Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002068

Physical Location & Seq

Genomic Coordinates Reverse (-)

19987490 .. 19989344

Gene Structure 1855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g22470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCTGAATTTCCATCAGCCAAGCCTCCGCTTGGTGTCTTCTTCGCGGCAGTCGCTCCAAGATTGCAGCCTAGATACTATTCAATCTCGTCATCCCCAAGGATGGCGTCTTCTAGAATTCACGTTACTTGTGCTTTAGTTCATGAGAAAACACGAGCAGGAAGGATCCACAAAGGAGTGTGTTCAACCTGGATGAAGAATTCCATTCCTTTGGAGAAGAGCGATGACTGTAGCTGGGCACCCATTTTTGTTCGACAATCCAACTTCAAACTTCCTGCCGATACTAAAGTACCTATTCTTATGATTGGTCCTGGAACCGGATTTGCTCCATTCAGGGGTTTCCTGCAGGATTACATTTACGAAGATGAGCTGAACAACTTTTTAGCAACCGGTGCACTTTCTGAGCTGGTGGTTGCATTCTCACGTCAGGGACCCACCAAGGAATATGTGCAGCATAGAATGATGCAGAAGGCGTCAGACGTCTGGAACATGATATCTCAGGGAGGTTATATTTACGTTTGTGGTGATGCTAAGGGCATGGCCAGGGATGTCCACCGGACTCTTCACACAATCGTGCAGGAGCAGGGATGCATGGACAGCTCCAAAGCCGAGAGCCTGGTGAAAAATCTGCAAATGAACGGAAGATATCTGCGTGATGTGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009698 GO:0009987 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

222

Amino Acids

24.8

Weight (kDa)

