RLG00000012240

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000723
Physical Location & Seq
Reverse (-)
16531290 .. 16531868
579 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012240

Sequence Viewer

Length: 579 bp
ATGTCGTTCAACTTCTTCGTCTGCTACAACAAGGAAAGCCAAACCGCAAGGGACATCTTTACCAAAACCCACACCCAGATCGTCAAAGACGGCGACAATTGGTTGGCCAACACCTCCCAGTCTTGCTCCGTCGTTGCCGGCCTCATCGCCACTGTCGCCTTCGCCACTGTCTCTACCGTCCCCGGTGGCACCAAAGAGGACAACGGGGAGCCCACCCTCGAAAACCACCCGGCTTTCGACATCTTCGCCATCGCCTCTGTCGTCGCCCTTTGCTTCTCCGTCACGACAATGGTAATGTTCCTGGCCATTTTGACGTCACGGTATCAGGAGAGGGACTTCGGGAAAGCGCTGCCAAGGAAGCTCCTGTTTGGCCTGACGTCGCTGTTTTTGTCCATCGCTTCGATACTGATATCGTTTTGTGCCGGACACTTCTTCTTGCTCAAAGATAAGCTGAAATACGCGGTGTTTCCAGTTTATGCAATAACGTGTTTGCCGGTGTCGTTTTTCGCTATGGCGCACTTTCCGTTGTACGTTGATCTGGTGTGGGCTACGTTTAAGAAGGTGCCGCAGCGGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0000166 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006900 GO:0006901 GO:0006903 GO:0006915 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0006996 GO:0007154 GO:0007165 GO:0007166 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008625 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010469 GO:0010506 GO:0010508 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0010648 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012501 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017075 GO:0017076 GO:0017148 GO:0019222 GO:0019538 GO:0019905 GO:0022607 GO:0022898 GO:0023051 GO:0023052 GO:0023057 GO:0030162 GO:0030554 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032270 GO:0032409 GO:0032412 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0033194 GO:0033554 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034599 GO:0034762 GO:0034765 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042802 GO:0042981 GO:0043065 GO:0043066 GO:0043067 GO:0043068 GO:0043069 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043269 GO:0043280 GO:0043281 GO:0043412 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045862 GO:0046777 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061024 GO:0065003 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071447 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090114 GO:0097159 GO:0097190 GO:0097191 GO:0097367 GO:0099601 GO:0140096 GO:1900449 GO:1901265 GO:1901363 GO:1901564 GO:1901700 GO:1901701 GO:1902041 GO:1902042 GO:1904062 GO:2000112 GO:2000113 GO:2000116 GO:2000310 GO:2001056 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001257
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

193

Amino Acids

21.3

Weight (kDa)

8.6

Isoelectric Point (pI)

