Rh6DG319600

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000723
Physical Location & Seq
Reverse (-)
52278861 .. 52279873
1013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG319600.1

Sequence Viewer

Length: 819 bp
ATGTCTTCTGCCAGAAATACCATGACCGGCATGGACAGTGAGAGCATCAAGAAATACTTGTTCCAGACAGCCATGAAAAGCCAATGGGAAGAAGTTGTCCGAGCATATAGGCAAAACGAGCGGGCTCACAAGGCAAGGATCACCAAGTCAGGTGACACAGCATTGCACATGGCAGTGTCGGACGGCCAAGAGGAAGTTGTAGAGAAACTAGTAAAGCTGGTTTCCAGAGAGCAGCTGGAAATCCAAAATGAGCGAGGGAACACCCCTCTCCATTTTGCTGCAGCACAGGGGAATGTGAGAATGTGCGAATGCATTGCCAAAGGTCGTCCTTCTTTGGTTGGTATTCTCAACAAAGATAAAGAGACGCCTCTCTTCTTGGCTGCTCTTCATGGTAAAAAAGATGCCTTCTTGTGTCTCCACTACATTTGTACTCCTGACAAGTCTTCTCCAAACTACAATTACTGTCGGAGGGAAGATGGAGAGACTATCTTGCATTGTGCAATCGCTAGGGACTACTTTGATTTAGCATTTCAGATAATAGCCCTGTACAAGGATCTAGTTAATTATGTCAATGAAGTTGGGGTTTCCCCTCTCCATCTTCTGGCGAGAAAGCCTTCCGCCTTCAAAAGTGGTAGCTACCTCAGAAGTTGGGACATAATCAGTTACCATTTTACATTGGTCGATGAGCTGAAGGTGGAAAAAGCAGATCACTTCCATACAATTAACTTTGAAAAGGCTCCGAAGTACCCAGAAAACTACAAAACCTGCATCAACTTCTCGCTAGTGTTCTGGAAGATGGCTCAAGCATTAGGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0000166 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006900 GO:0006901 GO:0006903 GO:0006915 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0006996 GO:0007154 GO:0007165 GO:0007166 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008625 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010469 GO:0010506 GO:0010508 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0010648 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012501 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017075 GO:0017076 GO:0017148 GO:0019222 GO:0019538 GO:0019905 GO:0022607 GO:0022898 GO:0023051 GO:0023052 GO:0023057 GO:0030162 GO:0030554 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032270 GO:0032409 GO:0032412 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0033194 GO:0033554 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034599 GO:0034762 GO:0034765 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042802 GO:0042981 GO:0043065 GO:0043066 GO:0043067 GO:0043068 GO:0043069 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043269 GO:0043280 GO:0043281 GO:0043412 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045862 GO:0046777 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061024 GO:0065003 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071447 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090114 GO:0097159 GO:0097190 GO:0097191 GO:0097367 GO:0099601 GO:0140096 GO:1900449 GO:1901265 GO:1901363 GO:1901564 GO:1901700 GO:1901701 GO:1902041 GO:1902042 GO:1904062 GO:2000112 GO:2000113 GO:2000116 GO:2000310 GO:2001056 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001257
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

272

Amino Acids

31.08

Weight (kDa)

8.56

Isoelectric Point (pI)

