MATE efflux family protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 47 |
| Acc16I | TGCGCA | 1 cut(s) | 715 |
| Acc36I | ACCTGC | 1 cut(s) | 47 |
| AccI | GTMKAC | 1 cut(s) | 567 |
| AciI | CCGC | 3 cut(s) | 653, 1284, 1302 |
| AclI | AACGTT | 2 cut(s) | 150, 296 |
| AclWI | GGATC | 3 cut(s) | 160, 283, 574 |
| AcoI | YGGCCR | 3 cut(s) | 193, 696, 1146 |
| AcsI | RAATTY | 3 cut(s) | 235, 450, 479 |
| AcuI | CTGAAG | 3 cut(s) | 194, 521, 1030 |
| AcyI | GRCGYC | 1 cut(s) | 1131 |
| AfaI | GTAC | 2 cut(s) | 621, 704 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 49, 402, 1312 |
| AflII | CTTAAG | 1 cut(s) | 971 |
| AgsI | TTSAA | 5 cut(s) | 456, 672, 784, 1107, 1246 |
| AjnI | CCWGG | 1 cut(s) | 114 |
| AleI | CACNNNNGTG | 1 cut(s) | 908 |
| AluBI | AGCT | 6 cut(s) | 208, 214, 287, 650, 662, 976 |
| AluI | AGCT | 6 cut(s) | 208, 214, 287, 650, 662, 976 |
| Alw21I | GWGCWC | 2 cut(s) | 289, 652 |
| Alw26I | GTCTC | 1 cut(s) | 6 |
| AlwI | GGATC | 3 cut(s) | 160, 283, 574 |
| Ama87I | CYCGRG | 1 cut(s) | 490 |
| AoxI | GGCC | 7 cut(s) | 193, 243, 696, 828, 1035, 1146, 1377 |
| ApeKI | GCWGC | 3 cut(s) | 659, 803, 1165 |
| ApoI | RAATTY | 3 cut(s) | 235, 450, 479 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 759 |
| AspLEI | GCGC | 2 cut(s) | 320, 716 |
| AspS9I | GGNCC | 3 cut(s) | 243, 828, 1035 |
| AsuC2I | CCSGG | 2 cut(s) | 491, 492 |
| AsuHPI | GGTGA | 4 cut(s) | 71, 215, 244, 589 |
| AvaI | CYCGRG | 1 cut(s) | 490 |
| BalI | TGGCCA | 2 cut(s) | 698, 1148 |
| BanII | GRGCYC | 2 cut(s) | 289, 652 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 815, 847 |
| Bbv12I | GWGCWC | 2 cut(s) | 289, 652 |
| BbvI | GCAGC | 3 cut(s) | 671, 815, 1177 |
| BccI | CCATC | 1 cut(s) | 204 |
| BceAI | ACGGC | 1 cut(s) | 523 |
| BciT130I | CCWGG | 1 cut(s) | 116 |
| BciVI | GTATCC | 1 cut(s) | 403 |
| BclI | TGATCA | 1 cut(s) | 61 |
| BcnI | CCSGG | 2 cut(s) | 491, 492 |
| BcoDI | GTCTC | 1 cut(s) | 6 |
| BfaI | CTAG | 2 cut(s) | 290, 995 |
| BfmI | CTRYAG | 1 cut(s) | 801 |
| BfrI | CTTAAG | 1 cut(s) | 971 |
| BfuAI | ACCTGC | 1 cut(s) | 47 |
| BfuI | GTATCC | 1 cut(s) | 403 |
| BisI | GCNGC | 3 cut(s) | 660, 804, 1166 |
| BlsI | GCNGC | 3 cut(s) | 661, 805, 1167 |
| Bme1390I | CCNGG | 3 cut(s) | 116, 491, 492 |
| BmeT110I | CYCGRG | 1 cut(s) | 490 |
| BmgT120I | GGNCC | 3 cut(s) | 243, 828, 1035 |
| BmiI | GGNNCC | 1 cut(s) | 1042 |
| BmrFI | CCNGG | 3 cut(s) | 116, 491, 492 |
| BmrI | ACTGGG | 1 cut(s) | 578 |
| BmsI | GCATC | 4 cut(s) | 372, 675, 852, 1357 |
| BmuI | ACTGGG | 1 cut(s) | 578 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1257 |
| BpuMI | CCSGG | 2 cut(s) | 491, 492 |
