Rh6DG319400

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000723
Physical Location & Seq
Reverse (-)
52213331 .. 52213564
234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG319400.1

Sequence Viewer

Length: 234 bp
ATGTCTTATTTGATCGGCATGGATAGTGAGAGCATCAAGAAATACTTGTTCAACATAGCCATGAAAAGCAAATGGGAAGAAGTTGTCCAAGCATATAGGCAAAACAACCTGGCACGCAAGGCAAGGATCACCAAGTCAGGTGACACAGCATTGCACGTAGCAGTATCGGACGGCCAAGAGGAACTTGTTGAGAAACTAGTAAGGCTGGTTTCCAAAAAGGAGCTGGAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0000166 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006900 GO:0006901 GO:0006903 GO:0006915 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0006996 GO:0007154 GO:0007165 GO:0007166 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008625 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010469 GO:0010506 GO:0010508 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0010648 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012501 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017075 GO:0017076 GO:0017148 GO:0019222 GO:0019538 GO:0019905 GO:0022607 GO:0022898 GO:0023051 GO:0023052 GO:0023057 GO:0030162 GO:0030554 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032270 GO:0032409 GO:0032412 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0033194 GO:0033554 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034599 GO:0034762 GO:0034765 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042802 GO:0042981 GO:0043065 GO:0043066 GO:0043067 GO:0043068 GO:0043069 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043269 GO:0043280 GO:0043281 GO:0043412 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045862 GO:0046777 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061024 GO:0065003 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071447 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090114 GO:0097159 GO:0097190 GO:0097191 GO:0097367 GO:0099601 GO:0140096 GO:1900449 GO:1901265 GO:1901363 GO:1901564 GO:1901700 GO:1901701 GO:1902041 GO:1902042 GO:1904062 GO:2000112 GO:2000113 GO:2000116 GO:2000310 GO:2001056 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001257
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

77

Amino Acids

8.83

Weight (kDa)

8.96

Isoelectric Point (pI)

35.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 134
AcoI YGGCCR 1 cut(s) 172
AgsI TTSAA 1 cut(s) 52
AhlI ACTAGT 1 cut(s) 196
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
AlwI GGATC 1 cut(s) 134
AoxI GGCC 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 121, 152
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 110
BcuI ACTAGT 1 cut(s) 196
BfaI CTAG 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 1 cut(s) 42
BsaAI YACGTR 1 cut(s) 157
Bse3DI GCAATG 1 cut(s) 149
BseBI CCWGG 1 cut(s) 110
BseMI GCAATG 1 cut(s) 149
BshFI GGCC 1 cut(s) 174
BsnI GGCC 1 cut(s) 174
Bsp143I GATC 2 cut(s) 12, 126
BspANI GGCC 1 cut(s) 174
BspPI GGATC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 149
BssMI GATC 2 cut(s) 12, 126
Bst2UI CCWGG 1 cut(s) 110
BstBAI YACGTR 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 115
BstKTI GATC 2 cut(s) 15, 129
BstMBI GATC 2 cut(s) 12, 126
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 108
BsuRI GGCC 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 115
CviAII CATG 2 cut(s) 19, 61
CviJI RGCY 4 cut(s) 59, 174, 205, 223
CviKI_1 RGCY 4 cut(s) 59, 174, 205, 223
DpnI GATC 2 cut(s) 14, 128
DpnII GATC 2 cut(s) 12, 126
EaeI YGGCCR 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 108
FaeI CATG 2 cut(s) 22, 64
FaiI YATR 5 cut(s) 20, 56, 62, 94, 96
FalI AAGNNNNNCTT 4 cut(s) 29, 61, 168, 200
FatI CATG 2 cut(s) 18, 60
FspBI CTAG 1 cut(s) 197
HaeIII GGCC 1 cut(s) 174
Hin1II CATG 2 cut(s) 22, 64
HphI GGTGA 2 cut(s) 121, 152
Hpy188I TCNGA 2 cut(s) 169, 233
Hpy188III TCNNGA 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 2 cut(s) 22, 64
Kzo9I GATC 2 cut(s) 12, 126
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 5 cut(s) 95, 122, 123, 191, 209
LweI GCATC 1 cut(s) 42
MaeI CTAG 1 cut(s) 197
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 140
MalI GATC 2 cut(s) 14, 128
MboI GATC 2 cut(s) 12, 126
MboII GAAGA 1 cut(s) 89
MnlI CCTC 1 cut(s) 172
MslI CAYNNNNRTG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeII GATC 2 cut(s) 12, 126
NlaIII CATG 2 cut(s) 22, 64
NmuCI GTSAC 1 cut(s) 140
Ppu21I YACGTR 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 59
Sau3AI GATC 2 cut(s) 12, 126
ScrFI CCNGG 1 cut(s) 110
SetI ASST 4 cut(s) 111, 142, 159, 225
SfaNI GCATC 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 59
SpeI ACTAGT 1 cut(s) 196
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 108
TaiI ACGT 1 cut(s) 159
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 77
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.