33.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 46 - 105 1.1e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 73 - 138 1.2e-07 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 773
AccB7I CCANNNNNTGG 1 cut(s) 601
AccBSI CCGCTC 1 cut(s) 121
AciI CCGC 2 cut(s) 121, 618
AclWI GGATC 2 cut(s) 146, 561
AcoI YGGCCR 1 cut(s) 184
AcuI CTGAAG 1 cut(s) 710
AcyI GRCGYC 1 cut(s) 365
AfaI GTAC 3 cut(s) 430, 548, 746
AfiI CCNNNNNNNGG 2 cut(s) 550, 601
AgsI TTSAA 2 cut(s) 625, 731
AhlI ACTAGT 1 cut(s) 208
AluBI AGCT 4 cut(s) 217, 235, 636, 688
AluI AGCT 4 cut(s) 217, 235, 636, 688
Alw26I GTCTC 3 cut(s) 356, 419, 476
AlwI GGATC 2 cut(s) 146, 561
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 4 cut(s) 232, 278, 281, 380
Asp700I GAANNNNTTC 1 cut(s) 613
AsuHPI GGTGA 2 cut(s) 133, 164
BanII GRGCYC 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 435
BbvI GCAGC 4 cut(s) 244, 265, 293, 367
BccI CCATC 3 cut(s) 470, 603, 790
BceAI ACGGC 1 cut(s) 199
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BcoDI GTCTC 3 cut(s) 356, 419, 476
BcuI ACTAGT 1 cut(s) 208
BfaI CTAG 4 cut(s) 209, 507, 557, 782
BfmI CTRYAG 1 cut(s) 279
BfuAI ACCTGC 1 cut(s) 773
BisI GCNGC 4 cut(s) 233, 279, 282, 381
BlsI GCNGC 4 cut(s) 234, 280, 283, 382
BmiI GGNNCC 1 cut(s) 738
BmsI GCATC 3 cut(s) 54, 391, 777
BpiI GAAGAC 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 786
BsaHI GRCGYC 1 cut(s) 365
Bsc4I CCNNNNNNNGG 2 cut(s) 550, 601
Bse118I RCCGGY 1 cut(s) 26
Bse3DI GCAATG 2 cut(s) 161, 312
BseLI CCNNNNNNNGG 2 cut(s) 550, 601
BseMI GCAATG 2 cut(s) 161, 312
BseMII CTCAG 1 cut(s) 655
BseXI GCAGC 4 cut(s) 244, 265, 293, 367
BshFI GGCC 1 cut(s) 186
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 2 cut(s) 524, 665
BslI CCNNNNNNNGG 2 cut(s) 550, 601
BsmAI GTCTC 3 cut(s) 356, 419, 476
BsmBI CGTCTC 1 cut(s) 356
BsmFI GGGAC 2 cut(s) 524, 665
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 127
Bsp1407I TGTACA 1 cut(s) 546
Bsp143I GATC 3 cut(s) 138, 553, 706
BspACI CCGC 2 cut(s) 121, 618
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 654
BspLI GGNNCC 1 cut(s) 738
BspMAI CTGCAG 1 cut(s) 283
BspMI ACCTGC 1 cut(s) 773
BspPI GGATC 2 cut(s) 146, 561
BspQI GCTCTTC 1 cut(s) 390
BsrBI CCGCTC 1 cut(s) 121
BsrDI GCAATG 2 cut(s) 161, 312
BsrFI RCCGGY 1 cut(s) 26
BsrGI TGTACA 1 cut(s) 546
BssAI RCCGGY 1 cut(s) 26
BssMI GATC 3 cut(s) 138, 553, 706
BssNI GRCGYC 1 cut(s) 365
Bst4CI ACNGT 2 cut(s) 38, 464
Bst6I CTCTTC 2 cut(s) 377, 390
BstACI GRCGYC 1 cut(s) 365
BstAUI TGTACA 1 cut(s) 546
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 641
BstENI CCTNNNNNAGG 1 cut(s) 548
BstKTI GATC 3 cut(s) 141, 556, 709
BstMAI GTCTC 3 cut(s) 356, 419, 476
BstMBI GATC 3 cut(s) 138, 553, 706
BstMWI GCNNNNNNNGC 2 cut(s) 118, 131
BstSFI CTRYAG 1 cut(s) 279
BstV1I GCAGC 4 cut(s) 244, 265, 293, 367
BstV2I GAAGAC 1 cut(s) 435
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
BsuRI GGCC 1 cut(s) 186
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 2 cut(s) 43, 180
BveI ACCTGC 1 cut(s) 773
Cac8I GCNNGC 1 cut(s) 123
Cfr10I RCCGGY 1 cut(s) 26
CseI GACGC 1 cut(s) 373
Csp6I GTAC 3 cut(s) 429, 547, 745
CspCI CAANNNNNGTGG 2 cut(s) 407, 442
CviAII CATG 5 cut(s) 22, 31, 73, 169, 389
CviQI GTAC 3 cut(s) 429, 547, 745
DdeI CTNAG 1 cut(s) 641
DpnI GATC 3 cut(s) 140, 555, 708
DpnII GATC 3 cut(s) 138, 553, 706
EaeI YGGCCR 1 cut(s) 184
Eam1104I CTCTTC 2 cut(s) 377, 390
EarI CTCTTC 2 cut(s) 377, 390
EciI GGCGGA 1 cut(s) 607
Eco24I GRGCYC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 710