| Bsa29I | ATCGAT | 1 cut(s) | 683 |
| BsaAI | YACGTR | 2 cut(s) | 702, 735 |
| BsaHI | GRCGYC | 1 cut(s) | 1131 |
| BsaJI | CCNNGG | 1 cut(s) | 490 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 33 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 49, 402, 1312 |
| Bse118I | RCCGGY | 4 cut(s) | 191, 218, 254, 1037 |
| Bse1I | ACTGG | 3 cut(s) | 567, 584, 1350 |
| Bse3DI | GCAATG | 3 cut(s) | 813, 963, 1091 |
| BseBI | CCWGG | 1 cut(s) | 116 |
| BseCI | ATCGAT | 1 cut(s) | 683 |
| BseDI | CCNNGG | 1 cut(s) | 490 |
| BseGI | GGATG | 1 cut(s) | 1160 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 49, 402, 1312 |
| BseMI | GCAATG | 3 cut(s) | 813, 963, 1091 |
| BseMII | CTCAG | 1 cut(s) | 930 |
| BseNI | ACTGG | 3 cut(s) | 567, 584, 1350 |
| BseRI | GAGGAG | 1 cut(s) | 116 |
| BseXI | GCAGC | 3 cut(s) | 671, 815, 1177 |
| BseYI | CCCAGC | 1 cut(s) | 337 |
| BsgI | GTGCAG | 2 cut(s) | 500, 886 |
| BshFI | GGCC | 7 cut(s) | 195, 245, 698, 830, 1037, 1148, 1379 |
| BshVI | ATCGAT | 1 cut(s) | 683 |
| BsiHKAI | GWGCWC | 2 cut(s) | 289, 652 |
| BsiHKCI | CYCGRG | 1 cut(s) | 490 |
| BsiSI | CCGG | 5 cut(s) | 192, 219, 255, 491, 1038 |
| BsiWI | CGTACG | 1 cut(s) | 702 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 49, 402, 1312 |
| BsmAI | GTCTC | 1 cut(s) | 6 |
| BsmI | GAATGC | 2 cut(s) | 339, 958 |
| BsnI | GGCC | 7 cut(s) | 195, 245, 698, 830, 1037, 1148, 1379 |
| BsoBI | CYCGRG | 1 cut(s) | 490 |
| Bsp1286I | GDGCHC | 2 cut(s) | 289, 652 |
| Bsp143I | GATC | 4 cut(s) | 61, 165, 275, 579 |
| BspACI | CCGC | 3 cut(s) | 653, 1284, 1302 |
| BspANI | GGCC | 7 cut(s) | 195, 245, 698, 830, 1037, 1148, 1379 |
| BspCNI | CTCAG | 1 cut(s) | 931 |
| BspDI | ATCGAT | 1 cut(s) | 683 |
| BspLI | GGNNCC | 1 cut(s) | 1042 |
| BspMAI | CTGCAG | 1 cut(s) | 805 |
| BspMI | ACCTGC | 1 cut(s) | 47 |
| BspPI | GGATC | 3 cut(s) | 160, 283, 574 |
| BspTI | CTTAAG | 1 cut(s) | 971 |
| BsrDI | GCAATG | 3 cut(s) | 813, 963, 1091 |
| BsrFI | RCCGGY | 4 cut(s) | 191, 218, 254, 1037 |
| BsrI | ACTGG | 3 cut(s) | 567, 584, 1350 |
| BssAI | RCCGGY | 4 cut(s) | 191, 218, 254, 1037 |
| BssECI | CCNNGG | 1 cut(s) | 490 |
| BssMI | GATC | 4 cut(s) | 61, 165, 275, 579 |
| BssNI | GRCGYC | 1 cut(s) | 1131 |
| Bst2UI | CCWGG | 1 cut(s) | 116 |
| Bst4CI | ACNGT | 1 cut(s) | 250 |
| Bst6I | CTCTTC | 1 cut(s) | 63 |
| BstACI | GRCGYC | 1 cut(s) | 1131 |
| BstAFI | CTTAAG | 1 cut(s) | 971 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 230 |
| BstBAI | YACGTR | 2 cut(s) | 702, 735 |
| BstC8I | GCNNGC | 6 cut(s) | 193, 216, 657, 931, 1039, 1098 |
| BstDEI | CTNAG | 3 cut(s) | 97, 939, 1257 |
| BstF5I | GGATG | 1 cut(s) | 1160 |