9.22

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_1	PF00667	1 - 64	7.3e-21	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30210 AT4G30210 AT4G30210
fragaria_vesca	FvH4_4g08180
malus_domestica	MD13G1253300.v1.1 MD16G1257600.v1.1
prunus_persica	Prupe.1G085400_v2.0.a1
pyrus_communis	pycom12480g00040 pycom13g22470
rosa_chinensis	RchiOBHm_Chr1g0334331 RchiOBHm_Chr4g0402381 RchiOBHm_Chr4g0402391 RchiOBHm_Chr4g0419591 RchiOBHm_Chr7g0226121
rosa_laevigata	RLG00000009089 RLG00000009093 RLG00000009097 RLG00000009098
rosa_multiflora	Rmu_co8074388.1_g000001 Rmu_sc0002660.1_g000001 Rmu_sc0023635.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022590 Rroxscaffold_5G00347040 Rroxscaffold_5G00347050
rosa_rugosa	Rorug03G0293000 Rorug04G0034500 Rorug04G0034500 Rorug04G0034600 Rorug04G0034700 Rorug04G0034800 Rorug04G0034900 Rorug04G0035000 Rorug05G0246500
rosa_samantha	Rh4AG112500 Rh4AG112600 Rh4BG105000 Rh4BG105100 Rh4CG004400 Rh4CG119300 Rh4CG119400 Rh4DG104000 Rh4DG104100 Rh5AG337100
rosa_wichuraiana	Rw4G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	483
AccB1I	GGYRCC	1 cut(s)	238
AccII	CGCG	1 cut(s)	47
AciI	CCGC	2 cut(s)	29, 47
AclWI	GGATC	2 cut(s)	160, 173
AcoI	YGGCCR	1 cut(s)	540
AcsI	RAATTY	3 cut(s)	8, 117, 199
AcyI	GRCGYC	3 cut(s)	107, 473, 480
AfaI	GTAC	1 cut(s)	291
AfiI	CCNNNNNNNGG	4 cut(s)	32, 103, 317, 335
AgeI	ACCGGT	1 cut(s)	389
AgsI	TTSAA	3 cut(s)	84, 186, 268
AjiI	CACGTC	1 cut(s)	425
AjnI	CCWGG	4 cut(s)	188, 310, 542, 615
AleI	CACNNNNGTG	1 cut(s)	572
AluBI	AGCT	4 cut(s)	234, 370, 406, 600
AluI	AGCT	4 cut(s)	234, 370, 406, 600
Alw21I	GWGCWC	1 cut(s)	397
Alw44I	GTGCAC	1 cut(s)	393
AlwI	GGATC	2 cut(s)	160, 173
AoxI	GGCC	1 cut(s)	540
ApaLI	GTGCAC	1 cut(s)	393
ApeKI	GCWGC	2 cut(s)	67, 451
ApoI	RAATTY	3 cut(s)	8, 117, 199
AsiGI	ACCGGT	1 cut(s)	389
AspS9I	GGNCC	2 cut(s)	308, 431
AsuHPI	GGTGA	2 cut(s)	536, 631
AvaII	GGWCC	2 cut(s)	308, 431
BaeGI	GKGCMC	2 cut(s)	241, 397
BaeI	ACNNNNGTAYC	4 cut(s)	273, 273, 306, 306
BalI	TGGCCA	1 cut(s)	542
BamHI	GGATCC	1 cut(s)	165
BanI	GGYRCC	1 cut(s)	238
BauI	CACGAG	1 cut(s)	153
BbsI	GAAGAC	2 cut(s)	31, 102
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	2 cut(s)	79, 463
BccI	CCATC	2 cut(s)	22, 97
BciT130I	CCWGG	4 cut(s)	190, 312, 544, 617
BfaI	CTAG	2 cut(s)	72, 114
BfmI	CTRYAG	2 cut(s)	229, 344
BisI	GCNGC	3 cut(s)	48, 68, 452
BlsI	GCNGC	3 cut(s)	49, 69, 453
Bme1390I	CCNGG	4 cut(s)	190, 312, 544, 617
Bme18I	GGWCC	2 cut(s)	308, 431
BmgBI	CACGTC	1 cut(s)	425
BmgT120I	GGNCC	2 cut(s)	308, 431
BmiI	GGNNCC	5 cut(s)	167, 240, 316, 432, 433
BmrFI	CCNGG	4 cut(s)	190, 312, 544, 617
BmsI	GCATC	3 cut(s)	453, 517, 578
BpiI	GAAGAC	2 cut(s)	31, 102
Bpu10I	CCTNAGC	1 cut(s)	531
BsaHI	GRCGYC	3 cut(s)	107, 473, 480
BsaJI	CCNNGG	3 cut(s)	98, 438, 543
BsaWI	WCCGGW	3 cut(s)	317, 389, 555
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 103, 317, 335
Bse118I	RCCGGY	1 cut(s)	389
BseBI	CCWGG	4 cut(s)	190, 312, 544, 617
BseDI	CCNNGG	3 cut(s)	98, 438, 543
BseGI	GGATG	5 cut(s)	92, 108, 198, 553, 593
BseLI	CCNNNNNNNGG	4 cut(s)	32, 103, 317, 335
BseMII	CTCAG	2 cut(s)	393, 512
BseSI	GKGCMC	2 cut(s)	241, 397
BseXI	GCAGC	2 cut(s)	79, 463
BseYI	CCCAGC	1 cut(s)	234
BsgI	GTGCAG	2 cut(s)	470, 596
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	542
BshNI	GGYRCC	1 cut(s)	238
