Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002068

Physical Location & Seq

Genomic Coordinates Reverse (-)

5194843 .. 5196874

Gene Structure 2032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0034900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGCTCCGTCTTCTCCAGCCTCCGCCTCCTCCAGCCTTCGTCTTCTCCAGCATCGATGTGGTCTCGGTCTCCAGCATCGATGTGGTCTCAGTCTCCAGCATCGATGCCTCTTCCGCCTCCTCCAGCGTCGTGCCGCCTCCGCCTTCTCCAGCGTCGATGTCGCCTTCTCTAGCTGAAGCTAGTGATATTTCGGATGAGAAACCATGCAAGACTGGTTCGAAGCCACCGGAGCCGCTCAAGGACTATATTCATGTACGAGCAAGAAGGGGTCAAACCACTGACAGCCATAGTCTAGCTGAAGATCGCCGCCATCTCCAAACCTCACAGCTAAACACTCGGCCTCCGGCCCTCCTCCTCCAGTCCGAACCATTCATCGACATTTGCTTCTTCGATACATGTTATTCAAGCATGGACGCAAGCATAGAAGCAAAAGCAAGGATGGTGGCGGATAAGCGATTTGTTTTCTGTAGTGTATGGCAGAAAGTTGTGGACAAGAAACCCTACCCGAGATGCTACAAGGGCTTCCCTGTCAGATTAAGGTTCTTGACCCAACTTGCAGTCTTCAAATTTTTTGGTGGTAGGGAATTTGATAGTAAATATACTTTACCAGAGCTCTTATCTGAATCAAAGGTTTGGATCAACCCTTGTAACAACAATGAGGTTGAAGAGGCCGCCATGGTGCGTGAGAAACTTAGCGAGTTTGGTATCCTAGAGGAACACCAGTCGGCTATCATTCAAAGAATATTCAAGGCAGTTCAAGTGGCCACCGCCCTCCCCCAACCCCTGATGGGCATAGATGTTGCCATAAGGGACGTGAAGGTGTTGATATCTGGCAGCACTGCTGACCTTGATGATTACGTTGATTGGGTTATAACGGACTCCTTTAAAAAGATTGTTGATCGTGGTCGGCGCTGCTGCAACAGGATGTCAGAATGTCCAATTTGCATGGAGGACGACATCTTCCTCCACCTTGATGATGAAAATAAATTGGTTACTAGTTTTGCCCTGCTTACATTATTTTCACGGACATTGCATTGCCAAGTGGCTGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009698 GO:0009987 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

351

Amino Acids

39.21

Weight (kDa)

