Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002068

Physical Location & Seq

Genomic Coordinates Forward (+)

54247979 .. 54249043

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG337100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTCAGCCTCTCTGTGGCCTCTTGATGGCACCATTAGAATTCATGTTACTTGTGCACTAGTTTATGACAAAACATCAACAGGAAGGATTCACAAAGGATTGTGTTCAACCTGGATGAAGAATTCTGTGCCTTTGACAAAAAGTGATGATTGTAGTTGGGCACTCATTTTTGTTCAGCAATCAAACTTCATACTTCCCGTTGATACTAAAGTACCTGTTATCATGATTGGTCCTGGAACTGGATTTGCTCCTTTCAGGGGTTTCTTGCAGGTATTTATTGGCTGCCTAATATTCATCACTTTGTTCATCACCTTCATAAATCCCAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009698 GO:0009987 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

110

Amino Acids

12.23

Weight (kDa)

8.84

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30210 AT4G30210 AT4G30210
fragaria_vesca	FvH4_4g08180
malus_domestica	MD13G1253300.v1.1 MD16G1257600.v1.1
prunus_persica	Prupe.1G085400_v2.0.a1
pyrus_communis	pycom12480g00040 pycom13g22470
rosa_chinensis	RchiOBHm_Chr1g0334331 RchiOBHm_Chr4g0402381 RchiOBHm_Chr4g0402391 RchiOBHm_Chr4g0419591 RchiOBHm_Chr7g0226121
rosa_laevigata	RLG00000009089 RLG00000009093 RLG00000009097 RLG00000009098
rosa_multiflora	Rmu_co8074388.1_g000001 Rmu_sc0002660.1_g000001 Rmu_sc0023635.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022590 Rroxscaffold_5G00347040 Rroxscaffold_5G00347050
rosa_rugosa	Rorug03G0293000 Rorug04G0034500 Rorug04G0034500 Rorug04G0034600 Rorug04G0034700 Rorug04G0034800 Rorug04G0034900 Rorug04G0035000 Rorug05G0246500
rosa_samantha	Rh4AG112500 Rh4AG112600 Rh4BG105000 Rh4BG105100 Rh4CG004400 Rh4CG119300 Rh4CG119400 Rh4DG104000 Rh4DG104100 Rh5AG337100
rosa_wichuraiana	Rw4G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	259
AccB1I	GGYRCC	1 cut(s)	29
AcsI	RAATTY	2 cut(s)	39, 121
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	4 cut(s)	15, 26, 239, 257
AgsI	TTSAA	1 cut(s)	108
AhlI	ACTAGT	1 cut(s)	58
AjnI	CCWGG	2 cut(s)	110, 232
Alw21I	GWGCWC	1 cut(s)	58
Alw44I	GTGCAC	1 cut(s)	54
AoxI	GGCC	1 cut(s)	17
ApaLI	GTGCAC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	282
ApoI	RAATTY	2 cut(s)	39, 121
AspS9I	GGNCC	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	301
AvaII	GGWCC	1 cut(s)	230
BaeGI	GKGCMC	2 cut(s)	58, 163
BaeI	ACNNNNGTAYC	4 cut(s)	195, 195, 228, 228
BanI	GGYRCC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	1 cut(s)	20
BciT130I	CCWGG	2 cut(s)	112, 234
BcuI	ACTAGT	1 cut(s)	58
BfaI	CTAG	2 cut(s)	59, 331
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	284
Bme1390I	CCNGG	2 cut(s)	112, 234
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	2 cut(s)	112, 234
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 26, 239, 257
Bse1I	ACTGG	1 cut(s)	244
BseBI	CCWGG	2 cut(s)	112, 234
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	4 cut(s)	15, 26, 239, 257
BseNI	ACTGG	1 cut(s)	244
BseSI	GKGCMC	2 cut(s)	58, 163
BseXI	GCAGC	1 cut(s)	269
BshFI	GGCC	1 cut(s)	19
BshNI	GGYRCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	58
BslI	CCNNNNNNNGG	4 cut(s)	15, 26, 239, 257
BsnI	GGCC	1 cut(s)	19
Bsp1286I	GDGCHC	2 cut(s)	58, 163
BspANI	GGCC	1 cut(s)	19
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	31
BspMI	ACCTGC	1 cut(s)	259
BspT107I	GGYRCC	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	244
Bst2UI	CCWGG	2 cut(s)	112, 234
BstF5I	GGATG	1 cut(s)	120
BstNI	CCWGG	2 cut(s)	112, 234
BstSCI	CCNGG	2 cut(s)	110, 232
BstSLI	GKGCMC	2 cut(s)	58, 163
BstV1I	GCAGC	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	259
CciI	TCATGA	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	2 cut(s)	44, 223
CviJI	RGCY	3 cut(s)	8, 19, 282
CviKI_1	RGCY	3 cut(s)	8, 19, 282
CviQI	GTAC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	230
EcoRI	GAATTC	2 cut(s)	39, 121
EcoRII	CCWGG	2 cut(s)	110, 232
FaeI	CATG	2 cut(s)	47, 226
FaiI	YATR	5 cut(s)	45, 66, 191, 224, 317
FatI	CATG	2 cut(s)	43, 222
Fnu4HI	GCNGC	1 cut(s)	283
FokI	GGATG	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	283
FspBI	CTAG	2 cut(s)	59, 331
GluI	GCNGC	1 cut(s)	283
HaeIII	GGCC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	47, 226
HinfI	GANTC	1 cut(s)	88
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188III	TCNNGA	2 cut(s)	23, 223
Hpy8I	GTNNAC	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	78, 322
HpyCH4V	TGCA	2 cut(s)	56, 268
Hsp92II	CATG	2 cut(s)	47, 226
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	9 cut(s)	66, 97, 124, 219, 225, 228, 241, 246, 254
Lsp1109I	GCAGC	1 cut(s)	269
MaeI	CTAG	2 cut(s)	59, 331
MaeIII	GTNAC	1 cut(s)	46
MboII	GAAGA	1 cut(s)	130
MhlI	GDGCHC	2 cut(s)	58, 163
MluCI	AATT	3 cut(s)	39, 121, 325
MnlI	CCTC	2 cut(s)	19, 30
MspR9I	CCNGG	2 cut(s)	112, 234
MvaI	CCWGG	2 cut(s)	112, 234
NlaIII	CATG	2 cut(s)	47, 226
NlaIV	GGNNCC	1 cut(s)	31
PagI	TCATGA	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	284
Psp6I	CCWGG	2 cut(s)	110, 232
PspGI	CCWGG	2 cut(s)	110, 232
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	230
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SatI	GCNGC	1 cut(s)	283
Sau96I	GGNCC	1 cut(s)	230
ScrFI	CCNGG	2 cut(s)	112, 234
SduI	GDGCHC	2 cut(s)	58, 163
SetI	ASST	4 cut(s)	113, 217, 273, 314
SinI	GGWCC	1 cut(s)	230
SpeI	ACTAGT	1 cut(s)	58
Sse9I	AATT	3 cut(s)	39, 121, 325
SspI	AATATT	1 cut(s)	291
SspMI	CTAG	2 cut(s)	59, 331
StyD4I	CCNGG	2 cut(s)	110, 232
TasI	AATT	3 cut(s)	39, 121, 325
TfiI	GAWTC	1 cut(s)	88
TseI	GCWGC	1 cut(s)	282
TspDTI	ATGAA	6 cut(s)	32, 131, 178, 283, 295, 304
VneI	GTGCAC	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	2 cut(s)	39, 121
XspI	CTAG	2 cut(s)	59, 331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.