pycom06g13370

Adenylate kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0001981
Physical Location & Seq
Forward (+)
18388545 .. 18389948
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 444 bp
ATGGCCGGCCTCGTCCGCCAAGACCTCAACCCTCGTTCTTCGCTTTACAAGCAGATTGCGAATGCTGTGAATCGAGGGGAGCTTGTTCCGGAAGAAATCATATTCGGGTTGTTATCGAAGAGATTGGAAGATGGGTATTGCAGAGGAGAAAGTGGATTTATACTGGATGGACTTCCTCGTTCTCGGATTCAAGCCGAAATTCTTTCCGAACTCGTTGAGATTGATCTAGTTGTGAATTTCAAATGCACAGAGCATTGCTTGGCAGAACACGAAAGAGAGGGTGCCTGGAGGGAGAAACTTCGAATCTTTGCTGAGCAGAGTAAGCTGCTGGAAGATTACTACAAGAAACGGGATAAGCTTCTCGACTTTCAAGTGAGTAGTGCACCCGGGGAGACTTGGAAGGGGCTGTTGGCTTCGTTACATCTACGCTCCTCCCTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130
Pfam Domains
Protein Families
ADK

Protein Analysis

148

Amino Acids

16.79

Weight (kDa)

5.96

Isoelectric Point (pI)

