Rorug06G0210100

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000723
Physical Location & Seq
Reverse (-)
33422503 .. 33423568
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0210100.1

Sequence Viewer

Length: 705 bp
ATGGCGCCAAATAGCCAAGCATCCGTAAATGGGGCCAAGTACCCTAACCCAACCATGAACAACCTCGACCTCGAGCACCAACCCACCCAAGACCTCAATACTTCCAAGGACAACGACGACTTCGACTACTCCAAACGCTCCCAGTGGCTCCGCGCCGCCGTCCTGGGAGCCAATGATGGCCTGATCTCCACCGCGTCGTTAATGATGGGTGTTGGTGCTGTTAAGCAGGACATTAAAGCCATGATACTAACCGGGTTCGCCGGACTAGTAGCCGGTGCCTGCAGCATGGCCATCGGAGAGTTTGTCTCTGTCTACTCCCAGTTGGACATAGAGGTGGCCCAAATGAAGAGAGACAACAAAAACAACAAGCAAAAAAGCCCGGTGGTACACTTGGTAGGAGACGAGGAGGGAGAAGAGAAGGAGAACTTGCCAAACCCGTTACAAGCAGCAGCTGCATCGGCTCTTGCGTTTTCAGTGGGAGCAATGGTACCACTGCTAGCAGCCTCGTTCATAAAGGAGTATGGGGCGAGGTTAGGAGCTGTGGCGGTGGCGGTGACATTGGCTTTGATGGTGTTTGGTTGGTTGGGAGCAGCTTTGGGGAAGGCACCAGTTCTGAGATCAACCGTTAGGGTTTTGGTTGGAGGGTGGATGGCTATGGCTATAACCTTTGGGCTAACCAAGTTGATTGGATCCAGTGGACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0000166 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006900 GO:0006901 GO:0006903 GO:0006915 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0006996 GO:0007154 GO:0007165 GO:0007166 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008625 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010469 GO:0010506 GO:0010508 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0010648 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012501 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017075 GO:0017076 GO:0017148 GO:0019222 GO:0019538 GO:0019905 GO:0022607 GO:0022898 GO:0023051 GO:0023052 GO:0023057 GO:0030162 GO:0030554 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032270 GO:0032409 GO:0032412 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0033194 GO:0033554 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034599 GO:0034762 GO:0034765 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042802 GO:0042981 GO:0043065 GO:0043066 GO:0043067 GO:0043068 GO:0043069 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043269 GO:0043280 GO:0043281 GO:0043412 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045862 GO:0046777 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061024 GO:0065003 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071447 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090114 GO:0097159 GO:0097190 GO:0097191 GO:0097367 GO:0099601 GO:0140096 GO:1900449 GO:1901265 GO:1901363 GO:1901564 GO:1901700 GO:1901701 GO:1902041 GO:1902042 GO:1904062 GO:2000112 GO:2000113 GO:2000116 GO:2000310 GO:2001056 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001257
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

234

Amino Acids

24.54

Weight (kDa)

6.12

Isoelectric Point (pI)

