Rh6DG319300

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000723
Physical Location & Seq
Reverse (-)
52200077 .. 52201165
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG319300.1

Sequence Viewer

Length: 667 bp
ATGTCTTCTGCCACAAATACCATGACCGGCATGGACAGTGACAGCATCAAGAAATACTTGTTCAACATAGCCATGAAAAGCCAATGGGAAGAAGTTGTCCAAGCATATAGGCAAAACAAGCGGGCTCACAAGGCAAGGATCACCAAGTCAGGTGACACAGCATTACACATAGCAGTGTCGGACGGCCAAGAGGAACATGTTGAGGAACTAGTAAAGCTAGTTTCCAAAAAGGAGCTGGAAATCCAAAATGAGCGAGGGAACACCCCTCTCCATTTGGCTGCAGCACAGGGGAATGTGAGAATGTGCAAGTGCATTGCCAAAGATCGTACTTTGGTTGGTATTCTCAACAACGATAAAGAGACCCCTCTCTTCTTGGCTGCTCTCCATGGTAAAAAAGATGCCTTCTTGTGTCTTCACTACATTTGTACTCCAGACAAGTCTCAGCCAAACTACAGTTACTGTAGGAGGGAGGATGGACAGACTATCTTGCATTGTGCAATTGCTGGGGACTACTTTGATTTGGCATTTCAGATAATAGCCCTGTATGAAGATCTAGTTAATTCTGTTAATGAAGATGGGTTTTCCCCTCTCCATCTTCTGGCGAGTAAGCCTTCCGCTTTCAAAAGTGGTAGCTACCTTAGACCTTGGAGCATAATCATTTACCACT
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0000166 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006900 GO:0006901 GO:0006903 GO:0006915 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0006996 GO:0007154 GO:0007165 GO:0007166 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008625 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010469 GO:0010506 GO:0010508 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0010648 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012501 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017075 GO:0017076 GO:0017148 GO:0019222 GO:0019538 GO:0019905 GO:0022607 GO:0022898 GO:0023051 GO:0023052 GO:0023057 GO:0030162 GO:0030554 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032270 GO:0032409 GO:0032412 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0033194 GO:0033554 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034599 GO:0034762 GO:0034765 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042802 GO:0042981 GO:0043065 GO:0043066 GO:0043067 GO:0043068 GO:0043069 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043269 GO:0043280 GO:0043281 GO:0043412 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045862 GO:0046777 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061024 GO:0065003 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071447 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090114 GO:0097159 GO:0097190 GO:0097191 GO:0097367 GO:0099601 GO:0140096 GO:1900449 GO:1901265 GO:1901363 GO:1901564 GO:1901700 GO:1901701 GO:1902041 GO:1902042 GO:1904062 GO:2000112 GO:2000113 GO:2000116 GO:2000310 GO:2001056 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001257
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

222

Amino Acids

24.96

Weight (kDa)