BshTI	ACCGGT	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	3 cut(s)	318, 390, 556
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	4 cut(s)	32, 103, 317, 335
BsmFI	GGGAC	1 cut(s)	444
BsmI	GAATGC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	542
Bsp1286I	GDGCHC	2 cut(s)	241, 397
Bsp143I	GATC	1 cut(s)	165
BspACI	CCGC	2 cut(s)	29, 47
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	2 cut(s)	394, 511
BspFNI	CGCG	1 cut(s)	47
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	5 cut(s)	167, 240, 316, 432, 433
BspMAI	CTGCAG	1 cut(s)	348
BspPI	GGATC	2 cut(s)	160, 173
BspQI	GCTCTTC	1 cut(s)	212
BspT107I	GGYRCC	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	389
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	3 cut(s)	98, 438, 543
BssMI	GATC	1 cut(s)	165
BssNI	GRCGYC	3 cut(s)	107, 473, 480
BssSI	CACGAG	1 cut(s)	153
BssT1I	CCWWGG	2 cut(s)	98, 438
Bst2BI	CACGAG	1 cut(s)	153
Bst2UI	CCWGG	4 cut(s)	190, 312, 544, 617
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	2 cut(s)	212, 567
BstACI	GRCGYC	3 cut(s)	107, 473, 480
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstDEI	CTNAG	3 cut(s)	402, 498, 531
BstF5I	GGATG	5 cut(s)	92, 108, 198, 553, 593
BstFNI	CGCG	1 cut(s)	47
BstKTI	GATC	1 cut(s)	168
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 392, 597
BstNI	CCWGG	4 cut(s)	190, 312, 544, 617
BstSCI	CCNGG	4 cut(s)	188, 310, 542, 615
BstSFI	CTRYAG	2 cut(s)	229, 344
BstSLI	GKGCMC	2 cut(s)	241, 397
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	79, 463
BstV2I	GAAGAC	2 cut(s)	31, 102
BstX2I	RGATCY	1 cut(s)	165
BstXI	CCANNNNNNTGG	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	542
BtgZI	GCGATG	1 cut(s)	237
BtrI	CACGTC	1 cut(s)	425
BtsCI	GGATG	5 cut(s)	92, 108, 198, 553, 593
CciI	TCATGA	1 cut(s)	142
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	2 cut(s)	308, 431
CseI	GACGC	2 cut(s)	96, 462
Csp6I	GTAC	1 cut(s)	290
CspAI	ACCGGT	1 cut(s)	389
CviAII	CATG	4 cut(s)	143, 490, 538, 592
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	3 cut(s)	402, 498, 531
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
EaeI	YGGCCR	1 cut(s)	540
Eam1104I	CTCTTC	2 cut(s)	212, 567
EarI	CTCTTC	2 cut(s)	212, 567
Eco130I	CCWWGG	2 cut(s)	98, 438
Eco32I	GATATC	2 cut(s)	495, 647
Eco47I	GGWCC	2 cut(s)	308, 431
EcoO109I	RGGNCCY	1 cut(s)	431
EcoRI	GAATTC	2 cut(s)	117, 199
EcoRII	CCWGG	4 cut(s)	188, 310, 542, 615
EcoRV	GATATC	2 cut(s)	495, 647
EcoT14I	CCWWGG	2 cut(s)	98, 438
EcoT22I	ATGCAT	1 cut(s)	593
ErhI	CCWWGG	2 cut(s)	98, 438
FaeI	CATG	4 cut(s)	146, 493, 541, 595
FaiI	YATR	8 cut(s)	144, 302, 447, 456, 491, 510, 539, 593
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	4 cut(s)	142, 489, 537, 591
Fnu4HI	GCNGC	3 cut(s)	48, 68, 452
FokI	GGATG	5 cut(s)	79, 115, 205, 560, 600
Fsp4HI	GCNGC	3 cut(s)	48, 68, 452
FspBI	CTAG	2 cut(s)	72, 114
GluI	GCNGC	3 cut(s)	48, 68, 452
GsaI	CCCAGC	1 cut(s)	238
HaeIII	GGCC	1 cut(s)	542
HapII	CCGG	3 cut(s)	318, 390, 556
HgaI	GACGC	2 cut(s)	96, 462
Hin1I	GRCGYC	3 cut(s)	107, 473, 480
Hin1II	CATG	4 cut(s)	146, 493, 541, 595
HinfI	GANTC	1 cut(s)	559
HpaII	CCGG	3 cut(s)	318, 390, 556
HphI	GGTGA	2 cut(s)	536, 631
Hpy166II	GTNNAC	2 cut(s)	395, 553
Hpy188I	TCNGA	2 cut(s)	403, 478
Hpy188III	TCNNGA	3 cut(s)	114, 143, 484
Hpy8I	GTNNAC	2 cut(s)	395, 553
