Rorug06G0209600

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000723
Physical Location & Seq
Reverse (-)
33377796 .. 33379219
1424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0209600.1

Sequence Viewer

Length: 609 bp
ATGGCAGCTGCTGCTAATAGGAGTACTAATTACAAGGCAGGCGGTAACGATGATGATCATGTTCAGCAAGTGAGGAACCAGCAAGTGCTAGCTAGAGACTACACAAGCGCCATTCCGGAGGAGACGGACATGTACTTGAACACGTCTATCATTAAGCTCAAAGTGCCTGCAGGAGAAGACTTCAAAGGATTGCCAATAGTGGGCTATGGAGTGTCAAAAGTTGTGGATTCTCAGCATCCGGAGTTCAAGGCAGGGGACTTGATTACTTTATCAGTTTGGGGTATAACAAAGTGGGAGGAGTACACTCTCATCACTAAGACAGAAAGCTTGTTCAAAATCAACCACACTGATGTACCCCTTTCCTACTACACTGGACTTCTCGTGCTACTCAACATGAGACTTCACGGCCTTATTGCCATGTGTGGCATGATTTCGCAATACAATTACGAGCAACACGAAGGGGTCACCAACTTGATGCATCTGATTTACAAGCTCATTCATATGGAAGGCTTCTTCATGTTTGATTTCTACCATCTCTACCCTAAGTTCTTGGACCTGGTGGTGCCTTACATCAAGGAAGGGAAGATCGCCTATGTGGAGGACATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0000166 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006900 GO:0006901 GO:0006903 GO:0006915 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0006996 GO:0007154 GO:0007165 GO:0007166 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008625 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010469 GO:0010506 GO:0010508 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0010648 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012501 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017075 GO:0017076 GO:0017148 GO:0019222 GO:0019538 GO:0019905 GO:0022607 GO:0022898 GO:0023051 GO:0023052 GO:0023057 GO:0030162 GO:0030554 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032270 GO:0032409 GO:0032412 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0033194 GO:0033554 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034599 GO:0034762 GO:0034765 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042802 GO:0042981 GO:0043065 GO:0043066 GO:0043067 GO:0043068 GO:0043069 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043269 GO:0043280 GO:0043281 GO:0043412 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045862 GO:0046777 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061024 GO:0065003 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071447 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090114 GO:0097159 GO:0097190 GO:0097191 GO:0097367 GO:0099601 GO:0140096 GO:1900449 GO:1901265 GO:1901363 GO:1901564 GO:1901700 GO:1901701 GO:1902041 GO:1902042 GO:1904062 GO:2000112 GO:2000113 GO:2000116 GO:2000310 GO:2001056 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001257
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

202

Amino Acids

23.07

Weight (kDa)

5.56

Isoelectric Point (pI)