7.1

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 70 - 138 3e-09 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 598
AciI CCGC 2 cut(s) 121, 615
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 1 cut(s) 184
AfaI GTAC 2 cut(s) 328, 427
AfiI CCNNNNNNNGG 1 cut(s) 598
AflIII ACRYGT 1 cut(s) 196
AgsI TTSAA 2 cut(s) 64, 622
AhlI ACTAGT 1 cut(s) 208
AluBI AGCT 3 cut(s) 217, 235, 633
AluI AGCT 3 cut(s) 217, 235, 633
Alw26I GTCTC 2 cut(s) 353, 444
AlwI GGATC 1 cut(s) 146
AlwNI CAGNNNCTG 1 cut(s) 459
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 3 cut(s) 278, 281, 377
AsuHPI GGTGA 2 cut(s) 133, 164
BanII GRGCYC 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 404
BbvI GCAGC 3 cut(s) 265, 293, 364
BccI CCATC 3 cut(s) 467, 569, 600
BceAI ACGGC 1 cut(s) 199
BcoDI GTCTC 2 cut(s) 353, 444
BcuI ACTAGT 1 cut(s) 208
BfaI CTAG 3 cut(s) 209, 218, 554
BfmI CTRYAG 3 cut(s) 279, 451, 460
BglII AGATCT 1 cut(s) 550
BisI GCNGC 3 cut(s) 279, 282, 378
BlsI GCNGC 3 cut(s) 280, 283, 379
BmsI GCATC 2 cut(s) 54, 388
BpiI GAAGAC 1 cut(s) 404
BpmI CTGGAG 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 2 cut(s) 385, 644
Bsc4I CCNNNNNNNGG 1 cut(s) 598
Bse118I RCCGGY 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 385, 644
BseGI GGATG 1 cut(s) 478
BseLI CCNNNNNNNGG 1 cut(s) 598
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 1 cut(s) 455
BseXI GCAGC 3 cut(s) 265, 293, 364
BseYI CCCAGC 1 cut(s) 503
BshFI GGCC 1 cut(s) 186
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 521
BslI CCNNNNNNNGG 1 cut(s) 598
BsmAI GTCTC 2 cut(s) 353, 444
BsmFI GGGAC 1 cut(s) 521
BsnI GGCC 1 cut(s) 186
Bso31I GGTCTC 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 3 cut(s) 138, 322, 550
Bsp19I CCATGG 1 cut(s) 385
BspACI CCGC 2 cut(s) 121, 615
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 454
BspMAI CTGCAG 1 cut(s) 283
BspPI GGATC 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 312
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 2 cut(s) 385, 644
BssMI GATC 3 cut(s) 138, 322, 550
BssT1I CCWWGG 2 cut(s) 385, 644
Bst4CI ACNGT 3 cut(s) 38, 455, 461
Bst6I CTCTTC 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 441, 638
BstDSI CCRYGG 1 cut(s) 385
BstF5I GGATG 1 cut(s) 478
BstKTI GATC 3 cut(s) 141, 325, 553
BstMAI GTCTC 2 cut(s) 353, 444
BstMBI GATC 3 cut(s) 138, 322, 550
BstMWI GCNNNNNNNGC 2 cut(s) 118, 131
BstNSI RCATGY 1 cut(s) 200
BstSFI CTRYAG 3 cut(s) 279, 451, 460
BstV1I GCAGC 3 cut(s) 265, 293, 364
BstV2I GAAGAC 1 cut(s) 404
BstX2I RGATCY 1 cut(s) 550
BstYI RGATCY 1 cut(s) 550
BsuRI GGCC 1 cut(s) 186
BtgI CCRYGG 1 cut(s) 385
BtsCI GGATG 1 cut(s) 478
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 2 cut(s) 43, 180
Cac8I GCNNGC 1 cut(s) 123
CaiI CAGNNNCTG 1 cut(s) 459
Cfr10I RCCGGY 1 cut(s) 26
Csp6I GTAC 2 cut(s) 327, 426
CviAII CATG 5 cut(s) 22, 31, 73, 197, 386
CviQI GTAC 2 cut(s) 327, 426
DdeI CTNAG 2 cut(s) 441, 638
DpnI GATC 3 cut(s) 140, 324, 552
DpnII GATC 3 cut(s) 138, 322, 550
EaeI YGGCCR 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
Eco130I CCWWGG 2 cut(s) 385, 644
Eco24I GRGCYC 1 cut(s) 127
Eco31I GGTCTC 1 cut(s) 353