31.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 33 - 145 8.7e-28 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 317, 380
AccB1I GGYRCC 2 cut(s) 188, 562
AccII CGCG 1 cut(s) 461
AciI CCGC 4 cut(s) 45, 461, 566, 571
AcoI YGGCCR 2 cut(s) 105, 303
AcyI GRCGYC 2 cut(s) 314, 377
AfaI GTAC 1 cut(s) 530
AfeI AGCGCT 1 cut(s) 348
AflIII ACRYGT 1 cut(s) 485
AgsI TTSAA 1 cut(s) 10
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 2 cut(s) 361, 451
AluI AGCT 2 cut(s) 361, 451
Alw26I GTCTC 1 cut(s) 175
Aor51HI AGCGCT 1 cut(s) 348
AoxI GGCC 4 cut(s) 105, 139, 303, 370
ApeKI GCWGC 2 cut(s) 349, 568
AspLEI GCGC 2 cut(s) 349, 517
AsuC2I CCSGG 2 cut(s) 183, 230
BalI TGGCCA 2 cut(s) 107, 305
BanI GGYRCC 2 cut(s) 188, 562
BanII GRGCYC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 336
BccI CCATC 2 cut(s) 257, 401
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 302
BcnI CCSGG 2 cut(s) 183, 230
BcoDI GTCTC 1 cut(s) 175
BfoI RGCGCY 1 cut(s) 350
BisI GCNGC 3 cut(s) 350, 566, 569
BlsI GCNGC 3 cut(s) 351, 567, 570
Bme1390I CCNGG 3 cut(s) 183, 230, 302
BmiI GGNNCC 3 cut(s) 190, 210, 564
BmrFI CCNGG 3 cut(s) 183, 230, 302
BmrI ACTGGG 1 cut(s) 112
BmuI ACTGGG 1 cut(s) 112
BpuMI CCSGG 2 cut(s) 183, 230
BsaHI GRCGYC 2 cut(s) 314, 377
BsaJI CCNNGG 2 cut(s) 181, 353
Bse118I RCCGGY 2 cut(s) 137, 493
Bse1I ACTGG 2 cut(s) 118, 470
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 2 cut(s) 181, 353
BseNI ACTGG 2 cut(s) 118, 470
BseXI GCAGC 1 cut(s) 336
Bsh1236I CGCG 1 cut(s) 461
BshFI GGCC 4 cut(s) 107, 141, 305, 372
BshNI GGYRCC 2 cut(s) 188, 562
BsiSI CCGG 5 cut(s) 138, 183, 230, 423, 494
BslFI GGGAC 3 cut(s) 65, 164, 347
BsmAI GTCTC 1 cut(s) 175
BsmFI GGGAC 3 cut(s) 65, 164, 347
BsnI GGCC 4 cut(s) 107, 141, 305, 372
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 2 cut(s) 78, 535
BspACI CCGC 4 cut(s) 45, 461, 566, 571
BspANI GGCC 4 cut(s) 107, 141, 305, 372
BspFNI CGCG 1 cut(s) 461
BspLI GGNNCC 3 cut(s) 190, 210, 564
BspT107I GGYRCC 2 cut(s) 188, 562
BsrFI RCCGGY 2 cut(s) 137, 493
BsrI ACTGG 2 cut(s) 118, 470
BssAI RCCGGY 2 cut(s) 137, 493
BssECI CCNNGG 2 cut(s) 181, 353
BssMI GATC 2 cut(s) 78, 535
BssNI GRCGYC 2 cut(s) 314, 377
BssT1I CCWWGG 1 cut(s) 353
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 4 cut(s) 154, 169, 178, 321
BstACI GRCGYC 2 cut(s) 314, 377
BstC8I GCNNGC 1 cut(s) 139
BstFNI CGCG 1 cut(s) 461
BstH2I RGCGCY 1 cut(s) 350
BstHHI GCGC 2 cut(s) 349, 517
BstKTI GATC 2 cut(s) 81, 538
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 2 cut(s) 78, 535
BstMWI GCNNNNNNNGC 2 cut(s) 155, 358
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 3 cut(s) 181, 228, 300
BstUI CGCG 1 cut(s) 461
BstV1I GCAGC 1 cut(s) 336
BsuRI GGCC 4 cut(s) 107, 141, 305, 372
BtgZI GCGATG 3 cut(s) 130, 235, 379
BtsIMutI CAGTG 2 cut(s) 150, 165
Cac8I GCNNGC 1 cut(s) 139
CfoI GCGC 2 cut(s) 349, 517
Cfr10I RCCGGY 2 cut(s) 137, 493
Csp6I GTAC 1 cut(s) 529
CviQI GTAC 1 cut(s) 529
DpnI GATC 2 cut(s) 80, 537
DpnII GATC 2 cut(s) 78, 535
EaeI YGGCCR 2 cut(s) 105, 303
Eco130I CCWWGG 1 cut(s) 353
Eco24I GRGCYC 1 cut(s) 213
Eco32I GATATC 1 cut(s) 411
Eco47III AGCGCT 1 cut(s) 348
EcoRII CCWGG 1 cut(s) 300
EcoRV GATATC 1 cut(s) 411