| BstHHI | GCGC | 2 cut(s) | 320, 716 |
| BstKTI | GATC | 4 cut(s) | 64, 168, 278, 582 |
| BstMAI | GTCTC | 1 cut(s) | 6 |
| BstMBI | GATC | 4 cut(s) | 61, 165, 275, 579 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 230, 656, 953, 1047, 1376 |
| BstNI | CCWGG | 1 cut(s) | 116 |
| BstSCI | CCNGG | 3 cut(s) | 114, 489, 490 |
| BstSFI | CTRYAG | 1 cut(s) | 801 |
| BstV1I | GCAGC | 3 cut(s) | 671, 815, 1177 |
| Bsu15I | ATCGAT | 1 cut(s) | 683 |
| BsuI | GTATCC | 1 cut(s) | 403 |
| BsuRI | GGCC | 7 cut(s) | 195, 245, 698, 830, 1037, 1148, 1379 |
| BsuTUI | ATCGAT | 1 cut(s) | 683 |
| BtsCI | GGATG | 1 cut(s) | 1160 |
| BtsI | GCAGTG | 1 cut(s) | 1063 |
| BtsIMutI | CAGTG | 3 cut(s) | 560, 591, 1063 |
| BveI | ACCTGC | 1 cut(s) | 47 |
| Cac8I | GCNNGC | 6 cut(s) | 193, 216, 657, 931, 1039, 1098 |
| CfoI | GCGC | 2 cut(s) | 320, 716 |
| Cfr10I | RCCGGY | 4 cut(s) | 191, 218, 254, 1037 |
| Cfr13I | GGNCC | 3 cut(s) | 243, 828, 1035 |
| Cfr9I | CCCGGG | 1 cut(s) | 490 |
| ClaI | ATCGAT | 1 cut(s) | 683 |
| CseI | GACGC | 3 cut(s) | 62, 550, 1120 |
| CsiI | ACCWGGT | 1 cut(s) | 114 |
| Csp6I | GTAC | 2 cut(s) | 620, 703 |
| CviQI | GTAC | 2 cut(s) | 620, 703 |
| DdeI | CTNAG | 3 cut(s) | 97, 939, 1257 |
| DpnI | GATC | 4 cut(s) | 63, 167, 277, 581 |
| DpnII | GATC | 4 cut(s) | 61, 165, 275, 579 |
| EaeI | YGGCCR | 3 cut(s) | 193, 696, 1146 |
| Eam1104I | CTCTTC | 1 cut(s) | 63 |
| EarI | CTCTTC | 1 cut(s) | 63 |
| Ecl136II | GAGCTC | 2 cut(s) | 287, 650 |
| Eco24I | GRGCYC | 2 cut(s) | 289, 652 |
| Eco32I | GATATC | 1 cut(s) | 681 |
| Eco53kI | GAGCTC | 2 cut(s) | 287, 650 |
| Eco57I | CTGAAG | 3 cut(s) | 194, 521, 1030 |
| Eco88I | CYCGRG | 1 cut(s) | 490 |
| EcoICRI | GAGCTC | 2 cut(s) | 287, 650 |
| EcoRII | CCWGG | 1 cut(s) | 114 |
| EcoRV | GATATC | 1 cut(s) | 681 |
| EcoT38I | GRGCYC | 2 cut(s) | 289, 652 |
| FbaI | TGATCA | 1 cut(s) | 61 |
| FblI | GTMKAC | 1 cut(s) | 567 |
| Fnu4HI | GCNGC | 3 cut(s) | 660, 804, 1166 |
| FokI | GGATG | 1 cut(s) | 1167 |
| FriOI | GRGCYC | 2 cut(s) | 289, 652 |
| Fsp4HI | GCNGC | 3 cut(s) | 660, 804, 1166 |
| FspBI | CTAG | 2 cut(s) | 290, 995 |
| FspI | TGCGCA | 1 cut(s) | 715 |
| GlaI | GCGC | 2 cut(s) | 319, 715 |
| GluI | GCNGC | 3 cut(s) | 660, 804, 1166 |
| GsaI | CCCAGC | 1 cut(s) | 341 |
| HaeIII | GGCC | 7 cut(s) | 195, 245, 698, 830, 1037, 1148, 1379 |
| HapII | CCGG | 5 cut(s) | 192, 219, 255, 491, 1038 |
| HgaI | GACGC | 3 cut(s) | 62, 550, 1120 |
| HhaI | GCGC | 2 cut(s) | 320, 716 |
| Hin1I | GRCGYC | 1 cut(s) | 1131 |
| Hin6I | GCGC | 2 cut(s) | 318, 714 |
| HinP1I | GCGC | 2 cut(s) | 318, 714 |
| HindIII | AAGCTT | 1 cut(s) | 974 |