52.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADK PF00406 4 - 118 2.4e-17 Adenylate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 281
AccIII TCCGGA 1 cut(s) 88
AciI CCGC 1 cut(s) 16
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 198, 235
AgsI TTSAA 3 cut(s) 191, 241, 371
AjnI CCWGG 1 cut(s) 284
AjuI GAANNNNNNNTTGG 2 cut(s) 392, 424
AluBI AGCT 3 cut(s) 82, 325, 358
AluI AGCT 3 cut(s) 82, 325, 358
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 1 cut(s) 386
Alw44I GTGCAC 1 cut(s) 381
Ama87I CYCGRG 1 cut(s) 386
Aor13HI TCCGGA 1 cut(s) 88
AoxI GGCC 2 cut(s) 3, 7
ApaLI GTGCAC 1 cut(s) 381
ApeKI GCWGC 1 cut(s) 325
ApoI RAATTY 2 cut(s) 198, 235
AsuC2I CCSGG 2 cut(s) 387, 388
AsuII TTCGAA 1 cut(s) 301
AvaI CYCGRG 1 cut(s) 386
BaeGI GKGCMC 1 cut(s) 385
BanI GGYRCC 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 1 cut(s) 312
BccI CCATC 2 cut(s) 125, 161
BciT130I CCWGG 1 cut(s) 286
BcnI CCSGG 2 cut(s) 387, 388
BcoDI GTCTC 1 cut(s) 386
BfaI CTAG 1 cut(s) 227
BisI GCNGC 1 cut(s) 326
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 327
Bme1390I CCNGG 3 cut(s) 286, 387, 388
BmeT110I CYCGRG 1 cut(s) 386
BmiI GGNNCC 1 cut(s) 283
BmrFI CCNGG 3 cut(s) 286, 387, 388
BpmI CTGGAG 1 cut(s) 307
Bpu1102I GCTNAGC 1 cut(s) 312
Bpu14I TTCGAA 1 cut(s) 301
BpuMI CCSGG 2 cut(s) 387, 388
BsaJI CCNNGG 2 cut(s) 386, 387
BsaWI WCCGGW 1 cut(s) 88
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 168
Bse3DI GCAATG 1 cut(s) 253
BseAI TCCGGA 1 cut(s) 88
BseBI CCWGG 1 cut(s) 286
BseDI CCNNGG 2 cut(s) 386, 387
BseGI GGATG 1 cut(s) 172
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 1 cut(s) 168
BseRI GAGGAG 2 cut(s) 159, 421
BseSI GKGCMC 1 cut(s) 385
BseXI GCAGC 1 cut(s) 312
BshFI GGCC 2 cut(s) 5, 9
BshNI GGYRCC 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 385
BsiHKCI CYCGRG 1 cut(s) 386
BsiSI CCGG 3 cut(s) 6, 89, 387
BsmAI GTCTC 1 cut(s) 386
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 2 cut(s) 5, 9
BsoBI CYCGRG 1 cut(s) 386
Bsp119I TTCGAA 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 385
Bsp13I TCCGGA 1 cut(s) 88
Bsp143I GATC 1 cut(s) 223
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 1 cut(s) 16
BspANI GGCC 2 cut(s) 5, 9
BspCNI CTCAG 1 cut(s) 304
BspEI TCCGGA 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 283
BspT104I TTCGAA 1 cut(s) 301
BspT107I GGYRCC 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 253
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 1 cut(s) 168
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 2 cut(s) 386, 387
BssMI GATC 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 113
BstBI TTCGAA 1 cut(s) 301
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 312
BstF5I GGATG 1 cut(s) 172
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 3 cut(s) 15, 49, 322
BstNI CCWGG 1 cut(s) 286
BstSCI CCNGG 3 cut(s) 284, 385, 386
BstSLI GKGCMC 1 cut(s) 385
BstV1I GCAGC 1 cut(s) 312
BsuRI GGCC 2 cut(s) 5, 9
BtsCI GGATG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 5
Cfr9I CCCGGG 1 cut(s) 386
CviJI RGCY 8 cut(s) 5, 9, 82, 194, 325, 358, 406, 413
CviKI_1 RGCY 8 cut(s) 5, 9, 82, 194, 325, 358, 406, 413
DdeI CTNAG 1 cut(s) 312
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
EciI GGCGGA 1 cut(s) 5
Eco88I CYCGRG 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 284
FaiI YATR 2 cut(s) 101, 161
Fnu4HI GCNGC 1 cut(s) 326
FokI GGATG 1 cut(s) 179
FseI GGCCGGCC 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 326
FspBI CTAG 1 cut(s) 227
GluI GCNGC 1 cut(s) 326
GsuI CTGGAG 1 cut(s) 307
HaeIII GGCC 2 cut(s) 5, 9
HapII CCGG 3 cut(s) 6, 89, 387
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 3 cut(s) 70, 187, 303
HpaII CCGG 3 cut(s) 6, 89, 387
Hpy166II GTNNAC 1 cut(s) 383
Hpy188I TCNGA 2 cut(s) 186, 208
Hpy188III TCNNGA 2 cut(s) 89, 362
Hpy8I GTNNAC 1 cut(s) 383
HpyAV CCTTC 1 cut(s) 394
HpyCH4V TGCA 3 cut(s) 141, 246, 383
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 49, 322
HpyF3I CTNAG 1 cut(s) 312
Kpn2I TCCGGA 1 cut(s) 88
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Kzo9I GATC 1 cut(s) 223
LmnI GCTCC 2 cut(s) 79, 434
LpnPI CCDG 7 cut(s) 19, 102, 149, 271, 298, 314, 400
Lsp1109I GCAGC 1 cut(s) 312
MaeI CTAG 1 cut(s) 227
MaeIII GTNAC 1 cut(s) 417
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 5 cut(s) 30, 104, 130, 140, 344
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 2 cut(s) 198, 235
MnlI CCTC 9 cut(s) 20, 35, 42, 68, 137, 186, 271, 282, 442
MroI TCCGGA 1 cut(s) 88
MroNI GCCGGC 1 cut(s) 5
MspI CCGG 3 cut(s) 6, 89, 387
MspR9I CCNGG 3 cut(s) 286, 387, 388
Mva1269I GAATGC 1 cut(s) 67
MvaI CCWGG 1 cut(s) 286
MwoI GCNNNNNNNGC 3 cut(s) 15, 49, 322
NaeI GCCGGC 1 cut(s) 7
NciI CCSGG 2 cut(s) 387, 388
NdeII GATC 1 cut(s) 223
NgoMIV GCCGGC 1 cut(s) 5
NlaIV GGNNCC 1 cut(s) 283
NspV TTCGAA 1 cut(s) 301
PctI GAATGC 1 cut(s) 67
PdiI GCCGGC 1 cut(s) 7
PfeI GAWTC 3 cut(s) 70, 187, 303
PkrI GCNGC 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 283
RigI GGCCGGCC 1 cut(s) 9
SatI GCNGC 1 cut(s) 326
Sau3AI GATC 1 cut(s) 223
ScrFI CCNGG 3 cut(s) 286, 387, 388
SduI GDGCHC 1 cut(s) 385
SetI ASST 4 cut(s) 27, 84, 327, 360
SfuI TTCGAA 1 cut(s) 301
SmaI CCCGGG 1 cut(s) 388
Sse9I AATT 2 cut(s) 198, 235
SsiI CCGC 1 cut(s) 16
SspMI CTAG 1 cut(s) 227
StyD4I CCNGG 3 cut(s) 284, 385, 386
TaqI TCGA 4 cut(s) 73, 116, 301, 363
TasI AATT 2 cut(s) 198, 235
TfiI GAWTC 3 cut(s) 70, 187, 303
TseI GCWGC 1 cut(s) 325
TspMI CCCGGG 1 cut(s) 386
VneI GTGCAC 1 cut(s) 381
XapI RAATTY 2 cut(s) 198, 235
XmaI CCCGGG 1 cut(s) 386
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.