HpyAV	CCTTC	2 cut(s)	156, 463
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	4 cut(s)	123, 424, 480, 516
HpyCH4V	TGCA	9 cut(s)	67, 346, 395, 416, 451, 466, 577, 591, 631
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 392, 597
HpyF3I	CTNAG	3 cut(s)	402, 498, 531
HpySE526I	ACGT	4 cut(s)	123, 424, 480, 516
Hsp92I	GRCGYC	3 cut(s)	107, 473, 480
Hsp92II	CATG	4 cut(s)	146, 493, 541, 595
KflI	GGGWCCC	1 cut(s)	431
Kzo9I	GATC	1 cut(s)	165
LguI	GCTCTTC	1 cut(s)	212
LmnI	GCTCC	4 cut(s)	61, 331, 580, 605
Lsp1109I	GCAGC	2 cut(s)	79, 463
LweI	GCATC	3 cut(s)	453, 517, 578
MaeI	CTAG	2 cut(s)	72, 114
MaeII	ACGT	4 cut(s)	123, 424, 480, 516
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	8 cut(s)	31, 34, 102, 208, 229, 374, 554, 654
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	2 cut(s)	241, 397
MlsI	TGGCCA	1 cut(s)	542
MluCI	AATT	3 cut(s)	8, 117, 199
MluNI	TGGCCA	1 cut(s)	542
MlyI	GAGTC	1 cut(s)	553
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	2 cut(s)	36, 497
Mox20I	TGGCCA	1 cut(s)	542
Mph1103I	ATGCAT	1 cut(s)	593
MscI	TGGCCA	1 cut(s)	542
MslI	CAYNNNNRTG	1 cut(s)	572
Msp20I	TGGCCA	1 cut(s)	542
MspI	CCGG	3 cut(s)	318, 390, 556
MspR9I	CCNGG	4 cut(s)	190, 312, 544, 617
Mva1269I	GAATGC	1 cut(s)	416
MvaI	CCWGG	4 cut(s)	190, 312, 544, 617
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	3 cut(s)	53, 392, 597
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	4 cut(s)	146, 493, 541, 595
NlaIV	GGNNCC	5 cut(s)	167, 240, 316, 432, 433
NmeAIII	GCCGAG	1 cut(s)	634
NsiI	ATGCAT	1 cut(s)	593
OliI	CACNNNNGTG	1 cut(s)	572
PagI	TCATGA	1 cut(s)	142
PciSI	GCTCTTC	1 cut(s)	212
PctI	GAATGC	1 cut(s)	416
PfoI	TCCNGGA	1 cut(s)	310
PinAI	ACCGGT	1 cut(s)	389
PkrI	GCNGC	3 cut(s)	49, 69, 453
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
PpuMI	RGGWCCY	1 cut(s)	431
Psp5II	RGGWCCY	1 cut(s)	431
Psp6I	CCWGG	4 cut(s)	188, 310, 542, 615
PspFI	CCCAGC	1 cut(s)	234
PspGI	CCWGG	4 cut(s)	188, 310, 542, 615
PspN4I	GGNNCC	5 cut(s)	167, 240, 316, 432, 433
PspPI	GGNCC	2 cut(s)	308, 431
PspPPI	RGGWCCY	1 cut(s)	431
PstI	CTGCAG	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	165
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	572
SapI	GCTCTTC	1 cut(s)	212
SatI	GCNGC	3 cut(s)	48, 68, 452
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	2 cut(s)	308, 431
SbfI	CCTGCAGG	1 cut(s)	348
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	4 cut(s)	190, 312, 544, 617
SdaI	CCTGCAGG	1 cut(s)	348
SduI	GDGCHC	2 cut(s)	241, 397
SfaNI	GCATC	3 cut(s)	453, 517, 578
SfcI	CTRYAG	2 cut(s)	229, 344
SinI	GGWCC	2 cut(s)	308, 431
SmiMI	CAYNNNNRTG	1 cut(s)	572
Sse8387I	CCTGCAGG	1 cut(s)	348
Sse9I	AATT	3 cut(s)	8, 117, 199
SsiI	CCGC	2 cut(s)	29, 47
SspMI	CTAG	2 cut(s)	72, 114
StyD4I	CCNGG	4 cut(s)	188, 310, 542, 615
StyI	CCWWGG	2 cut(s)	98, 438
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	4 cut(s)	126, 427, 483, 519
TaqI	TCGA	1 cut(s)	253
TasI	AATT	3 cut(s)	8, 117, 199
TauI	GCSGC	1 cut(s)	50
TseI	GCWGC	2 cut(s)	67, 451
TspDTI	ATGAA	3 cut(s)	131, 209, 650
TspGWI	ACGGA	1 cut(s)	654
VneI	GTGCAC	1 cut(s)	393
VpaK11BI	GGWCC	2 cut(s)	308, 431
XapI	RAATTY	3 cut(s)	8, 117, 199
XbaI	TCTAGA	1 cut(s)	113
XspI	CTAG	2 cut(s)	72, 114
ZraI	GACGTC	1 cut(s)	481
Zsp2I	ATGCAT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.