5.77

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30210 AT4G30210 AT4G30210
fragaria_vesca	FvH4_4g08180
malus_domestica	MD13G1253300.v1.1 MD16G1257600.v1.1
prunus_persica	Prupe.1G085400_v2.0.a1
pyrus_communis	pycom12480g00040 pycom13g22470
rosa_chinensis	RchiOBHm_Chr1g0334331 RchiOBHm_Chr4g0402381 RchiOBHm_Chr4g0402391 RchiOBHm_Chr4g0419591 RchiOBHm_Chr7g0226121
rosa_laevigata	RLG00000009089 RLG00000009093 RLG00000009097 RLG00000009098
rosa_multiflora	Rmu_co8074388.1_g000001 Rmu_sc0002660.1_g000001 Rmu_sc0023635.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022590 Rroxscaffold_5G00347040 Rroxscaffold_5G00347050
rosa_rugosa	Rorug03G0293000 Rorug04G0034500 Rorug04G0034500 Rorug04G0034600 Rorug04G0034700 Rorug04G0034800 Rorug04G0034900 Rorug04G0035000 Rorug05G0246500
rosa_samantha	Rh4AG112500 Rh4AG112600 Rh4BG105000 Rh4BG105100 Rh4CG004400 Rh4CG119300 Rh4CG119400 Rh4DG104000 Rh4DG104100 Rh5AG337100
rosa_wichuraiana	Rw4G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	872
AccBSI	CCGCTC	1 cut(s)	235
AciI	CCGC	9 cut(s)	23, 114, 134, 140, 233, 307, 446, 672, 768
AclWI	GGATC	1 cut(s)	644
AcoI	YGGCCR	1 cut(s)	762
AcsI	RAATTY	2 cut(s)	566, 584
AcuI	CTGAAG	2 cut(s)	195, 318
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	788
AflIII	ACRYGT	1 cut(s)	395
AgsI	TTSAA	6 cut(s)	405, 565, 665, 737, 748, 758
AhlI	ACTAGT	1 cut(s)	995
AjiI	CACGTC	1 cut(s)	814
AluBI	AGCT	5 cut(s)	173, 179, 296, 328, 613
AluI	AGCT	5 cut(s)	173, 179, 296, 328, 613
Alw21I	GWGCWC	1 cut(s)	615
Alw26I	GTCTC	4 cut(s)	67, 73, 91, 97
AlwI	GGATC	1 cut(s)	644
Ama87I	CYCGRG	1 cut(s)	505
AoxI	GGCC	4 cut(s)	338, 345, 669, 762
ApeKI	GCWGC	3 cut(s)	834, 912, 915
ApoI	RAATTY	2 cut(s)	566, 584
AspLEI	GCGC	1 cut(s)	912
AspS9I	GGNCC	1 cut(s)	346
AsuII	TTCGAA	1 cut(s)	218
AvaI	CYCGRG	1 cut(s)	505
BalI	TGGCCA	1 cut(s)	764
BanII	GRGCYC	1 cut(s)	615
BbsI	GAAGAC	3 cut(s)	2, 34, 553
Bbv12I	GWGCWC	1 cut(s)	615
BbvI	GCAGC	3 cut(s)	846, 899, 902
BccI	CCATC	3 cut(s)	318, 433, 781
BciVI	GTATCC	1 cut(s)	716
BcoDI	GTCTC	4 cut(s)	67, 73, 91, 97
BcuI	ACTAGT	1 cut(s)	995
BfaI	CTAG	5 cut(s)	170, 180, 293, 710, 996
BfmI	CTRYAG	1 cut(s)	466
BfoI	RGCGCY	1 cut(s)	913
BfuI	GTATCC	1 cut(s)	716
BisI	GCNGC	7 cut(s)	134, 233, 307, 672, 835, 913, 916
BlsI	GCNGC	7 cut(s)	135, 234, 308, 673, 836, 914, 917
BmeT110I	CYCGRG	1 cut(s)	505
BmgBI	CACGTC	1 cut(s)	814
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	1 cut(s)	231