EcoT14I CCWWGG 2 cut(s) 385, 644
EcoT38I GRGCYC 1 cut(s) 127
ErhI CCWWGG 2 cut(s) 385, 644
FaeI CATG 5 cut(s) 25, 34, 76, 200, 389
FalI AAGNNNNNCTT 2 cut(s) 41, 73
FaqI GGGAC 1 cut(s) 521
FatI CATG 5 cut(s) 21, 30, 72, 196, 385
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 3 cut(s) 279, 282, 378
FokI GGATG 1 cut(s) 485
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 3 cut(s) 279, 282, 378
FspBI CTAG 3 cut(s) 209, 218, 554
GluI GCNGC 3 cut(s) 279, 282, 378
GsaI CCCAGC 1 cut(s) 507
GsuI CTGGAG 1 cut(s) 414
HaeIII GGCC 1 cut(s) 186
HapII CCGG 1 cut(s) 27
Hin1II CATG 5 cut(s) 25, 34, 76, 200, 389
HpaII CCGG 1 cut(s) 27
HphI GGTGA 2 cut(s) 133, 164
Hpy188I TCNGA 2 cut(s) 181, 531
Hpy188III TCNNGA 2 cut(s) 49, 431
HpyAV CCTTC 2 cut(s) 412, 621
HpyCH4III ACNGT 3 cut(s) 38, 455, 461
HpyCH4V TGCA 5 cut(s) 281, 306, 312, 490, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 131
HpyF3I CTNAG 2 cut(s) 441, 638
Hsp92II CATG 5 cut(s) 25, 34, 76, 200, 389
Kzo9I GATC 3 cut(s) 138, 322, 550
LmnI GCTCC 2 cut(s) 232, 648
LpnPI CCDG 8 cut(s) 40, 135, 221, 272, 444, 489, 554, 584
Lsp1109I GCAGC 3 cut(s) 265, 293, 364
LweI GCATC 2 cut(s) 54, 388
MaeI CTAG 3 cut(s) 209, 218, 554
MaeIII GTNAC 3 cut(s) 38, 152, 455
MalI GATC 3 cut(s) 140, 324, 552
MboI GATC 3 cut(s) 138, 322, 550
MboII GAAGA 6 cut(s) 101, 361, 404, 560, 584, 587
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 1 cut(s) 550
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 2 cut(s) 498, 559
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 8 cut(s) 184, 196, 248, 276, 375, 459, 463, 597
MseI TTAA 2 cut(s) 558, 567
MslI CAYNNNNRTG 2 cut(s) 71, 173
MspI CCGG 1 cut(s) 27
MunI CAATTG 1 cut(s) 498
MwoI GCNNNNNNNGC 2 cut(s) 118, 131
NcoI CCATGG 1 cut(s) 385
NdeII GATC 3 cut(s) 138, 322, 550
NlaIII CATG 5 cut(s) 25, 34, 76, 200, 389
NmuCI GTSAC 2 cut(s) 38, 152
NspI RCATGY 1 cut(s) 200
PciI ACATGT 1 cut(s) 196
PflMI CCANNNNNTGG 1 cut(s) 598
PkrI GCNGC 3 cut(s) 280, 283, 379
PscI ACATGT 1 cut(s) 196
PspFI CCCAGC 1 cut(s) 503
PstI CTGCAG 1 cut(s) 283
PstNI CAGNNNCTG 1 cut(s) 459
PsuI RGATCY 1 cut(s) 550
RsaI GTAC 2 cut(s) 328, 427
RsaNI GTAC 2 cut(s) 327, 426
RseI CAYNNNNRTG 2 cut(s) 71, 173
SaqAI TTAA 2 cut(s) 558, 567
SatI GCNGC 3 cut(s) 279, 282, 378
Sau3AI GATC 3 cut(s) 138, 322, 550
SduI GDGCHC 1 cut(s) 127
SetI ASST 6 cut(s) 154, 219, 237, 635, 639, 646
SfaNI GCATC 2 cut(s) 54, 388
SfcI CTRYAG 3 cut(s) 279, 451, 460
SmiMI CAYNNNNRTG 2 cut(s) 71, 173
SpeI ACTAGT 1 cut(s) 208
Sse9I AATT 2 cut(s) 498, 559
SsiI CCGC 2 cut(s) 121, 615
SspMI CTAG 3 cut(s) 209, 218, 554
StyI CCWWGG 2 cut(s) 385, 644
TaaI ACNGT 3 cut(s) 38, 455, 461
TasI AATT 2 cut(s) 498, 559
TatI WGTACW 1 cut(s) 425
Tru1I TTAA 2 cut(s) 558, 567
Tru9I TTAA 2 cut(s) 558, 567
TscAI CASTG 2 cut(s) 43, 180
TseFI GTSAC 2 cut(s) 38, 152
TseI GCWGC 3 cut(s) 278, 281, 377
Tsp45I GTSAC 2 cut(s) 38, 152
TspDTI ATGAA 3 cut(s) 89, 561, 585
TspRI CASTG 2 cut(s) 43, 180
Van91I CCANNNNNTGG 1 cut(s) 598
XceI RCATGY 1 cut(s) 200
XcmI CCANNNNNNNNNTGG 2 cut(s) 28, 232
XspI CTAG 3 cut(s) 209, 218, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.