pycom13g15010

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0004523
Physical Location & Seq
Forward (+)
10908494 .. 10909699
1206 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 837 bp
ATGCGTGAAGTTGAAAGTGATGGAACCCTCCAAACCTTTGAACTTAATGAGGAGGGTCACAGAACAGTTTATGTTGTCAAATTCAACTCTTCAACTTTCAACATCTCATGTAGTTGCAAGAGGTTTGAATCCATGGGTTTGTTATGTCGTCATGCTCTACCGGTAATGAATGTAAAAGAAGTTTCTCAAATACCAAATCAATACATATTGAAATGGTGGACGAAAAACGCAAAGAAAGAATGGAATGAAAATGAGCATGGAGAATCTTTACATGTAAGTGACAATTCGTCAATGACGTTGCATCGGAATACTTTGATGCGGATTGCTTATGGTATATTGAGTATGGGAGCTGAGACAAAAAGTTGTCATAGAATTGCAGTGAAAAAATTGAAAGAAATGGCACAATTGCTTGACAAAGAAATGAAGTCAAATGGGGAAGAAATTGCTAATAAAGAAAGCAATGACGTTTTGAATGATGCTACTGTTTGTGATATTGATGGAGTCAATAACTCATCTGATGAGGCACCGGTGTTGAATCTTCCGAGTGTGAGGCCAAAGGGAATAAGTACTGGCTCATCTAAGAAAACCAAACCACCAAGCAGTGGTGGTCCTTCACATACCGCCAATGCCAATGCTCGTTTCCCTTCAACTAATCAGTTCTATCCAACTATGACAATGCCAACTGCCAATTCCCATGTTTGTTTCCCTTCACCTAATCAGCTCTATCCAACACTGAGTTTGCTAACCACCAATGCACATGCTCGTTTCCCTTCATCTAATAAGTTCTATCCAACCACGAGATTGTCAACCACCAATGTCAAGACTGCCTTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

279

Amino Acids

30.94

Weight (kDa)