22.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 562
AccIII TCCGGA 2 cut(s) 115, 238
AciI CCGC 1 cut(s) 42
AfaI GTAC 4 cut(s) 25, 134, 302, 354
AfiI CCNNNNNNNGG 1 cut(s) 200
AflIII ACRYGT 2 cut(s) 129, 141
AgsI TTSAA 4 cut(s) 139, 184, 247, 334
AjiI CACGTC 1 cut(s) 144
AjnI CCWGG 1 cut(s) 555
AluBI AGCT 5 cut(s) 8, 92, 157, 327, 493
AluI AGCT 5 cut(s) 8, 92, 157, 327, 493
Alw26I GTCTC 3 cut(s) 90, 116, 391
AlwNI CAGNNNCTG 1 cut(s) 11
Aor13HI TCCGGA 2 cut(s) 115, 238
AoxI GGCC 1 cut(s) 406
ApeKI GCWGC 3 cut(s) 5, 8, 11
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 553
AsuHPI GGTGA 1 cut(s) 457
AsuNHI GCTAGC 1 cut(s) 88
AvaII GGWCC 1 cut(s) 553
BaeI ACNNNNGTAYC 2 cut(s) 336, 369
BanI GGYRCC 1 cut(s) 562
BauI CACGAG 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 540
BceAI ACGGC 1 cut(s) 421
BciT130I CCWGG 1 cut(s) 557
BclI TGATCA 1 cut(s) 55
BcoDI GTCTC 3 cut(s) 90, 116, 391
BfaI CTAG 2 cut(s) 89, 93
BfmI CTRYAG 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 111
BisI GCNGC 3 cut(s) 6, 9, 12
BlsI GCNGC 3 cut(s) 7, 10, 13
BmcAI AGTACT 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 557
Bme18I GGWCC 1 cut(s) 553
BmgBI CACGTC 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 553
BmiI GGNNCC 2 cut(s) 77, 564
BmrFI CCNGG 1 cut(s) 557
BmsI GCATC 3 cut(s) 244, 465, 487
BmtI GCTAGC 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 54
BsaWI WCCGGW 2 cut(s) 115, 238
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 376
Bse8I GATNNNNATC 1 cut(s) 54
BseAI TCCGGA 2 cut(s) 115, 238
BseBI CCWGG 1 cut(s) 557
BseGI GGATG 1 cut(s) 235
BseJI GATNNNNATC 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 2 cut(s) 134, 311
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 408
BshNI GGYRCC 1 cut(s) 562
BsiSI CCGG 2 cut(s) 116, 239
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 200
BsmAI GTCTC 3 cut(s) 90, 116, 391
BsmBI CGTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 269
BsnI GGCC 1 cut(s) 408
Bsp13I TCCGGA 2 cut(s) 115, 238
Bsp143I GATC 2 cut(s) 55, 585
BspACI CCGC 1 cut(s) 42
BspANI GGCC 1 cut(s) 408
BspCNI CTCAG 1 cut(s) 244
BspEI TCCGGA 2 cut(s) 115, 238
BspLI GGNNCC 2 cut(s) 77, 564
BspMAI CTGCAG 1 cut(s) 172
BspOI GCTAGC 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 562
BsrI ACTGG 1 cut(s) 376
BssMI GATC 2 cut(s) 55, 585
BssSI CACGAG 1 cut(s) 380
Bst2BI CACGAG 1 cut(s) 380
Bst2UI CCWGG 1 cut(s) 557
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 3 cut(s) 40, 90, 168
BstDEI CTNAG 3 cut(s) 231, 315, 543
BstEII GGTNACC 1 cut(s) 463
BstF5I GGATG 1 cut(s) 235
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 2 cut(s) 58, 588
BstMAI GTCTC 3 cut(s) 90, 116, 391
BstMBI GATC 2 cut(s) 55, 585
BstMWI GCNNNNNNNGC 2 cut(s) 11, 163
BstNI CCWGG 1 cut(s) 557
BstNSI RCATGY 1 cut(s) 133
BstPI GGTNACC 1 cut(s) 463
BstSCI CCNGG 1 cut(s) 555
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 408
BtrI CACGTC 1 cut(s) 144
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 2 cut(s) 345, 369
Cac8I GCNNGC 3 cut(s) 40, 90, 168
CaiI CAGNNNCTG 1 cut(s) 11
CfoI GCGC 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 553
CsiI ACCWGGT 1 cut(s) 555
Csp6I GTAC 4 cut(s) 24, 133, 301, 353
CspCI CAANNNNNGTGG 2 cut(s) 204, 239
CviAII CATG 6 cut(s) 59, 130, 394, 418, 427, 517
CviJI RGCY 8 cut(s) 8, 92, 157, 204, 327, 408, 493, 510
CviKI_1 RGCY 8 cut(s) 8, 92, 157, 204, 327, 408, 493, 510
CviQI GTAC 4 cut(s) 24, 133, 301, 353
DdeI CTNAG 3 cut(s) 231, 315, 543
DpnI GATC 2 cut(s) 57, 587
DpnII GATC 2 cut(s) 55, 585
Eco47I GGWCC 1 cut(s) 553
Eco91I GGTNACC 1 cut(s) 463
EcoO65I GGTNACC 1 cut(s) 463
EcoRII CCWGG 1 cut(s) 555
EcoT22I ATGCAT 1 cut(s) 480
Esp3I CGTCTC 1 cut(s) 116
