Rh6CG333800

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000723
Physical Location & Seq
Reverse (-)
52231534 .. 52231911
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG333800.1

Sequence Viewer

Length: 378 bp
ATGGAAGCCCACTTCTTTTTCCGCTACAATAGGGATAACAAGAAGGCAGAGGACATCTTCACTGAATCCCACAGTAAACTCGTCCAAGAAGGGGTGGAGTGGCTCTCCAAGACCTCCGAGTCCTGCCCCCTTATTGCCTCCCTAGTCGCCACCGTGTCGTTTGCGACAGCAACCACCATTCCCGGCGGCATCAAAGAGGAATCTGGAAGACCAATCTTGGGAAACCAGCCACCCTTTGAAGTGTCTGCTATCTCATCACTTCTTGCCCTCTGCTTCTCAGCGACGTCTACGTTCATATTCCTGTCCATCCTCTCTTGTCTCGATACCAACAGAAGGATTTTGCATTGGAAGTGCCGTGGAAGCTTTTGCTGGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0000166 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006900 GO:0006901 GO:0006903 GO:0006915 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0006996 GO:0007154 GO:0007165 GO:0007166 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008625 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010469 GO:0010506 GO:0010508 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0010648 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012501 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017075 GO:0017076 GO:0017148 GO:0019222 GO:0019538 GO:0019905 GO:0022607 GO:0022898 GO:0023051 GO:0023052 GO:0023057 GO:0030162 GO:0030554 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032270 GO:0032409 GO:0032412 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0033194 GO:0033554 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034599 GO:0034762 GO:0034765 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042802 GO:0042981 GO:0043065 GO:0043066 GO:0043067 GO:0043068 GO:0043069 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043269 GO:0043280 GO:0043281 GO:0043412 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045862 GO:0046777 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061024 GO:0065003 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071447 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090114 GO:0097159 GO:0097190 GO:0097191 GO:0097367 GO:0099601 GO:0140096 GO:1900449 GO:1901265 GO:1901363 GO:1901564 GO:1901700 GO:1901701 GO:1902041 GO:1902042 GO:1904062 GO:2000112 GO:2000113 GO:2000116 GO:2000310 GO:2001056 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001257
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

125

Amino Acids

13.91

Weight (kDa)

6.81

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 33 - 116 1.6e-17 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 118
AatII GACGTC 1 cut(s) 287
AccI GTMKAC 1 cut(s) 287
AciI CCGC 2 cut(s) 22, 186
AcyI GRCGYC 1 cut(s) 284
AfiI CCNNNNNNNGG 3 cut(s) 91, 218, 333
AgsI TTSAA 1 cut(s) 239
AluBI AGCT 1 cut(s) 363
AluI AGCT 1 cut(s) 363
Alw26I GTCTC 1 cut(s) 323
AoxI GGCC 1 cut(s) 372
AspS9I GGNCC 1 cut(s) 372
AsuC2I CCSGG 1 cut(s) 183
BbsI GAAGAC 1 cut(s) 214
BccI CCATC 1 cut(s) 314
BceAI ACGGC 1 cut(s) 339
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 323
BfaI CTAG 1 cut(s) 143
BisI GCNGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 372
BmrFI CCNGG 1 cut(s) 183
BmsI GCATC 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 214
BplI GAGNNNNNCTC 2 cut(s) 89, 121
BpuMI CCSGG 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 218, 333
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 1 cut(s) 306
BseLI CCNNNNNNNGG 3 cut(s) 91, 218, 333
BseMII CTCAG 1 cut(s) 291
BseYI CCCAGC 1 cut(s) 369
BshFI GGCC 1 cut(s) 374
BsiSI CCGG 1 cut(s) 183
BslI CCNNNNNNNGG 3 cut(s) 91, 218, 333
BsmAI GTCTC 1 cut(s) 323
BsnI GGCC 1 cut(s) 374
BspACI CCGC 2 cut(s) 22, 186
BspANI GGCC 1 cut(s) 374
BspCNI CTCAG 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 355
BssNI GRCGYC 1 cut(s) 284
Bst4CI ACNGT 2 cut(s) 74, 154
BstACI GRCGYC 1 cut(s) 284
BstDEI CTNAG 1 cut(s) 277
BstDSI CCRYGG 1 cut(s) 355
BstF5I GGATG 1 cut(s) 306
BstMAI GTCTC 1 cut(s) 323
BstMWI GCNNNNNNNGC 1 cut(s) 360
BstSCI CCNGG 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 214
BsuRI GGCC 1 cut(s) 374
BtgI CCRYGG 1 cut(s) 355
BtsCI GGATG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 372
CviJI RGCY 5 cut(s) 8, 103, 229, 363, 374
CviKI_1 RGCY 5 cut(s) 8, 103, 229, 363, 374
DdeI CTNAG 1 cut(s) 277
DrdI GACNNNNNNGTC 1 cut(s) 118
DseDI GACNNNNNNGTC 1 cut(s) 118
FaiI YATR 1 cut(s) 296
FblI GTMKAC 1 cut(s) 287
Fnu4HI GCNGC 1 cut(s) 187
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 1 cut(s) 187
FspBI CTAG 1 cut(s) 143
GluI GCNGC 1 cut(s) 187
GsaI CCCAGC 1 cut(s) 373
HaeIII GGCC 1 cut(s) 374
HapII CCGG 1 cut(s) 183
Hin1I GRCGYC 1 cut(s) 284
HindIII AAGCTT 1 cut(s) 361
HinfI GANTC 3 cut(s) 65, 119, 200
HpaII CCGG 1 cut(s) 183
Hpy166II GTNNAC 2 cut(s) 77, 288
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 2 cut(s) 204, 320
Hpy8I GTNNAC 2 cut(s) 77, 288
Hpy99I CGWCG 1 cut(s) 286
HpyAV CCTTC 3 cut(s) 37, 83, 327
HpyCH4III ACNGT 2 cut(s) 74, 154
HpyCH4IV ACGT 2 cut(s) 284, 290
HpyCH4V TGCA 1 cut(s) 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 360
HpyF3I CTNAG 1 cut(s) 277
HpySE526I ACGT 2 cut(s) 284, 290
Hsp92I GRCGYC 1 cut(s) 284
LpnPI CCDG 6 cut(s) 136, 189, 196, 239, 314, 355
LweI GCATC 1 cut(s) 198
MaeI CTAG 1 cut(s) 143
MaeII ACGT 2 cut(s) 284, 290
MboII GAAGA 2 cut(s) 49, 219
MlyI GAGTC 1 cut(s) 128
MnlI CCTC 6 cut(s) 43, 124, 148, 190, 278, 320
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 360
NciI CCSGG 1 cut(s) 183
PfeI GAWTC 2 cut(s) 65, 200
PkrI GCNGC 1 cut(s) 188
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 369
PspPI GGNCC 1 cut(s) 372
SatI GCNGC 1 cut(s) 187
Sau96I GGNCC 1 cut(s) 372
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 183
SetI ASST 4 cut(s) 116, 287, 293, 365
SfaNI GCATC 1 cut(s) 198
SsiI CCGC 2 cut(s) 22, 186
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 181
TaaI ACNGT 2 cut(s) 74, 154
TaiI ACGT 2 cut(s) 287, 293
TaqI TCGA 1 cut(s) 321
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 2 cut(s) 65, 200
TscAI CASTG 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 283
TspRI CASTG 1 cut(s) 67
XmiI GTMKAC 1 cut(s) 287
XspI CTAG 1 cut(s) 143
ZraI GACGTC 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.