40.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VIT1 PF01988 50 - 124 3.6e-24 VIT family
VIT1 PF01988 124 - 226 3.7e-19 VIT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 487
AccB1I GGYRCC 4 cut(s) 4, 275, 487, 604
AccI GTMKAC 1 cut(s) 312
AccII CGCG 2 cut(s) 153, 194
AciI CCGC 5 cut(s) 151, 156, 192, 545, 551
AclWI GGATC 2 cut(s) 684, 697
AcoI YGGCCR 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 41, 387, 489
AfiI CCNNNNNNNGG 1 cut(s) 30
AhlI ACTAGT 1 cut(s) 265
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 3 cut(s) 452, 539, 593
AluI AGCT 3 cut(s) 452, 539, 593
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 3 cut(s) 310, 345, 393
AlwI GGATC 2 cut(s) 684, 697
AlwNI CAGNNNCTG 1 cut(s) 452
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 4 cut(s) 33, 178, 288, 336
ApeKI GCWGC 6 cut(s) 282, 446, 449, 452, 500, 590
ArsI GACNNNNNNTTYG 2 cut(s) 547, 579
Asp718I GGTACC 1 cut(s) 487
AspLEI GCGC 2 cut(s) 7, 155
AspS9I GGNCC 2 cut(s) 33, 337
AsuC2I CCSGG 2 cut(s) 253, 380
AsuHPI GGTGA 1 cut(s) 565
AsuNHI GCTAGC 1 cut(s) 496
AvaI CYCGRG 1 cut(s) 71
BalI TGGCCA 1 cut(s) 290
BamHI GGATCC 1 cut(s) 689
BanI GGYRCC 4 cut(s) 4, 275, 487, 604
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 6 cut(s) 294, 439, 458, 461, 512, 602
BccI CCATC 5 cut(s) 170, 199, 299, 562, 643
BceAI ACGGC 1 cut(s) 143
BcgI CGANNNNNNTGC 4 cut(s) 274, 308, 438, 472
BciT130I CCWGG 1 cut(s) 164
BcnI CCSGG 2 cut(s) 253, 380
BcoDI GTCTC 3 cut(s) 310, 345, 393
BcuI ACTAGT 1 cut(s) 265
BfaI CTAG 2 cut(s) 266, 497
BfmI CTRYAG 2 cut(s) 280, 701
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 7 cut(s) 156, 283, 447, 450, 453, 501, 591
BlsI GCNGC 7 cut(s) 157, 284, 448, 451, 454, 502, 592
Bme1390I CCNGG 3 cut(s) 164, 253, 380
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 2 cut(s) 33, 337
BmiI GGNNCC 8 cut(s) 6, 34, 149, 169, 277, 489, 606, 691
BmrFI CCNGG 3 cut(s) 164, 253, 380
BmrI ACTGGG 2 cut(s) 136, 313
BmsI GCATC 2 cut(s) 29, 464
BmtI GCTAGC 1 cut(s) 500
BmuI ACTGGG 2 cut(s) 136, 313
BplI GAGNNNNNCTC 2 cut(s) 290, 322
BpuMI CCSGG 2 cut(s) 253, 380
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 105, 163
BsaXI ACNNNNNCTCC 4 cut(s) 288, 318, 471, 501
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse118I RCCGGY 1 cut(s) 272
Bse1I ACTGG 4 cut(s) 142, 319, 608, 693
Bse3DI GCAATG 1 cut(s) 489
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 2 cut(s) 105, 163
BseGI GGATG 2 cut(s) 20, 654
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 1 cut(s) 605
BseNI ACTGG 4 cut(s) 142, 319, 608, 693
BseRI GAGGAG 1 cut(s) 419
BseXI GCAGC 6 cut(s) 294, 439, 458, 461, 512, 602
Bsh1236I CGCG 2 cut(s) 153, 194
BshFI GGCC 4 cut(s) 35, 180, 290, 338
BshNI GGYRCC 4 cut(s) 4, 275, 487, 604
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 4 cut(s) 252, 261, 273, 380
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 3 cut(s) 310, 345, 393
BsmBI CGTCTC 1 cut(s) 393
BsnI GGCC 4 cut(s) 35, 180, 290, 338
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 3 cut(s) 183, 617, 689
BspACI CCGC 5 cut(s) 151, 156, 192, 545, 551