BmsI	GCATC	5 cut(s)	60, 84, 94, 108, 500
BpiI	GAAGAC	3 cut(s)	2, 34, 553
BpmI	CTGGAG	7 cut(s)	15, 31, 55, 79, 106, 132, 341
Bpu14I	TTCGAA	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	221
Bsa29I	ATCGAT	3 cut(s)	54, 78, 102
BsaI	GGTCTC	3 cut(s)	67, 73, 91
BsaJI	CCNNGG	1 cut(s)	675
BsaWI	WCCGGW	1 cut(s)	226
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	788
Bse1I	ACTGG	3 cut(s)	217, 358, 721
Bse3DI	GCAATG	2 cut(s)	1028, 1033
BseCI	ATCGAT	3 cut(s)	54, 78, 102
BseDI	CCNNGG	1 cut(s)	675
BseGI	GGATG	3 cut(s)	199, 444, 930
BseLI	CCNNNNNNNGG	1 cut(s)	788
BseMI	GCAATG	2 cut(s)	1028, 1033
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	3 cut(s)	217, 358, 721
BseRI	GAGGAG	4 cut(s)	18, 109, 341, 344
BseXI	GCAGC	3 cut(s)	846, 899, 902
BshFI	GGCC	4 cut(s)	340, 347, 671, 764
BshVI	ATCGAT	3 cut(s)	54, 78, 102
BsiHKAI	GWGCWC	1 cut(s)	615
BsiHKCI	CYCGRG	1 cut(s)	505
BsiSI	CCGG	2 cut(s)	227, 344
BslFI	GGGAC	1 cut(s)	824
BslI	CCNNNNNNNGG	1 cut(s)	788
BsmAI	GTCTC	4 cut(s)	67, 73, 91, 97
BsmFI	GGGAC	1 cut(s)	824
BsnI	GGCC	4 cut(s)	340, 347, 671, 764
Bso31I	GGTCTC	3 cut(s)	67, 73, 91
BsoBI	CYCGRG	1 cut(s)	505
Bsp119I	TTCGAA	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	615
Bsp143I	GATC	3 cut(s)	301, 636, 898
Bsp19I	CCATGG	1 cut(s)	675
BspACI	CCGC	9 cut(s)	23, 114, 134, 140, 233, 307, 446, 672, 768
BspANI	GGCC	4 cut(s)	340, 347, 671, 764
BspCNI	CTCAG	1 cut(s)	101
BspDI	ATCGAT	3 cut(s)	54, 78, 102
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	1 cut(s)	644
BspT104I	TTCGAA	1 cut(s)	218
BspTNI	GGTCTC	3 cut(s)	67, 73, 91
BsrBI	CCGCTC	1 cut(s)	235
BsrDI	GCAATG	2 cut(s)	1028, 1033
BsrI	ACTGG	3 cut(s)	217, 358, 721
BssECI	CCNNGG	1 cut(s)	675
BssMI	GATC	3 cut(s)	301, 636, 898
BssT1I	CCWWGG	1 cut(s)	675
Bst6I	CTCTTC	2 cut(s)	115, 660
BstBI	TTCGAA	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	2 cut(s)	88, 692
BstDSI	CCRYGG	1 cut(s)	675
BstF5I	GGATG	3 cut(s)	199, 444, 930
BstH2I	RGCGCY	1 cut(s)	913
BstHHI	GCGC	1 cut(s)	912
BstKTI	GATC	3 cut(s)	304, 639, 901
BstMAI	GTCTC	4 cut(s)	67, 73, 91, 97
BstMBI	GATC	3 cut(s)	301, 636, 898
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 139, 229, 519
BstNSI	RCATGY	1 cut(s)	399
BstSFI	CTRYAG	1 cut(s)	466
BstV1I	GCAGC	3 cut(s)	846, 899, 902
BstV2I	GAAGAC	3 cut(s)	2, 34, 553
BstXI	CCANNNNNNTGG	1 cut(s)	1046
Bsu15I	ATCGAT	3 cut(s)	54, 78, 102
BsuI	GTATCC	1 cut(s)	716
BsuRI	GGCC	4 cut(s)	340, 347, 671, 764