EcoNI CCTNNNNNAGG 1 cut(s) 548
EcoT22I ATGCAT 1 cut(s) 314
EcoT38I GRGCYC 1 cut(s) 127
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 5 cut(s) 25, 34, 76, 172, 392
FalI AAGNNNNNCTT 2 cut(s) 41, 73
FaqI GGGAC 2 cut(s) 524, 665
FatI CATG 5 cut(s) 21, 30, 72, 168, 388
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 4 cut(s) 233, 279, 282, 381
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 4 cut(s) 233, 279, 282, 381
FspBI CTAG 4 cut(s) 209, 507, 557, 782
GluI GCNGC 4 cut(s) 233, 279, 282, 381
HaeIII GGCC 1 cut(s) 186
HapII CCGG 1 cut(s) 27
HgaI GACGC 1 cut(s) 373
Hin1I GRCGYC 1 cut(s) 365
Hin1II CATG 5 cut(s) 25, 34, 76, 172, 392
HpaII CCGG 1 cut(s) 27
HphI GGTGA 2 cut(s) 133, 164
Hpy188I TCNGA 6 cut(s) 101, 181, 468, 534, 644, 741
Hpy188III TCNNGA 5 cut(s) 49, 64, 225, 434, 790
HpyAV CCTTC 5 cut(s) 339, 415, 624, 631, 685
HpyCH4III ACNGT 2 cut(s) 38, 464
HpyCH4V TGCA 6 cut(s) 166, 281, 312, 493, 500, 768
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 131
HpyF3I CTNAG 1 cut(s) 641
Hsp92I GRCGYC 1 cut(s) 365
Hsp92II CATG 5 cut(s) 25, 34, 76, 172, 392
Kzo9I GATC 3 cut(s) 138, 553, 706
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 1 cut(s) 742
Lsp1109I GCAGC 4 cut(s) 244, 265, 293, 367
LweI GCATC 3 cut(s) 54, 391, 777
MaeI CTAG 4 cut(s) 209, 507, 557, 782
MaeIII GTNAC 2 cut(s) 152, 662
MalI GATC 3 cut(s) 140, 555, 708
MbiI CCGCTC 1 cut(s) 121
MboI GATC 3 cut(s) 138, 553, 706
MboII GAAGA 7 cut(s) 101, 364, 377, 435, 485, 590, 805
MflI RGATCY 1 cut(s) 553
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 3 cut(s) 457, 562, 720
MmeI TCCRAC 2 cut(s) 159, 446
MnlI CCTC 7 cut(s) 184, 248, 276, 378, 462, 600, 650
Mph1103I ATGCAT 1 cut(s) 314
MroXI GAANNNNTTC 1 cut(s) 613
MseI TTAA 2 cut(s) 561, 723
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 235
MspI CCGG 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 314
MwoI GCNNNNNNNGC 2 cut(s) 118, 131
NdeII GATC 3 cut(s) 138, 553, 706
NlaIII CATG 5 cut(s) 25, 34, 76, 172, 392
NlaIV GGNNCC 1 cut(s) 738
NmuCI GTSAC 1 cut(s) 152
NsiI ATGCAT 1 cut(s) 314
PciSI GCTCTTC 1 cut(s) 390
PctI GAATGC 1 cut(s) 314
PdmI GAANNNNTTC 1 cut(s) 613
PflMI CCANNNNNTGG 1 cut(s) 601
PkrI GCNGC 4 cut(s) 234, 280, 283, 382
PspN4I GGNNCC 1 cut(s) 738
PstI CTGCAG 1 cut(s) 283
PsuI RGATCY 1 cut(s) 553
PvuII CAGCTG 1 cut(s) 235
RsaI GTAC 3 cut(s) 430, 548, 746
RsaNI GTAC 3 cut(s) 429, 547, 745
RseI CAYNNNNRTG 1 cut(s) 173
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 2 cut(s) 561, 723
SatI GCNGC 4 cut(s) 233, 279, 282, 381
Sau3AI GATC 3 cut(s) 138, 553, 706
SduI GDGCHC 1 cut(s) 127
SfaNI GCATC 3 cut(s) 54, 391, 777
SfcI CTRYAG 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 801
SmoI CTYRAG 1 cut(s) 801
SpeI ACTAGT 1 cut(s) 208
Sse9I AATT 3 cut(s) 457, 562, 720
SsiI CCGC 2 cut(s) 121, 618
SspMI CTAG 4 cut(s) 209, 507, 557, 782
TaaI ACNGT 2 cut(s) 38, 464
TaqI TCGA 1 cut(s) 681
TasI AATT 3 cut(s) 457, 562, 720
TatI WGTACW 2 cut(s) 428, 546
Tru1I TTAA 2 cut(s) 561, 723
Tru9I TTAA 2 cut(s) 561, 723
TscAI CASTG 2 cut(s) 43, 180
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 4 cut(s) 232, 278, 281, 380
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 3 cut(s) 89, 377, 588
TspRI CASTG 2 cut(s) 43, 180
Van91I CCANNNNNTGG 1 cut(s) 601
XagI CCTNNNNNAGG 1 cut(s) 548
XcmI CCANNNNNNNNNTGG 2 cut(s) 28, 232
XmnI GAANNNNTTC 1 cut(s) 613
XspI CTAG 4 cut(s) 209, 507, 557, 782
Zsp2I ATGCAT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.