BspANI GGCC 4 cut(s) 35, 180, 290, 338
BspCNI CTCAG 1 cut(s) 606
BspFNI CGCG 2 cut(s) 153, 194
BspLI GGNNCC 8 cut(s) 6, 34, 149, 169, 277, 489, 606, 691
BspMAI CTGCAG 1 cut(s) 284
BspOI GCTAGC 1 cut(s) 500
BspPI GGATC 2 cut(s) 684, 697
BspT107I GGYRCC 4 cut(s) 4, 275, 487, 604
BsrDI GCAATG 1 cut(s) 489
BsrFI RCCGGY 1 cut(s) 272
BsrI ACTGG 4 cut(s) 142, 319, 608, 693
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 2 cut(s) 105, 163
BssMI GATC 3 cut(s) 183, 617, 689
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 2 cut(s) 625, 702
Bst6I CTCTTC 2 cut(s) 341, 408
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 452
BstC8I GCNNGC 2 cut(s) 280, 498
BstDEI CTNAG 1 cut(s) 614
BstF5I GGATG 2 cut(s) 20, 654
BstFNI CGCG 2 cut(s) 153, 194
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 155
BstKTI GATC 3 cut(s) 186, 620, 692
BstMAI GTCTC 3 cut(s) 310, 345, 393
BstMBI GATC 3 cut(s) 183, 617, 689
BstMWI GCNNNNNNNGC 2 cut(s) 452, 458
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 3 cut(s) 162, 251, 378
BstSFI CTRYAG 2 cut(s) 280, 701
BstUI CGCG 2 cut(s) 153, 194
BstV1I GCAGC 6 cut(s) 294, 439, 458, 461, 512, 602
BstX2I RGATCY 1 cut(s) 689
BstYI RGATCY 1 cut(s) 689
BsuRI GGCC 4 cut(s) 35, 180, 290, 338
BtsCI GGATG 2 cut(s) 20, 654
BtsI GCAGTG 1 cut(s) 491
BtsIMutI CAGTG 4 cut(s) 149, 480, 491, 700
Cac8I GCNNGC 2 cut(s) 280, 498
CaiI CAGNNNCTG 1 cut(s) 452
CfoI GCGC 2 cut(s) 7, 155
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 2 cut(s) 33, 337
CseI GACGC 1 cut(s) 183
Csp6I GTAC 3 cut(s) 40, 386, 488
CviAII CATG 3 cut(s) 55, 241, 286
CviQI GTAC 3 cut(s) 40, 386, 488
DdeI CTNAG 1 cut(s) 614
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 185, 619, 691
DpnII GATC 3 cut(s) 183, 617, 689
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 2 cut(s) 341, 408
EarI CTCTTC 2 cut(s) 341, 408
Eco130I CCWWGG 1 cut(s) 105
Eco88I CYCGRG 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 105
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 105
Esp3I CGTCTC 1 cut(s) 393
FaeI CATG 3 cut(s) 58, 244, 289
FaiI YATR 8 cut(s) 56, 242, 287, 329, 512, 522, 656, 662
FalI AAGNNNNNCTT 2 cut(s) 410, 442
FatI CATG 3 cut(s) 54, 240, 285
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 7 cut(s) 156, 283, 447, 450, 453, 501, 591
FokI GGATG 2 cut(s) 7, 661
Fsp4HI GCNGC 7 cut(s) 156, 283, 447, 450, 453, 501, 591
FspBI CTAG 2 cut(s) 266, 497
GlaI GCGC 2 cut(s) 6, 154
GluI GCNGC 7 cut(s) 156, 283, 447, 450, 453, 501, 591
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 35, 180, 290, 338
HapII CCGG 4 cut(s) 252, 261, 273, 380
HgaI GACGC 1 cut(s) 183
HhaI GCGC 2 cut(s) 7, 155
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 58, 244, 289
Hin6I GCGC 2 cut(s) 5, 153
HinP1I GCGC 2 cut(s) 5, 153
HpaII CCGG 4 cut(s) 252, 261, 273, 380
HphI GGTGA 1 cut(s) 565
Hpy166II GTNNAC 3 cut(s) 313, 388, 698
Hpy188I TCNGA 2 cut(s) 296, 615
Hpy8I GTNNAC 3 cut(s) 313, 388, 698
Hpy99I CGWCG 2 cut(s) 119, 199
HpyAV CCTTC 2 cut(s) 412, 595
HpyCH4III ACNGT 2 cut(s) 625, 702
HpyCH4V TGCA 2 cut(s) 282, 455
HpyF10VI GCNNNNNNNGC 2 cut(s) 452, 458