BsuTUI	ATCGAT	3 cut(s)	54, 78, 102
BtgI	CCRYGG	1 cut(s)	675
BtrI	CACGTC	1 cut(s)	814
BtsCI	GGATG	3 cut(s)	199, 444, 930
BtsI	GCAGTG	1 cut(s)	837
BtsIMutI	CAGTG	2 cut(s)	276, 837
Cac8I	GCNNGC	1 cut(s)	418
CfoI	GCGC	1 cut(s)	912
Cfr13I	GGNCC	1 cut(s)	346
ClaI	ATCGAT	3 cut(s)	54, 78, 102
CseI	GACGC	3 cut(s)	115, 141, 422
Csp6I	GTAC	1 cut(s)	254
CspCI	CAANNNNNGTGG	2 cut(s)	423, 458
CviAII	CATG	6 cut(s)	204, 251, 396, 409, 676, 946
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	2 cut(s)	88, 692
DpnI	GATC	3 cut(s)	303, 638, 900
DpnII	GATC	3 cut(s)	301, 636, 898
DraI	TTTAAA	1 cut(s)	886
EaeI	YGGCCR	1 cut(s)	762
Eam1104I	CTCTTC	2 cut(s)	115, 660
EarI	CTCTTC	2 cut(s)	115, 660
EciI	GGCGGA	4 cut(s)	12, 103, 129, 461
Ecl136II	GAGCTC	1 cut(s)	613
Eco130I	CCWWGG	1 cut(s)	675
Eco24I	GRGCYC	1 cut(s)	615
Eco31I	GGTCTC	3 cut(s)	67, 73, 91
Eco32I	GATATC	1 cut(s)	828
Eco53kI	GAGCTC	1 cut(s)	613
Eco57I	CTGAAG	2 cut(s)	195, 318
Eco88I	CYCGRG	1 cut(s)	505
EcoICRI	GAGCTC	1 cut(s)	613
EcoRV	GATATC	1 cut(s)	828
EcoT14I	CCWWGG	1 cut(s)	675
EcoT38I	GRGCYC	1 cut(s)	615
ErhI	CCWWGG	1 cut(s)	675
FaeI	CATG	6 cut(s)	207, 254, 399, 412, 679, 949
FaqI	GGGAC	1 cut(s)	824
FatI	CATG	6 cut(s)	203, 250, 395, 408, 675, 945
Fnu4HI	GCNGC	7 cut(s)	134, 233, 307, 672, 835, 913, 916
FokI	GGATG	3 cut(s)	206, 451, 937
FriOI	GRGCYC	1 cut(s)	615
Fsp4HI	GCNGC	7 cut(s)	134, 233, 307, 672, 835, 913, 916
FspBI	CTAG	5 cut(s)	170, 180, 293, 710, 996
GlaI	GCGC	1 cut(s)	911
GluI	GCNGC	7 cut(s)	134, 233, 307, 672, 835, 913, 916
GsuI	CTGGAG	7 cut(s)	15, 31, 55, 79, 106, 132, 341
HaeII	RGCGCY	1 cut(s)	913
HaeIII	GGCC	4 cut(s)	340, 347, 671, 764
HapII	CCGG	2 cut(s)	227, 344
HgaI	GACGC	3 cut(s)	115, 141, 422
HhaI	GCGC	1 cut(s)	912
Hin1II	CATG	6 cut(s)	207, 254, 399, 412, 679, 949
Hin6I	GCGC	1 cut(s)	910
HinP1I	GCGC	1 cut(s)	910
HinfI	GANTC	2 cut(s)	623, 878
HpaII	CCGG	2 cut(s)	227, 344
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	5 cut(s)	193, 364, 533, 622, 931
Hpy188III	TCNNGA	1 cut(s)	544
Hpy8I	GTNNAC	1 cut(s)	490
Hpy99I	CGWCG	2 cut(s)	131, 157
HpyAV	CCTTC	5 cut(s)	46, 153, 174, 258, 811
HpyCH4IV	ACGT	2 cut(s)	813, 858
HpyCH4V	TGCA	5 cut(s)	207, 557, 918, 945, 1033
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 139, 229, 519
HpyF3I	CTNAG	2 cut(s)	88, 692
HpySE526I	ACGT	2 cut(s)	813, 858
Hsp92II	CATG	6 cut(s)	207, 254, 399, 412, 679, 949
HspAI	GCGC	1 cut(s)	910
Kzo9I	GATC	3 cut(s)	301, 636, 898
