496, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 118
HpySE526I ACGT 2 cut(s) 196, 249
Hsp92I GRCGYC 1 cut(s) 365
Hsp92II CATG 5 cut(s) 24, 34, 76, 312, 392
Kzo9I GATC 2 cut(s) 24, 138
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 8 cut(s) 130, 135, 157, 203, 221, 230, 272, 447
Lsp1109I GCAGC 3 cut(s) 265, 293, 367
LweI GCATC 2 cut(s) 54, 391
MabI ACCWGGT 2 cut(s) 143, 216
MaeI CTAG 1 cut(s) 209
MaeII ACGT 2 cut(s) 196, 249
MaeIII GTNAC 1 cut(s) 152
MalI GATC 2 cut(s) 26, 140
MboI GATC 2 cut(s) 24, 138
MboII GAAGA 4 cut(s) 101, 215, 364, 485
MfeI CAATTG 1 cut(s) 504
MhlI GDGCHC 1 cut(s) 308
MlsI TGGCCA 1 cut(s) 186
MluCI AATT 5 cut(s) 93, 457, 504, 526, 541
MluNI TGGCCA 1 cut(s) 186
MnlI CCTC 8 cut(s) 124, 184, 223, 248, 276, 378, 456, 462
Mox20I TGGCCA 1 cut(s) 186
Mph1103I ATGCAT 1 cut(s) 314
MscI TGGCCA 1 cut(s) 186
MseI TTAA 2 cut(s) 540, 544
MslI CAYNNNNRTG 1 cut(s) 173
Msp20I TGGCCA 1 cut(s) 186
MspR9I CCNGG 2 cut(s) 145, 218
MunI CAATTG 1 cut(s) 504
MvaI CCWGG 2 cut(s) 145, 218
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 118
NcoI CCATGG 1 cut(s) 388
NdeII GATC 2 cut(s) 24, 138
NlaIII CATG 5 cut(s) 24, 34, 76, 312, 392
NmuCI GTSAC 1 cut(s) 152
NruI TCGCGA 1 cut(s) 129
NsiI ATGCAT 1 cut(s) 314
NspI RCATGY 1 cut(s) 312
PacI TTAATTAA 1 cut(s) 544
PkrI GCNGC 3 cut(s) 280, 283, 382
PsiI TTATAA 1 cut(s) 531
Psp6I CCWGG 2 cut(s) 143, 216
PspGI CCWGG 2 cut(s) 143, 216
PstI CTGCAG 1 cut(s) 283
RruI TCGCGA 1 cut(s) 129
RsaI GTAC 1 cut(s) 430
RsaNI GTAC 1 cut(s) 429
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 2 cut(s) 540, 544
SatI GCNGC 3 cut(s) 279, 282, 381
Sau3AI GATC 2 cut(s) 24, 138
ScrFI CCNGG 2 cut(s) 145, 218
SduI GDGCHC 1 cut(s) 308
SetI ASST 8 cut(s) 135, 149, 154, 199, 219, 237, 252, 325
SexAI ACCWGGT 2 cut(s) 143, 216
SfaNI GCATC 2 cut(s) 54, 391
SfcI CTRYAG 2 cut(s) 279, 463
SmiMI CAYNNNNRTG 1 cut(s) 173
SpeI ACTAGT 1 cut(s) 208
Sse9I AATT 5 cut(s) 93, 457, 504, 526, 541
SsiI CCGC 2 cut(s) 121, 173
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 143, 216
StyI CCWWGG 1 cut(s) 388
TaaI ACNGT 1 cut(s) 464
TaiI ACGT 2 cut(s) 199, 252
TasI AATT 5 cut(s) 93, 457, 504, 526, 541
TatI WGTACW 1 cut(s) 428
Tru1I TTAA 2 cut(s) 540, 544
Tru9I TTAA 2 cut(s) 540, 544
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 3 cut(s) 278, 281, 380
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 1 cut(s) 89
VneI GTGCAC 1 cut(s) 304
XceI RCATGY 1 cut(s) 312
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
XspI CTAG 1 cut(s) 209
Zsp2I ATGCAT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.