pycom09g03510

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0002864
Physical Location & Seq
Reverse (-)
2603905 .. 2604434
530 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 333 bp
ATGACCAAGCACTGCCCACAAATTGACTCTTCGACTCAAGTTCCTGACCTGAGTTGTAGACAATGCGGGAGGGAGGGTCACGCGAATACAATTTGCACGTATCAGTACTATGTCCCGAAGGGTGAACAAGTTGGGCGTGGCGCTACTCTAATTTGTAGATGCTGTAAAAAAGAGGGTTGCCATCCTGGTACGAATGATTGGGTTGGTATTGCTGTTCCGAATTATTGTGAGATTTGTGGGAAGCTTTATGCGCACGGGACTGAAGACTGCCCCCCCGGAAGCAAGGAATGGAGGTGGTTGGTGACCAAGCTGCCTTTGTTGGCGTATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.26

Weight (kDa)

7.49

Isoelectric Point (pI)

33.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 252
AccI GTMKAC 1 cut(s) 58
AccII CGCG 1 cut(s) 83
AciI CCGC 1 cut(s) 66
AcuI CTGAAG 1 cut(s) 282
AfaI GTAC 2 cut(s) 107, 190
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 2 cut(s) 244, 310
AluI AGCT 2 cut(s) 244, 310
ApeKI GCWGC 1 cut(s) 310
AspLEI GCGC 2 cut(s) 143, 253
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 2 cut(s) 134, 313
BbsI GAAGAC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 297
BccI CCATC 1 cut(s) 189
BciT130I CCWGG 1 cut(s) 186
BcnI CCSGG 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 144
BisI GCNGC 1 cut(s) 311
BlsI GCNGC 1 cut(s) 312
BmcAI AGTACT 1 cut(s) 107
Bme1390I CCNGG 2 cut(s) 186, 276
BmrFI CCNGG 2 cut(s) 186, 276
BmsI GCATC 1 cut(s) 149
BpiI GAAGAC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 21
BpuMI CCSGG 1 cut(s) 276
BsaAI YACGTR 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 274
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 274
BseGI GGATG 1 cut(s) 181
BseMII CTCAG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 297
Bsh1236I CGCG 1 cut(s) 83
BsiSI CCGG 1 cut(s) 276
BslFI GGGAC 2 cut(s) 98, 271
BsmFI GGGAC 2 cut(s) 98, 271
BspACI CCGC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 42
BspFNI CGCG 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 274
Bst2UI CCWGG 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 34
BstBAI YACGTR 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 50
BstEII GGTNACC 1 cut(s) 301
BstF5I GGATG 1 cut(s) 181
BstFNI CGCG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 2 cut(s) 143, 253
BstMWI GCNNNNNNNGC 1 cut(s) 250
BstNI CCWGG 1 cut(s) 186
BstPI GGTNACC 1 cut(s) 301
BstSCI CCNGG 2 cut(s) 184, 274
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 297
BstV2I GAAGAC 1 cut(s) 270
BtsCI GGATG 1 cut(s) 181
BtsI GCAGTG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 10
CfoI GCGC 2 cut(s) 143, 253
Csp6I GTAC 2 cut(s) 106, 189
CviJI RGCY 2 cut(s) 244, 310
CviKI_1 RGCY 2 cut(s) 244, 310
CviQI GTAC 2 cut(s) 106, 189
DdeI CTNAG 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 282
Eco91I GGTNACC 1 cut(s) 301
EcoO65I GGTNACC 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 184
FaiI YATR 3 cut(s) 111, 249, 327
FaqI GGGAC 2 cut(s) 98, 271
FauI CCCGC 1 cut(s) 59
FblI GTMKAC 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 311
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 311
FspAI RTGCGCAY 1 cut(s) 252
FspI TGCGCA 1 cut(s) 252
GlaI GCGC 2 cut(s) 142, 252
GluI GCNGC 1 cut(s) 311
HaeII RGCGCY 1 cut(s) 144
HapII CCGG 1 cut(s) 276
HhaI GCGC 2 cut(s) 143, 253
Hin6I GCGC 2 cut(s) 141, 251
HinP1I GCGC 2 cut(s) 141, 251
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 2 cut(s) 26, 34
HpaII CCGG 1 cut(s) 276
HphI GGTGA 2 cut(s) 134, 313
Hpy166II GTNNAC 2 cut(s) 59, 125
Hpy188I TCNGA 1 cut(s) 219
Hpy188III TCNNGA 2 cut(s) 44, 115
Hpy8I GTNNAC 2 cut(s) 59, 125
HpyAV CCTTC 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 98
HpyCH4V TGCA 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 1 cut(s) 250
HpyF3I CTNAG 1 cut(s) 50
HpySE526I ACGT 1 cut(s) 98
HspAI GCGC 2 cut(s) 141, 251
LpnPI CCDG 5 cut(s) 57, 62, 171, 198, 289
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 1 cut(s) 149
MaeII ACGT 1 cut(s) 98
MaeIII GTNAC 2 cut(s) 77, 301
MboII GAAGA 2 cut(s) 21, 275
MluCI AATT 4 cut(s) 21, 90, 150, 220
MlyI GAGTC 2 cut(s) 20, 28
MnlI CCTC 4 cut(s) 63, 67, 166, 285
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 2 cut(s) 186, 276
MvaI CCWGG 1 cut(s) 186
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 250
NciI CCSGG 1 cut(s) 276
NmuCI GTSAC 2 cut(s) 77, 301
NsbI TGCGCA 1 cut(s) 252
PkrI GCNGC 1 cut(s) 312
PleI GAGTC 2 cut(s) 20, 28
PpsI GAGTC 2 cut(s) 20, 28
Ppu21I YACGTR 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 184
PspEI GGTNACC 1 cut(s) 301
PspGI CCWGG 1 cut(s) 184
RsaI GTAC 2 cut(s) 107, 190
RsaNI GTAC 2 cut(s) 106, 189
SatI GCNGC 1 cut(s) 311
ScaI AGTACT 1 cut(s) 107
SchI GAGTC 2 cut(s) 20, 28
ScrFI CCNGG 2 cut(s) 186, 276
SetI ASST 5 cut(s) 51, 101, 246, 296, 312
SfaNI GCATC 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
Sse9I AATT 4 cut(s) 21, 90, 150, 220
SsiI CCGC 1 cut(s) 66
StyD4I CCNGG 2 cut(s) 184, 274
TaiI ACGT 1 cut(s) 101
TaqI TCGA 1 cut(s) 32
TasI AATT 4 cut(s) 21, 90, 150, 220
TatI WGTACW 1 cut(s) 105
TscAI CASTG 1 cut(s) 17
TseFI GTSAC 2 cut(s) 77, 301
TseI GCWGC 1 cut(s) 310
Tsp45I GTSAC 2 cut(s) 77, 301
TspRI CASTG 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 58
ZrmI AGTACT 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.