HpyF3I CTNAG 1 cut(s) 614
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 58, 244, 289
HspAI GCGC 2 cut(s) 5, 153
KasI GGCGCC 1 cut(s) 4
KpnI GGTACC 1 cut(s) 491
Kzo9I GATC 3 cut(s) 183, 617, 689
LmnI GCTCC 6 cut(s) 143, 153, 167, 479, 536, 587
Lsp1109I GCAGC 6 cut(s) 294, 439, 458, 461, 512, 602
LweI GCATC 2 cut(s) 29, 464
MaeI CTAG 2 cut(s) 266, 497
MaeIII GTNAC 2 cut(s) 438, 553
MalI GATC 3 cut(s) 185, 619, 691
MboI GATC 3 cut(s) 183, 617, 689
MboII GAAGA 2 cut(s) 358, 425
MflI RGATCY 1 cut(s) 689
MhlI GDGCHC 1 cut(s) 78
MlsI TGGCCA 1 cut(s) 290
MluNI TGGCCA 1 cut(s) 290
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 303, 619
MnlI CCTC 9 cut(s) 74, 80, 104, 325, 397, 400, 514, 522, 635
Mox20I TGGCCA 1 cut(s) 290
MscI TGGCCA 1 cut(s) 290
MseI TTAA 3 cut(s) 200, 222, 234
MslI CAYNNNNRTG 1 cut(s) 332
Msp20I TGGCCA 1 cut(s) 290
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 4 cut(s) 252, 261, 273, 380
MspR9I CCNGG 3 cut(s) 164, 253, 380
MvaI CCWGG 1 cut(s) 164
MvnI CGCG 2 cut(s) 153, 194
MwoI GCNNNNNNNGC 2 cut(s) 452, 458
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 2 cut(s) 253, 380
NdeII GATC 3 cut(s) 183, 617, 689
NheI GCTAGC 1 cut(s) 496
NlaIII CATG 3 cut(s) 58, 244, 289
NlaIV GGNNCC 8 cut(s) 6, 34, 149, 169, 277, 489, 606, 691
NmuCI GTSAC 1 cut(s) 553
PaeR7I CTCGAG 1 cut(s) 71
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 464
PkrI GCNGC 7 cut(s) 157, 284, 448, 451, 454, 502, 592
PluTI GGCGCC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 8 cut(s) 6, 34, 149, 169, 277, 489, 606, 691
PspPI GGNCC 2 cut(s) 33, 337
PspXI VCTCGAGB 1 cut(s) 71
PstI CTGCAG 1 cut(s) 284
PstNI CAGNNNCTG 1 cut(s) 452
PsuI RGATCY 1 cut(s) 689
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 3 cut(s) 41, 387, 489
RsaNI GTAC 3 cut(s) 40, 386, 488
RseI CAYNNNNRTG 1 cut(s) 332
SaqAI TTAA 3 cut(s) 200, 222, 234
SatI GCNGC 7 cut(s) 156, 283, 447, 450, 453, 501, 591
Sau3AI GATC 3 cut(s) 183, 617, 689
Sau96I GGNCC 2 cut(s) 33, 337
ScrFI CCNGG 3 cut(s) 164, 253, 380
SduI GDGCHC 1 cut(s) 78
SetI ASST 9 cut(s) 66, 72, 96, 336, 454, 533, 541, 595, 668
SfaNI GCATC 2 cut(s) 29, 464
SfcI CTRYAG 2 cut(s) 280, 701
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 71
SlaI CTCGAG 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SpeI ACTAGT 1 cut(s) 265
SsiI CCGC 5 cut(s) 151, 156, 192, 545, 551
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 266, 497
StyD4I CCNGG 3 cut(s) 162, 251, 378
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 2 cut(s) 625, 702
TaqI TCGA 3 cut(s) 66, 72, 123
TauI GCSGC 1 cut(s) 158
Tru1I TTAA 3 cut(s) 200, 222, 234
Tru9I TTAA 3 cut(s) 200, 222, 234
TscAI CASTG 4 cut(s) 149, 480, 498, 700
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 6 cut(s) 282, 446, 449, 452, 500, 590
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 3 cut(s) 71, 359, 499
TspGWI ACGGA 1 cut(s) 13
TspRI CASTG 4 cut(s) 149, 480, 498, 700
XhoI CTCGAG 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 312
XspI CTAG 2 cut(s) 266, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.