pycom12g24090

Belongs to the eukaryotic ribosomal protein eL38 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0001881
Physical Location & Seq
Forward (+)
24467153 .. 24468632
1480 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 333 bp
ATGCGAAATGGGCTAAAAATGGGTTTCATCTCGTATATAGCCTCCTTGCCTCAACATCCAACTCCGACTTTCAGAGACAACTCGCAGCCTCCAGCAAGCAGCAAGCAACAAGCAAAAAGCAAAATGCCGAAGCAGATCCATGAGATTAAGGATTTCCTTCTAACCGCAAGAAGGAAGGATGCCCGCAATGTCAAAATCAAGAGGACCAAGGATGCTGTCAAGTTCAAGGTTCGGTGCTCCAAGTACCTTTACACGCTTTGTGTGTTTGATTCCGAGAAGGCCAACAAGTTGAAGCAATCTCTTCCACCAGGTTTGAACGTTCAGGATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L38e

Protein Analysis

111

Amino Acids

12.61

Weight (kDa)

10.23

Isoelectric Point (pI)

58.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L38e PF01781 43 - 109 2.9e-34 Ribosomal L38e protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 165, 184
AclI AACGTT 1 cut(s) 318
AclWI GGATC 1 cut(s) 130
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 3 cut(s) 226, 292, 316
AjnI CCWGG 1 cut(s) 307
Alw21I GWGCWC 1 cut(s) 239
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 1 cut(s) 130
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 2 cut(s) 85, 99
AspS9I GGNCC 1 cut(s) 204
AvaII GGWCC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 239
BbvI GCAGC 2 cut(s) 97, 111
BciT130I CCWGG 1 cut(s) 309
BcoDI GTCTC 1 cut(s) 69
BisI GCNGC 2 cut(s) 86, 100
BlsI GCNGC 2 cut(s) 87, 101
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 2 cut(s) 169, 202
BpmI CTGGAG 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 193
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 3 cut(s) 55, 184, 217
BseLI CCNNNNNNNGG 1 cut(s) 171
BseMI GCAATG 1 cut(s) 193
BseXI GCAGC 2 cut(s) 97, 111
BshFI GGCC 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 171
BsmAI GTCTC 1 cut(s) 69
BsnI GGCC 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 239
Bsp143I GATC 2 cut(s) 135, 325
BspACI CCGC 2 cut(s) 165, 184
BspANI GGCC 1 cut(s) 281
BspPI GGATC 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 2 cut(s) 135, 325
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 309
Bst6I CTCTTC 1 cut(s) 306
BstC8I GCNNGC 3 cut(s) 97, 104, 184
BstF5I GGATG 3 cut(s) 55, 184, 217
BstKTI GATC 2 cut(s) 138, 328
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 2 cut(s) 135, 325
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 307
BstV1I GCAGC 2 cut(s) 97, 111
BstX2I RGATCY 2 cut(s) 135, 325
BstYI RGATCY 2 cut(s) 135, 325
BsuRI GGCC 1 cut(s) 281
BtsCI GGATG 3 cut(s) 55, 184, 217
Cac8I GCNNGC 3 cut(s) 97, 104, 184
Cfr13I GGNCC 1 cut(s) 204
CsiI ACCWGGT 1 cut(s) 307
Csp6I GTAC 1 cut(s) 244
CspCI CAANNNNNGTGG 2 cut(s) 294, 329
CviAII CATG 1 cut(s) 140
CviJI RGCY 4 cut(s) 13, 41, 88, 281
CviKI_1 RGCY 4 cut(s) 13, 41, 88, 281
CviQI GTAC 1 cut(s) 244
DpnI GATC 2 cut(s) 137, 327
DpnII GATC 2 cut(s) 135, 325
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 1 cut(s) 143
FaiI YATR 3 cut(s) 36, 38, 141
FatI CATG 1 cut(s) 139
FauI CCCGC 1 cut(s) 191
Fnu4HI GCNGC 2 cut(s) 86, 100
FokI GGATG 3 cut(s) 42, 191, 224
Fsp4HI GCNGC 2 cut(s) 86, 100
GluI GCNGC 2 cut(s) 86, 100
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 1 cut(s) 281
Hin1II CATG 1 cut(s) 143
HinfI GANTC 1 cut(s) 269
Hpy188I TCNGA 3 cut(s) 66, 74, 274
Hpy188III TCNNGA 2 cut(s) 199, 323
HpyAV CCTTC 4 cut(s) 165, 167, 169, 271
HpyCH4IV ACGT 1 cut(s) 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 1 cut(s) 143
Kzo9I GATC 2 cut(s) 135, 325
LmnI GCTCC 1 cut(s) 242
LpnPI CCDG 4 cut(s) 105, 294, 308, 321
Lsp1109I GCAGC 2 cut(s) 97, 111
LweI GCATC 2 cut(s) 169, 202
MabI ACCWGGT 1 cut(s) 307
MaeII ACGT 1 cut(s) 318
MalI GATC 2 cut(s) 137, 327
MboI GATC 2 cut(s) 135, 325
MboII GAAGA 1 cut(s) 293
MflI RGATCY 2 cut(s) 135, 325
MhlI GDGCHC 1 cut(s) 239
MmeI TCCRAC 2 cut(s) 83, 89
MnlI CCTC 4 cut(s) 52, 60, 99, 195
MseI TTAA 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 2 cut(s) 135, 325
NlaIII CATG 1 cut(s) 143
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 2 cut(s) 87, 101
Psp1406I AACGTT 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspPI GGNCC 1 cut(s) 204
PsuI RGATCY 2 cut(s) 135, 325
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 2 cut(s) 86, 100
Sau3AI GATC 2 cut(s) 135, 325
Sau96I GGNCC 1 cut(s) 204
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 1 cut(s) 239
SetI ASST 4 cut(s) 231, 249, 313, 321
SexAI ACCWGGT 1 cut(s) 307
SfaNI GCATC 2 cut(s) 169, 202
SinI GGWCC 1 cut(s) 204
SsiI CCGC 2 cut(s) 165, 184
StyD4I CCNGG 1 cut(s) 307
StyI CCWWGG 1 cut(s) 207
TaiI ACGT 1 cut(s) 321
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TseI GCWGC 2 cut(s) 85, 99
TspDTI ATGAA 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.