Rh6DG319100

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000723
Physical Location & Seq
Reverse (-)
52165722 .. 52166784
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG319100.1

Sequence Viewer

Length: 864 bp
ATGTCTTCTGCCACAAATACCATGACCGGAATGGACAGTGAGAGCATGGACAGTGTTAGCATGGACAGTGAGAGCATCAAGAAAAAGTTGTTCCAGACAGCCATGAAAAGCCAATGGGAAGAAATTGTCCGAGAATATAGGCAAAACAAGCAGGCTCACAAGGCAAGGATCACCAAGTCAGCTGACACGGCATTGCACATAGCAGTGTTAGATGGCCAAGAGGAATGTGTTGAAGAACTAGTAAACCTGGTTTCCATAGAGGAGCTGAAACTCCAAAACGAGCGAGGGAATACCCCTCTCCATTTCGCTGCAGCACAGGGGAATGTGAGAATGTGCAACTGCATTGCCAAAGGTCGTCCTTCTTTGGTTGGTATTCTCAACAAAGATAAAGAGACGCCTCTCTTCTTGGCTGCTCTCCATGGTAAAAAAGATGCCTTCTTGTGTCTCCACTACATTTGTACTCCTGACAAGTCTTCTCCAAACTACAATTACTGTCGGAGGGAAGATGGAGAGACTATCTTGCATTGTGCTATTGATGGGGACTACTTTGATTTGGCATTTCAGATAATAGCTCTGTATAAAGATCTAGTTAATTATGTTAATGAAGCTGGGTTTTCCCCTCTCCATCTTCTGGCGAGTAAGCCTTCCGCTTTCAAAAGTGGTAGCCACCTTAGACCTTGGAGCATAATCATTTACCACTGTATATTGGTCGATGAGCTGAAGGTGGAAGAAGAACGTCACTTCCGTCAGCGGGTAATTAATACAATTAACTCTGAAAAGGCTCCAAAATACCCAGAAAACTACAAAACCTGCATCAACTTCTTGCTAGTGATCTGGAAGATGGCTCAAGCATTAGGTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0000166 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006900 GO:0006901 GO:0006903 GO:0006915 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0006996 GO:0007154 GO:0007165 GO:0007166 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008625 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010469 GO:0010506 GO:0010508 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0010648 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012501 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017075 GO:0017076 GO:0017148 GO:0019222 GO:0019538 GO:0019905 GO:0022607 GO:0022898 GO:0023051 GO:0023052 GO:0023057 GO:0030162 GO:0030554 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032270 GO:0032409 GO:0032412 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0033194 GO:0033554 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034599 GO:0034762 GO:0034765 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042802 GO:0042981 GO:0043065 GO:0043066 GO:0043067 GO:0043068 GO:0043069 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043269 GO:0043280 GO:0043281 GO:0043412 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045862 GO:0046777 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061024 GO:0065003 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071447 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090114 GO:0097159 GO:0097190 GO:0097191 GO:0097367 GO:0099601 GO:0140096 GO:1900449 GO:1901265 GO:1901363 GO:1901564 GO:1901700 GO:1901701 GO:1902041 GO:1902042 GO:1904062 GO:2000112 GO:2000113 GO:2000116 GO:2000310 GO:2001056 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001257
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

287

Amino Acids

32.57

Weight (kDa)