FaeI CATG 6 cut(s) 62, 133, 397, 421, 430, 520
FaqI GGGAC 1 cut(s) 269
FatI CATG 6 cut(s) 58, 129, 393, 417, 426, 516
FauNDI CATATG 1 cut(s) 501
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 3 cut(s) 6, 9, 12
FokI GGATG 1 cut(s) 222
Fsp4HI GCNGC 3 cut(s) 6, 9, 12
FspBI CTAG 2 cut(s) 89, 93
GlaI GCGC 1 cut(s) 109
GluI GCNGC 3 cut(s) 6, 9, 12
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 1 cut(s) 408
HapII CCGG 2 cut(s) 116, 239
HhaI GCGC 1 cut(s) 110
Hin1II CATG 6 cut(s) 62, 133, 397, 421, 430, 520
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HindIII AAGCTT 1 cut(s) 325
HinfI GANTC 1 cut(s) 227
HpaII CCGG 2 cut(s) 116, 239
HphI GGTGA 1 cut(s) 457
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 1 cut(s) 483
Hpy188III TCNNGA 2 cut(s) 116, 239
Hpy8I GTNNAC 1 cut(s) 303
HpyAV CCTTC 3 cut(s) 452, 500, 572
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 2 cut(s) 170, 478
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 163
HpyF3I CTNAG 3 cut(s) 231, 315, 543
HpySE526I ACGT 1 cut(s) 143
Hsp92II CATG 6 cut(s) 62, 133, 397, 421, 430, 520
HspAI GCGC 1 cut(s) 108
Kpn2I TCCGGA 2 cut(s) 115, 238
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 2 cut(s) 55, 585
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 3 cut(s) 244, 465, 487
MabI ACCWGGT 1 cut(s) 555
MaeI CTAG 2 cut(s) 89, 93
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 2 cut(s) 44, 463
MalI GATC 2 cut(s) 57, 587
MboI GATC 2 cut(s) 55, 585
MboII GAAGA 3 cut(s) 188, 505, 595
MluCI AATT 2 cut(s) 28, 442
MnlI CCTC 4 cut(s) 66, 112, 289, 592
Mph1103I ATGCAT 1 cut(s) 480
MroI TCCGGA 2 cut(s) 115, 238
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 2 cut(s) 348, 500
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 2 cut(s) 116, 239
MspR9I CCNGG 1 cut(s) 557
MvaI CCWGG 1 cut(s) 557
MwoI GCNNNNNNNGC 2 cut(s) 11, 163
NdeI CATATG 1 cut(s) 501
NdeII GATC 2 cut(s) 55, 585
NheI GCTAGC 1 cut(s) 88
NlaIII CATG 6 cut(s) 62, 133, 397, 421, 430, 520
NlaIV GGNNCC 2 cut(s) 77, 564
NmuCI GTSAC 1 cut(s) 463
NsiI ATGCAT 1 cut(s) 480
NspI RCATGY 1 cut(s) 133
PciI ACATGT 1 cut(s) 129
PcsI WCGNNNNNNNCGW 1 cut(s) 453
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 3 cut(s) 7, 10, 13
PscI ACATGT 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 555
PspEI GGTNACC 1 cut(s) 463
PspGI CCWGG 1 cut(s) 555
PspN4I GGNNCC 2 cut(s) 77, 564
PspPI GGNCC 1 cut(s) 553
PstI CTGCAG 1 cut(s) 172
PstNI CAGNNNCTG 1 cut(s) 11
PvuII CAGCTG 1 cut(s) 8
RsaI GTAC 4 cut(s) 25, 134, 302, 354
RsaNI GTAC 4 cut(s) 24, 133, 301, 353
RseI CAYNNNNRTG 2 cut(s) 348, 500
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 3 cut(s) 6, 9, 12
Sau3AI GATC 2 cut(s) 55, 585
Sau96I GGNCC 1 cut(s) 553
SbfI CCTGCAGG 1 cut(s) 172
ScaI AGTACT 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 557
SdaI CCTGCAGG 1 cut(s) 172
SetI ASST 7 cut(s) 10, 94, 146, 159, 329, 495, 558
SexAI ACCWGGT 1 cut(s) 555
SfaNI GCATC 3 cut(s) 244, 465, 487
SfcI CTRYAG 1 cut(s) 168
SinI GGWCC 1 cut(s) 553
SmiMI CAYNNNNRTG 2 cut(s) 348, 500
Sse8387I CCTGCAGG 1 cut(s) 172
Sse9I AATT 2 cut(s) 28, 442
SsiI CCGC 1 cut(s) 42
SspMI CTAG 2 cut(s) 89, 93
StyD4I CCNGG 1 cut(s) 555
TaiI ACGT 1 cut(s) 146
TasI AATT 2 cut(s) 28, 442
TatI WGTACW 3 cut(s) 23, 132, 300
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 2 cut(s) 352, 376
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 3 cut(s) 5, 8, 11
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 2 cut(s) 488, 505
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 2 cut(s) 352, 376
VpaK11BI GGWCC 1 cut(s) 553
XceI RCATGY 1 cut(s) 133
XspI CTAG 2 cut(s) 89, 93
ZrmI AGTACT 1 cut(s) 25
Zsp2I ATGCAT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.