| HinfI | GANTC | 7 cut(s) | 139, 312, 755, 838, 967, 1118, 1339 |
| HpaII | CCGG | 5 cut(s) | 192, 219, 255, 491, 1038 |
| HphI | GGTGA | 4 cut(s) | 71, 215, 244, 589 |
| Hpy166II | GTNNAC | 2 cut(s) | 568, 1186 |
| Hpy188I | TCNGA | 3 cut(s) | 144, 174, 540 |
| Hpy188III | TCNNGA | 5 cut(s) | 65, 290, 440, 835, 938 |
| Hpy8I | GTNNAC | 2 cut(s) | 568, 1186 |
| HpyAV | CCTTC | 3 cut(s) | 734, 841, 1054 |
| HpyCH4III | ACNGT | 1 cut(s) | 250 |
| HpyCH4IV | ACGT | 5 cut(s) | 150, 296, 701, 705, 734 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 230, 656, 953, 1047, 1376 |
| HpyF3I | CTNAG | 3 cut(s) | 97, 939, 1257 |
| HpySE526I | ACGT | 5 cut(s) | 150, 296, 701, 705, 734 |
| Hsp92I | GRCGYC | 1 cut(s) | 1131 |
| HspAI | GCGC | 2 cut(s) | 318, 714 |
| KroI | GCCGGC | 2 cut(s) | 191, 1037 |
| KroNI | GCCGGC | 2 cut(s) | 193, 1039 |
| Ksp22I | TGATCA | 1 cut(s) | 61 |
| Kzo9I | GATC | 4 cut(s) | 61, 165, 275, 579 |
| LmnI | GCTCC | 5 cut(s) | 284, 647, 655, 926, 1046 |
| Lsp1109I | GCAGC | 3 cut(s) | 671, 815, 1177 |
| LweI | GCATC | 4 cut(s) | 372, 675, 852, 1357 |
| MabI | ACCWGGT | 1 cut(s) | 114 |
| MaeI | CTAG | 2 cut(s) | 290, 995 |
| MaeII | ACGT | 5 cut(s) | 150, 296, 701, 705, 734 |
| MaeIII | GTNAC | 5 cut(s) | 250, 730, 964, 1022, 1318 |
| MalI | GATC | 4 cut(s) | 63, 167, 277, 581 |
| MboI | GATC | 4 cut(s) | 61, 165, 275, 579 |
| MboII | GAAGA | 3 cut(s) | 80, 527, 584 |
| MfeI | CAATTG | 1 cut(s) | 1218 |
| MhlI | GDGCHC | 2 cut(s) | 289, 652 |
| MlsI | TGGCCA | 2 cut(s) | 698, 1148 |
| MluNI | TGGCCA | 2 cut(s) | 698, 1148 |
| MlyI | GAGTC | 2 cut(s) | 961, 1333 |
| MmeI | TCCRAC | 4 cut(s) | 30, 253, 580, 801 |
| Mox20I | TGGCCA | 2 cut(s) | 698, 1148 |
| MroNI | GCCGGC | 2 cut(s) | 191, 1037 |
| MroXI | GAANNNNTTC | 1 cut(s) | 759 |
| MscI | TGGCCA | 2 cut(s) | 698, 1148 |
| MseI | TTAA | 4 cut(s) | 431, 972, 1239, 1277 |
| MslI | CAYNNNNRTG | 2 cut(s) | 201, 908 |
| Msp20I | TGGCCA | 2 cut(s) | 698, 1148 |
| MspA1I | CMGCKG | 1 cut(s) | 655 |
| MspCI | CTTAAG | 1 cut(s) | 971 |
| MspI | CCGG | 5 cut(s) | 192, 219, 255, 491, 1038 |
| MspR9I | CCNGG | 3 cut(s) | 116, 491, 492 |
| MunI | CAATTG | 1 cut(s) | 1218 |
| Mva1269I | GAATGC | 2 cut(s) | 339, 958 |
| MvaI | CCWGG | 1 cut(s) | 116 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 230, 656, 953, 1047, 1376 |
| NaeI | GCCGGC | 2 cut(s) | 193, 1039 |
| NciI | CCSGG | 2 cut(s) | 491, 492 |
| NdeII | GATC | 4 cut(s) | 61, 165, 275, 579 |
| NgoMIV | GCCGGC | 2 cut(s) | 191, 1037 |
| NlaIV | GGNNCC | 1 cut(s) | 1042 |
| NmuCI | GTSAC | 3 cut(s) | 250, 964, 1022 |
| NsbI | TGCGCA | 1 cut(s) | 715 |
| OliI | CACNNNNGTG | 1 cut(s) | 908 |