6.56

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 41 - 116 1.2e-09 Ankyrin repeats (3 copies)
Ank_4 PF13637 65 - 112 3.2e-07 Ankyrin repeats (many copies)
Ank_2 PF12796 87 - 149 6.3e-07 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 818
AccB7I CCANNNNNTGG 1 cut(s) 631
AciI CCGC 2 cut(s) 648, 751
AclWI GGATC 1 cut(s) 176
AcoI YGGCCR 1 cut(s) 214
AcuI CTGAAG 1 cut(s) 740
AcyI GRCGYC 1 cut(s) 395
AfaI GTAC 1 cut(s) 460
AfiI CCNNNNNNNGG 2 cut(s) 631, 751
AgsI TTSAA 2 cut(s) 233, 655
AhlI ACTAGT 1 cut(s) 238
AjnI CCWGG 1 cut(s) 246
AloI GAACNNNNNNTCC 2 cut(s) 726, 758
AluBI AGCT 5 cut(s) 182, 265, 572, 608, 718
AluI AGCT 5 cut(s) 182, 265, 572, 608, 718
Alw26I GTCTC 3 cut(s) 386, 449, 506
AlwI GGATC 1 cut(s) 176
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 3 cut(s) 308, 311, 410
AseI ATTAAT 1 cut(s) 759
AsuHPI GGTGA 1 cut(s) 163
BalI TGGCCA 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 465
BbvI GCAGC 3 cut(s) 295, 323, 397
BccI CCATC 5 cut(s) 206, 500, 530, 633, 835
BceAI ACGGC 1 cut(s) 204
BciT130I CCWGG 1 cut(s) 248
BcoDI GTCTC 3 cut(s) 386, 449, 506
BcuI ACTAGT 1 cut(s) 238
BfaI CTAG 3 cut(s) 239, 587, 827
BfmI CTRYAG 1 cut(s) 309
BfuAI ACCTGC 1 cut(s) 818
BglII AGATCT 1 cut(s) 583
BisI GCNGC 3 cut(s) 309, 312, 411
BlsI GCNGC 3 cut(s) 310, 313, 412
Bme1390I CCNGG 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 783
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 3 cut(s) 84, 421, 822
BpiI GAAGAC 1 cut(s) 465
BpuEI CTTGAG 1 cut(s) 831
BsaHI GRCGYC 1 cut(s) 395
BsaJI CCNNGG 2 cut(s) 418, 677
BsaWI WCCGGW 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 631, 751
Bse3DI GCAATG 2 cut(s) 191, 342
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 2 cut(s) 418, 677
BseLI CCNNNNNNNGG 2 cut(s) 631, 751
BseMI GCAATG 2 cut(s) 191, 342
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 3 cut(s) 295, 323, 397
BseYI CCCAGC 1 cut(s) 608
BshFI GGCC 1 cut(s) 216
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 2 cut(s) 631, 751
BsmAI GTCTC 3 cut(s) 386, 449, 506
BsmBI CGTCTC 1 cut(s) 386
BsmFI GGGAC 1 cut(s) 554
BsnI GGCC 1 cut(s) 216
Bsp143I GATC 3 cut(s) 168, 583, 831
Bsp19I CCATGG 1 cut(s) 418
BspACI CCGC 2 cut(s) 648, 751
BspANI GGCC 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 783
BspMAI CTGCAG 1 cut(s) 313
BspMI ACCTGC 1 cut(s) 818
BspPI GGATC 1 cut(s) 176
BsrDI GCAATG 2 cut(s) 191, 342
BssECI CCNNGG 2 cut(s) 418, 677
BssMI GATC 3 cut(s) 168, 583, 831
BssNI GRCGYC 1 cut(s) 395
BssT1I CCWWGG 2 cut(s) 418, 677
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 5 cut(s) 38, 53, 68, 494, 701
Bst6I CTCTTC 1 cut(s) 407
BstACI GRCGYC 1 cut(s) 395
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 671
BstDSI CCRYGG 1 cut(s) 418
BstKTI GATC 3 cut(s) 171, 586, 834
BstMAI GTCTC 3 cut(s) 386, 449, 506
BstMBI GATC 3 cut(s) 168, 583, 831
BstMWI GCNNNNNNNGC 3 cut(s) 148, 161, 188
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 1 cut(s) 309
BstV1I GCAGC 3 cut(s) 295, 323, 397
BstV2I GAAGAC 1 cut(s) 465
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
BsuRI GGCC 1 cut(s) 216
BtgI CCRYGG 1 cut(s) 418
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 5 cut(s) 43, 58, 73, 210, 697
BveI ACCTGC 1 cut(s) 818
Cac8I GCNNGC 1 cut(s) 153
CseI GACGC 1 cut(s) 403
CsiI ACCWGGT 1 cut(s) 246
Csp6I GTAC 1 cut(s) 459
CspCI CAANNNNNGTGG 2 cut(s) 437, 472
CviAII CATG 5 cut(s) 22, 46, 61, 103, 419
CviQI GTAC 1 cut(s) 459
DdeI CTNAG 1 cut(s) 671
DpnI GATC 3 cut(s) 170, 585, 833
DpnII GATC 3 cut(s) 168, 583, 831
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Eco130I CCWWGG 2 cut(s) 418, 677