8.82

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 26 - 56 1.7e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 523
AccB7I CCANNNNNTGG 1 cut(s) 602
AciI CCGC 2 cut(s) 319, 621
AcsI RAATTY 1 cut(s) 80
AfaI GTAC 1 cut(s) 568
AfiI CCNNNNNNNGG 1 cut(s) 602
AflIII ACRYGT 1 cut(s) 271
AgeI ACCGGT 2 cut(s) 160, 526
AhdI GACNNNNNGTC 1 cut(s) 286
AjuI GAANNNNNNNTTGG 4 cut(s) 623, 655, 673, 705
AluBI AGCT 2 cut(s) 350, 721
AluI AGCT 2 cut(s) 350, 721
Alw26I GTCTC 1 cut(s) 347
AoxI GGCC 1 cut(s) 551
ApoI RAATTY 1 cut(s) 80
AsiGI ACCGGT 2 cut(s) 160, 526
AspS9I GGNCC 1 cut(s) 608
AsuHPI GGTGA 1 cut(s) 702
AvaII GGWCC 1 cut(s) 608
BanI GGYRCC 1 cut(s) 523
BauI CACGAG 1 cut(s) 796
BccI CCATC 2 cut(s) 14, 491
BcoDI GTCTC 1 cut(s) 347
BmcAI AGTACT 1 cut(s) 568
Bme18I GGWCC 1 cut(s) 608
BmeRI GACNNNNNGTC 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 608
BmiI GGNNCC 2 cut(s) 25, 525
BmsI GCATC 3 cut(s) 306, 310, 466
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 2 cut(s) 160, 526
Bsc4I CCNNNNNNNGG 1 cut(s) 602
Bse118I RCCGGY 2 cut(s) 160, 526
Bse1I ACTGG 1 cut(s) 574
Bse3DI GCAATG 1 cut(s) 466
BseDI CCNNGG 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 602
BseMI GCAATG 1 cut(s) 466
BseMII CTCAG 2 cut(s) 342, 725
BseNI ACTGG 1 cut(s) 574
BseRI GAGGAG 1 cut(s) 65
BshFI GGCC 1 cut(s) 553
BshNI GGYRCC 1 cut(s) 523
BshTI ACCGGT 2 cut(s) 160, 526
BsiSI CCGG 2 cut(s) 161, 527
BslI CCNNNNNNNGG 1 cut(s) 602
BsmAI GTCTC 1 cut(s) 347
BsnI GGCC 1 cut(s) 553
Bsp19I CCATGG 1 cut(s) 132
BspACI CCGC 2 cut(s) 319, 621
BspANI GGCC 1 cut(s) 553
BspCNI CTCAG 2 cut(s) 343, 726
BspLI GGNNCC 2 cut(s) 25, 525
BspT107I GGYRCC 1 cut(s) 523
BsrDI GCAATG 1 cut(s) 466
BsrFI RCCGGY 2 cut(s) 160, 526
BsrI ACTGG 1 cut(s) 574
BssAI RCCGGY 2 cut(s) 160, 526
BssECI CCNNGG 1 cut(s) 132
BssSI CACGAG 1 cut(s) 796
BssT1I CCWWGG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 796
Bst4CI ACNGT 2 cut(s) 67, 484
Bst6I CTCTTC 1 cut(s) 94
BstDEI CTNAG 3 cut(s) 351, 579, 734
BstDSI CCRYGG 1 cut(s) 132
BstMAI GTCTC 1 cut(s) 347
BstNSI RCATGY 2 cut(s) 275, 761
BsuRI GGCC 1 cut(s) 553
BtgI CCRYGG 1 cut(s) 132
BtsI GCAGTG 2 cut(s) 384, 607
BtsIMutI CAGTG 3 cut(s) 384, 607, 731
Cfr10I RCCGGY 2 cut(s) 160, 526
Cfr13I GGNCC 1 cut(s) 608
Csp6I GTAC 1 cut(s) 567
CspAI ACCGGT 2 cut(s) 160, 526
CviAII CATG 7 cut(s) 108, 133, 152, 257, 272, 695, 758
CviJI RGCY 4 cut(s) 350, 553, 573, 721
CviKI_1 RGCY 4 cut(s) 350, 553, 573, 721
CviQI GTAC 1 cut(s) 567
DdeI CTNAG 3 cut(s) 351, 579, 734
DriI GACNNNNNGTC 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 94
Eam1105I GACNNNNNGTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 608
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 7 cut(s) 111, 136, 155, 260, 275, 698, 761
FalI AAGNNNNNCTT 1 cut(s) 812
FatI CATG 7 cut(s) 107, 132, 151, 256, 271, 694, 757
HaeIII GGCC 1 cut(s) 553
HapII CCGG 2 cut(s) 161, 527
Hin1II CATG 7 cut(s) 111, 136, 155, 260, 275, 698, 761
HincII GTYRAC 1 cut(s) 807
HindII GTYRAC 1 cut(s) 807
HinfI GANTC 4 cut(s) 128, 263, 501, 535
HpaII CCGG 2 cut(s) 161, 527
HphI GGTGA 1 cut(s) 702
Hpy166II GTNNAC 2 cut(s) 219, 807
Hpy188I TCNGA 3 cut(s) 306, 517, 543
Hpy188III TCNNGA 1 cut(s) 820
Hpy8I GTNNAC 2 cut(s) 219, 807
HpyAV CCTTC 4 cut(s) 621, 654, 717, 780
HpyCH4III ACNGT 2 cut(s) 67, 484
HpyCH4IV ACGT 2 cut(s) 296, 465
HpyCH4V TGCA 4 cut(s) 117, 301, 377, 755
HpyF3I CTNAG 3 cut(s) 351, 579, 734
HpySE526I ACGT 2 cut(s) 296, 465
Hsp92II CATG 7 cut(s) 111, 136, 155, 260, 275, 698, 761
LmnI GCTCC 1 cut(s) 347
LpnPI CCDG 3 cut(s) 174, 540, 555
LweI GCATC 3 cut(s) 306, 310, 466
MaeII ACGT 2 cut(s) 296, 465
MaeIII GTNAC 2 cut(s) 56, 278
MboII GAAGA 3 cut(s) 81, 449, 530
MfeI CAATTG 1 cut(s) 404
MluCI AATT 7 cut(s) 80, 283, 372, 386, 404, 441, 688
MlyI GAGTC 1 cut(s) 510
MmeI TCCRAC 3 cut(s) 689, 752, 815
MnlI CCTC 6 cut(s) 38, 43, 46, 114, 514, 543
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 1 cut(s) 276
MspI CCGG 2 cut(s) 161, 527
MunI CAATTG 1 cut(s) 404
NcoI CCATGG 1 cut(s) 132
NlaIII CATG 7 cut(s) 111, 136, 155, 260, 275, 698, 761
NlaIV GGNNCC 2 cut(s) 25, 525
NmuCI GTSAC 2 cut(s) 56, 278
NspI RCATGY 2 cut(s) 275, 761
PciI ACATGT 1 cut(s) 271
PcsI WCGNNNNNNNCGW 1 cut(s) 293
PfeI GAWTC 3 cut(s) 128, 263, 535
PflMI CCANNNNNTGG 1 cut(s) 602
PinAI ACCGGT 2 cut(s) 160, 526
PleI GAGTC 1 cut(s) 509
PpsI GAGTC 1 cut(s) 509
PscI ACATGT 1 cut(s) 271
PspN4I GGNNCC 2 cut(s) 25, 525
PspPI GGNCC 1 cut(s) 608
RsaI GTAC 1 cut(s) 568
RsaNI GTAC 1 cut(s) 567
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 1 cut(s) 45
Sau96I GGNCC 1 cut(s) 608
ScaI AGTACT 1 cut(s) 568
SchI GAGTC 1 cut(s) 510
SetI ASST 7 cut(s) 38, 125, 299, 352, 468, 715, 723
SfaNI GCATC 3 cut(s) 306, 310, 466
SgrAI CRCCGGYG 1 cut(s) 526
SinI GGWCC 1 cut(s) 608
SmiMI CAYNNNNRTG 1 cut(s) 276
Sse9I AATT 7 cut(s) 80, 283, 372, 386, 404, 441, 688
SsiI CCGC 2 cut(s) 319, 621
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 2 cut(s) 67, 484
TaiI ACGT 2 cut(s) 299, 468
TasI AATT 7 cut(s) 80, 283, 372, 386, 404, 441, 688
TatI WGTACW 1 cut(s) 566
TfiI GAWTC 3 cut(s) 128, 263, 535
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 3 cut(s) 384, 607, 738
TseFI GTSAC 2 cut(s) 56, 278
Tsp45I GTSAC 2 cut(s) 56, 278
TspDTI ATGAA 4 cut(s) 182, 261, 437, 762
TspRI CASTG 3 cut(s) 384, 607, 738
Van91I CCANNNNNTGG 1 cut(s) 602
VpaK11BI GGWCC 1 cut(s) 608
XapI RAATTY 1 cut(s) 80
XceI RCATGY 2 cut(s) 275, 761
ZrmI AGTACT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.