EcoT14I CCWWGG 1 cut(s) 353
EcoT38I GRGCYC 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 353
FaiI YATR 2 cut(s) 477, 512
FaqI GGGAC 3 cut(s) 65, 164, 347
Fnu4HI GCNGC 3 cut(s) 350, 566, 569
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 3 cut(s) 350, 566, 569
GlaI GCGC 2 cut(s) 348, 516
GluI GCNGC 3 cut(s) 350, 566, 569
HaeII RGCGCY 1 cut(s) 350
HaeIII GGCC 4 cut(s) 107, 141, 305, 372
HapII CCGG 5 cut(s) 138, 183, 230, 423, 494
HhaI GCGC 2 cut(s) 349, 517
Hin1I GRCGYC 2 cut(s) 314, 377
Hin6I GCGC 2 cut(s) 347, 515
HinP1I GCGC 2 cut(s) 347, 515
HpaII CCGG 5 cut(s) 138, 183, 230, 423, 494
Hpy188III TCNNGA 3 cut(s) 283, 326, 340
Hpy99I CGWCG 3 cut(s) 134, 266, 382
HpyAV CCTTC 2 cut(s) 169, 553
HpyCH4III ACNGT 4 cut(s) 154, 169, 178, 321
HpyCH4IV ACGT 5 cut(s) 314, 377, 485, 531, 551
HpyCH4V TGCA 1 cut(s) 479
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 358
HpySE526I ACGT 5 cut(s) 314, 377, 485, 531, 551
Hsp92I GRCGYC 2 cut(s) 314, 377
HspAI GCGC 2 cut(s) 347, 515
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
Kzo9I GATC 2 cut(s) 78, 535
LmnI GCTCC 3 cut(s) 131, 208, 366
Lsp1109I GCAGC 1 cut(s) 336
MaeII ACGT 5 cut(s) 314, 377, 485, 531, 551
MaeIII GTNAC 2 cut(s) 280, 315
MalI GATC 2 cut(s) 80, 537
MboI GATC 2 cut(s) 78, 535
MboII GAAGA 3 cut(s) 7, 235, 424
MfeI CAATTG 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 213
MlsI TGGCCA 2 cut(s) 107, 305
MluCI AATT 1 cut(s) 97
MluNI TGGCCA 2 cut(s) 107, 305
MnlI CCTC 6 cut(s) 124, 152, 190, 227, 265, 324
Mox20I TGGCCA 2 cut(s) 107, 305
MroNI GCCGGC 1 cut(s) 137
MscI TGGCCA 2 cut(s) 107, 305
MseI TTAA 2 cut(s) 555, 577
MslI CAYNNNNRTG 1 cut(s) 287
Msp20I TGGCCA 2 cut(s) 107, 305
MspA1I CMGCKG 1 cut(s) 571
MspI CCGG 5 cut(s) 138, 183, 230, 423, 494
MspR9I CCNGG 3 cut(s) 183, 230, 302
MunI CAATTG 1 cut(s) 97
MvaI CCWGG 1 cut(s) 302
MvnI CGCG 1 cut(s) 461
MwoI GCNNNNNNNGC 2 cut(s) 155, 358
NaeI GCCGGC 1 cut(s) 139
NciI CCSGG 2 cut(s) 183, 230
NdeII GATC 2 cut(s) 78, 535
NgoMIV GCCGGC 1 cut(s) 137
NlaIV GGNNCC 3 cut(s) 190, 210, 564
NmuCI GTSAC 2 cut(s) 280, 315
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PdiI GCCGGC 1 cut(s) 139
PkrI GCNGC 3 cut(s) 351, 567, 570
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 3 cut(s) 190, 210, 564
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
RseI CAYNNNNRTG 1 cut(s) 287
SaqAI TTAA 2 cut(s) 555, 577
SatI GCNGC 3 cut(s) 350, 566, 569
Sau3AI GATC 2 cut(s) 78, 535
ScrFI CCNGG 3 cut(s) 183, 230, 302
SduI GDGCHC 1 cut(s) 213
SetI ASST 9 cut(s) 116, 317, 363, 380, 453, 488, 534, 554, 564
SmiMI CAYNNNNRTG 1 cut(s) 287
Sse9I AATT 1 cut(s) 97
SsiI CCGC 4 cut(s) 45, 461, 566, 571
StyD4I CCNGG 3 cut(s) 181, 228, 300
StyI CCWWGG 1 cut(s) 353
TaaI ACNGT 4 cut(s) 154, 169, 178, 321
TaiI ACGT 5 cut(s) 317, 380, 488, 534, 554
TaqI TCGA 3 cut(s) 219, 237, 401
TasI AATT 1 cut(s) 97
TauI GCSGC 1 cut(s) 568
Tru1I TTAA 2 cut(s) 555, 577
Tru9I TTAA 2 cut(s) 555, 577
TscAI CASTG 2 cut(s) 157, 172
TseFI GTSAC 2 cut(s) 280, 315
TseI GCWGC 2 cut(s) 349, 568
Tsp45I GTSAC 2 cut(s) 280, 315
TspGWI ACGGA 3 cut(s) 118, 268, 513
TspRI CASTG 2 cut(s) 157, 172
ZraI GACGTC 2 cut(s) 315, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.