Eco57I CTGAAG 1 cut(s) 740
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 2 cut(s) 418, 677
ErhI CCWWGG 2 cut(s) 418, 677
Esp3I CGTCTC 1 cut(s) 386
FaeI CATG 5 cut(s) 25, 49, 64, 106, 422
FaqI GGGAC 1 cut(s) 554
FatI CATG 5 cut(s) 21, 45, 60, 102, 418
FauI CCCGC 1 cut(s) 744
Fnu4HI GCNGC 3 cut(s) 309, 312, 411
Fsp4HI GCNGC 3 cut(s) 309, 312, 411
FspBI CTAG 3 cut(s) 239, 587, 827
GluI GCNGC 3 cut(s) 309, 312, 411
GsaI CCCAGC 1 cut(s) 612
HaeIII GGCC 1 cut(s) 216
HapII CCGG 1 cut(s) 27
HgaI GACGC 1 cut(s) 403
Hin1I GRCGYC 1 cut(s) 395
Hin1II CATG 5 cut(s) 25, 49, 64, 106, 422
HpaII CCGG 1 cut(s) 27
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 4 cut(s) 131, 498, 564, 775
Hpy188III TCNNGA 4 cut(s) 79, 94, 464, 835
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 4 cut(s) 369, 445, 654, 715
HpyCH4III ACNGT 5 cut(s) 38, 53, 68, 494, 701
HpyCH4IV ACGT 1 cut(s) 736
HpyCH4V TGCA 6 cut(s) 196, 311, 336, 342, 523, 813
HpyF10VI GCNNNNNNNGC 3 cut(s) 148, 161, 188
HpyF3I CTNAG 1 cut(s) 671
HpySE526I ACGT 1 cut(s) 736
Hsp92I GRCGYC 1 cut(s) 395
Hsp92II CATG 5 cut(s) 25, 49, 64, 106, 422
Kzo9I GATC 3 cut(s) 168, 583, 831
LmnI GCTCC 3 cut(s) 262, 681, 787
Lsp1109I GCAGC 3 cut(s) 295, 323, 397
LweI GCATC 3 cut(s) 84, 421, 822
MabI ACCWGGT 1 cut(s) 246
MaeI CTAG 3 cut(s) 239, 587, 827
MaeII ACGT 1 cut(s) 736
MaeIII GTNAC 1 cut(s) 737
MalI GATC 3 cut(s) 170, 585, 833
MboI GATC 3 cut(s) 168, 583, 831
MboII GAAGA 9 cut(s) 131, 245, 394, 465, 515, 620, 740, 743, 850
MflI RGATCY 1 cut(s) 583
MlsI TGGCCA 1 cut(s) 216
MluCI AATT 5 cut(s) 123, 487, 592, 756, 765
MluNI TGGCCA 1 cut(s) 216
MmeI TCCRAC 1 cut(s) 476
MnlI CCTC 7 cut(s) 214, 253, 278, 306, 408, 492, 630
Mox20I TGGCCA 1 cut(s) 216
MscI TGGCCA 1 cut(s) 216
MseI TTAA 4 cut(s) 591, 600, 759, 768
MslI CAYNNNNRTG 1 cut(s) 203
Msp20I TGGCCA 1 cut(s) 216
MspA1I CMGCKG 2 cut(s) 182, 751
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 3 cut(s) 148, 161, 188
NcoI CCATGG 1 cut(s) 418
NdeII GATC 3 cut(s) 168, 583, 831
NlaIII CATG 5 cut(s) 25, 49, 64, 106, 422
NlaIV GGNNCC 1 cut(s) 783
NmuCI GTSAC 1 cut(s) 737
PcsI WCGNNNNNNNCGW 1 cut(s) 742
PflMI CCANNNNNTGG 1 cut(s) 631
PkrI GCNGC 3 cut(s) 310, 313, 412
PshBI ATTAAT 1 cut(s) 759
Psp6I CCWGG 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 608
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 783
PstI CTGCAG 1 cut(s) 313
PsuI RGATCY 1 cut(s) 583
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
RseI CAYNNNNRTG 1 cut(s) 203
SaqAI TTAA 4 cut(s) 591, 600, 759, 768
SatI GCNGC 3 cut(s) 309, 312, 411
Sau3AI GATC 3 cut(s) 168, 583, 831
ScrFI CCNGG 1 cut(s) 248
SexAI ACCWGGT 1 cut(s) 246
SfaNI GCATC 3 cut(s) 84, 421, 822
SfcI CTRYAG 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 846
SmoI CTYRAG 1 cut(s) 846
SpeI ACTAGT 1 cut(s) 238
Sse9I AATT 5 cut(s) 123, 487, 592, 756, 765
SsiI CCGC 2 cut(s) 648, 751
SspMI CTAG 3 cut(s) 239, 587, 827
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 2 cut(s) 418, 677
TaaI ACNGT 5 cut(s) 38, 53, 68, 494, 701
TaiI ACGT 1 cut(s) 739
TaqI TCGA 1 cut(s) 711
TasI AATT 5 cut(s) 123, 487, 592, 756, 765
TatI WGTACW 1 cut(s) 458
Tru1I TTAA 4 cut(s) 591, 600, 759, 768
Tru9I TTAA 4 cut(s) 591, 600, 759, 768
TscAI CASTG 5 cut(s) 43, 58, 73, 210, 704
TseFI GTSAC 1 cut(s) 737
TseI GCWGC 3 cut(s) 308, 311, 410
Tsp45I GTSAC 1 cut(s) 737
TspDTI ATGAA 2 cut(s) 119, 618
TspGWI ACGGA 1 cut(s) 734
TspRI CASTG 5 cut(s) 43, 58, 73, 210, 704
Van91I CCANNNNNTGG 1 cut(s) 631
VspI ATTAAT 1 cut(s) 759
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
XspI CTAG 3 cut(s) 239, 587, 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.