| PaqCI | CACCTGC | 1 cut(s) | 47 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 393 |
| PctI | GAATGC | 2 cut(s) | 339, 958 |
| PdiI | GCCGGC | 2 cut(s) | 193, 1039 |
| PdmI | GAANNNNTTC | 1 cut(s) | 759 |
| PfeI | GAWTC | 5 cut(s) | 139, 312, 755, 838, 1118 |
| Pfl23II | CGTACG | 1 cut(s) | 702 |
| PkrI | GCNGC | 3 cut(s) | 661, 805, 1167 |
| PleI | GAGTC | 2 cut(s) | 961, 1333 |
| PpsI | GAGTC | 2 cut(s) | 961, 1333 |
| Ppu21I | YACGTR | 2 cut(s) | 702, 735 |
| Psp124BI | GAGCTC | 2 cut(s) | 289, 652 |
| Psp1406I | AACGTT | 2 cut(s) | 150, 296 |
| Psp6I | CCWGG | 1 cut(s) | 114 |
| PspFI | CCCAGC | 1 cut(s) | 337 |
| PspGI | CCWGG | 1 cut(s) | 114 |
| PspLI | CGTACG | 1 cut(s) | 702 |
| PspN4I | GGNNCC | 1 cut(s) | 1042 |
| PspPI | GGNCC | 3 cut(s) | 243, 828, 1035 |
| PstI | CTGCAG | 1 cut(s) | 805 |
| RsaI | GTAC | 2 cut(s) | 621, 704 |
| RsaNI | GTAC | 2 cut(s) | 620, 703 |
| RseI | CAYNNNNRTG | 2 cut(s) | 201, 908 |
| SacI | GAGCTC | 2 cut(s) | 289, 652 |
| SaqAI | TTAA | 4 cut(s) | 431, 972, 1239, 1277 |
| SatI | GCNGC | 3 cut(s) | 660, 804, 1166 |
| Sau3AI | GATC | 4 cut(s) | 61, 165, 275, 579 |
| Sau96I | GGNCC | 3 cut(s) | 243, 828, 1035 |
| SchI | GAGTC | 2 cut(s) | 961, 1333 |
| ScrFI | CCNGG | 3 cut(s) | 116, 491, 492 |
| SduI | GDGCHC | 2 cut(s) | 289, 652 |
| SexAI | ACCWGGT | 1 cut(s) | 114 |
| SfaNI | GCATC | 4 cut(s) | 372, 675, 852, 1357 |
| SfcI | CTRYAG | 1 cut(s) | 801 |
| SmaI | CCCGGG | 1 cut(s) | 492 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 201, 908 |
| SmlI | CTYRAG | 1 cut(s) | 971 |
| SmoI | CTYRAG | 1 cut(s) | 971 |
| SsiI | CCGC | 3 cut(s) | 653, 1284, 1302 |
| SspMI | CTAG | 2 cut(s) | 290, 995 |
| SstI | GAGCTC | 2 cut(s) | 289, 652 |
| StyD4I | CCNGG | 3 cut(s) | 114, 489, 490 |
| TaaI | ACNGT | 1 cut(s) | 250 |
| TaiI | ACGT | 5 cut(s) | 153, 299, 704, 708, 737 |
| TaqI | TCGA | 4 cut(s) | 665, 683, 834, 1342 |
| TfiI | GAWTC | 5 cut(s) | 139, 312, 755, 838, 1118 |
| Tru1I | TTAA | 4 cut(s) | 431, 972, 1239, 1277 |
| Tru9I | TTAA | 4 cut(s) | 431, 972, 1239, 1277 |
| TscAI | CASTG | 3 cut(s) | 567, 591, 1063 |
| TseFI | GTSAC | 3 cut(s) | 250, 964, 1022 |
| TseI | GCWGC | 3 cut(s) | 659, 803, 1165 |
| Tsp45I | GTSAC | 3 cut(s) | 250, 964, 1022 |
| TspGWI | ACGGA | 2 cut(s) | 24, 385 |
| TspMI | CCCGGG | 1 cut(s) | 490 |
| TspRI | CASTG | 3 cut(s) | 567, 591, 1063 |
| Vha464I | CTTAAG | 1 cut(s) | 971 |
| XapI | RAATTY | 3 cut(s) | 235, 450, 479 |
| XbaI | TCTAGA | 1 cut(s) | 289 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 955 |
| XmaI | CCCGGG | 1 cut(s) | 490 |
| XmiI | GTMKAC | 1 cut(s) | 567 |
| XmnI | GAANNNNTTC | 1 cut(s) | 759 |
| XspI | CTAG | 2 cut(s) | 290, 995 |