RchiOBHm_Chr4g0419591

belongs to the flavoprotein pyridine nucleotide cytochrome reductase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
45080245 .. 45082938
2694 bp
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UTR
Exon/CDS
Intron
PRQ38947

Sequence Viewer

Length: 282 bp
ATGGAGGAGAGGGTGGTTTTGAAATGGAGGAAGAATGAGGATGTTCTGTGGTTTGGGTTGTCACTGTTTCTGCGTTTTCCTCTTGCTTCGTCATTGAACGATGAAGGTGGAAACTTGCAGGGGAATAAACTAACTGGTCAAATCCGGGATGAGATTGGCAACTGTGCTTCTCTTATTTATCTGATGGCACCATCTAGAATTCATGTTACTTGTGCACTAGTTTGTGACAAAACATCAACAGGAAGGATTCACAAAGGCGTGTGTTCAACATGGATGAAGTGA

Protein Analysis

93

Amino Acids

10.47

Weight (kDa)

8.82

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 187
AcsI RAATTY 1 cut(s) 198
AgsI TTSAA 3 cut(s) 22, 97, 267
AhlI ACTAGT 1 cut(s) 217
Alw21I GWGCWC 1 cut(s) 217
Alw44I GTGCAC 1 cut(s) 213
ApaLI GTGCAC 1 cut(s) 213
ApoI RAATTY 1 cut(s) 198
AsuC2I CCSGG 1 cut(s) 146
BaeGI GKGCMC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 217
BccI CCATC 2 cut(s) 178, 199
BcnI CCSGG 1 cut(s) 146
BcuI ACTAGT 1 cut(s) 217
BfaI CTAG 2 cut(s) 195, 218
Bme1390I CCNGG 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 146
BpuMI CCSGG 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 139
BseGI GGATG 3 cut(s) 46, 154, 279
BseNI ACTGG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 217
BshNI GGYRCC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 217
BsiSI CCGG 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 189
BspT107I GGYRCC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 139
Bst4CI ACNGT 2 cut(s) 66, 164
BstF5I GGATG 3 cut(s) 46, 154, 279
BstSCI CCNGG 1 cut(s) 144
BstSLI GKGCMC 1 cut(s) 217
BtsCI GGATG 3 cut(s) 46, 154, 279
BtsIMutI CAGTG 1 cut(s) 62
CviAII CATG 2 cut(s) 203, 270
EcoRI GAATTC 1 cut(s) 198
FaeI CATG 2 cut(s) 206, 273
FaiI YATR 2 cut(s) 204, 271
FatI CATG 2 cut(s) 202, 269
FokI GGATG 2 cut(s) 53, 161
FspBI CTAG 2 cut(s) 195, 218
HapII CCGG 1 cut(s) 145
Hin1II CATG 2 cut(s) 206, 273
HinfI GANTC 1 cut(s) 247
HpaII CCGG 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 1 cut(s) 195
Hpy8I GTNNAC 1 cut(s) 215
HpyAV CCTTC 2 cut(s) 98, 237
HpyCH4III ACNGT 2 cut(s) 66, 164
HpyCH4V TGCA 2 cut(s) 118, 215
Hsp92II CATG 2 cut(s) 206, 273
LpnPI CCDG 4 cut(s) 104, 120, 158, 225
MaeI CTAG 2 cut(s) 195, 218
MaeIII GTNAC 3 cut(s) 60, 205, 224
MboII GAAGA 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 1 cut(s) 198
MnlI CCTC 4 cut(s) 3, 21, 31, 90
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 1 cut(s) 146
NciI CCSGG 1 cut(s) 146
NlaIII CATG 2 cut(s) 206, 273
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 2 cut(s) 60, 224
PfeI GAWTC 1 cut(s) 247
PfoI TCCNGGA 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 189
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 1 cut(s) 217
SetI ASST 1 cut(s) 109
SpeI ACTAGT 1 cut(s) 217
Sse9I AATT 1 cut(s) 198
SspMI CTAG 2 cut(s) 195, 218
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 2 cut(s) 66, 164
TasI AATT 1 cut(s) 198
TfiI GAWTC 1 cut(s) 247
TscAI CASTG 1 cut(s) 69
TseFI GTSAC 2 cut(s) 60, 224
Tsp45I GTSAC 2 cut(s) 60, 224
TspDTI ATGAA 2 cut(s) 117, 191
TspRI CASTG 1 cut(s) 69
VneI GTGCAC 1 cut(s) 213
XapI RAATTY 1 cut(s) 198
XbaI TCTAGA 1 cut(s) 194
XspI CTAG 2 cut(s) 195, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.