LmnI	GCTCC	2 cut(s)	9, 229
Lsp1109I	GCAGC	3 cut(s)	846, 899, 902
LweI	GCATC	5 cut(s)	60, 84, 94, 108, 500
MaeI	CTAG	5 cut(s)	170, 180, 293, 710, 996
MaeII	ACGT	2 cut(s)	813, 858
MaeIII	GTNAC	2 cut(s)	647, 991
MalI	GATC	3 cut(s)	303, 638, 900
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	3 cut(s)	301, 636, 898
MboII	GAAGA	7 cut(s)	34, 102, 311, 379, 553, 677, 952
MhlI	GDGCHC	1 cut(s)	615
MlsI	TGGCCA	1 cut(s)	764
MluCI	AATT	4 cut(s)	566, 584, 939, 986
MluNI	TGGCCA	1 cut(s)	764
MlyI	GAGTC	1 cut(s)	872
Mox20I	TGGCCA	1 cut(s)	764
MscI	TGGCCA	1 cut(s)	764
MseI	TTAA	2 cut(s)	536, 885
MslI	CAYNNNNRTG	3 cut(s)	56, 80, 972
Msp20I	TGGCCA	1 cut(s)	764
MspI	CCGG	2 cut(s)	227, 344
MwoI	GCNNNNNNNGC	4 cut(s)	113, 139, 229, 519
NcoI	CCATGG	1 cut(s)	675
NdeII	GATC	3 cut(s)	301, 636, 898
NlaIII	CATG	6 cut(s)	207, 254, 399, 412, 679, 949
NlaIV	GGNNCC	1 cut(s)	231
NmeAIII	GCCGAG	1 cut(s)	316
NspI	RCATGY	1 cut(s)	399
NspV	TTCGAA	1 cut(s)	218
PciI	ACATGT	1 cut(s)	395
PfeI	GAWTC	1 cut(s)	623
PkrI	GCNGC	7 cut(s)	135, 234, 308, 673, 836, 914, 917
PleI	GAGTC	1 cut(s)	872
PpsI	GAGTC	1 cut(s)	872
PscI	ACATGT	1 cut(s)	395
PsiI	TTATAA	1 cut(s)	872
Psp124BI	GAGCTC	1 cut(s)	615
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	346
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
RseI	CAYNNNNRTG	3 cut(s)	56, 80, 972
SacI	GAGCTC	1 cut(s)	615
SaqAI	TTAA	2 cut(s)	536, 885
SatI	GCNGC	7 cut(s)	134, 233, 307, 672, 835, 913, 916
Sau3AI	GATC	3 cut(s)	301, 636, 898
Sau96I	GGNCC	1 cut(s)	346
SchI	GAGTC	1 cut(s)	872
SduI	GDGCHC	1 cut(s)	615
SfaNI	GCATC	5 cut(s)	60, 84, 94, 108, 500
SfcI	CTRYAG	1 cut(s)	466
SfuI	TTCGAA	1 cut(s)	218
SmiMI	CAYNNNNRTG	3 cut(s)	56, 80, 972
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SpeI	ACTAGT	1 cut(s)	995
Sse9I	AATT	4 cut(s)	566, 584, 939, 986
SsiI	CCGC	9 cut(s)	23, 114, 134, 140, 233, 307, 446, 672, 768
SspI	AATATT	1 cut(s)	744
SspMI	CTAG	5 cut(s)	170, 180, 293, 710, 996
SstI	GAGCTC	1 cut(s)	615
StyI	CCWWGG	1 cut(s)	675
TaiI	ACGT	2 cut(s)	816, 861
TaqI	TCGA	7 cut(s)	54, 78, 102, 155, 218, 375, 390
TaqII	GACCGA	1 cut(s)	55
TasI	AATT	4 cut(s)	566, 584, 939, 986
TauI	GCSGC	4 cut(s)	136, 235, 309, 674
TfiI	GAWTC	1 cut(s)	623
Tru1I	TTAA	2 cut(s)	536, 885
Tru9I	TTAA	2 cut(s)	536, 885
TscAI	CASTG	2 cut(s)	283, 844
TseI	GCWGC	3 cut(s)	834, 912, 915
TspDTI	ATGAA	3 cut(s)	239, 361, 993
TspGWI	ACGGA	2 cut(s)	890, 1039
TspRI	CASTG	2 cut(s)	283, 844
XapI	RAATTY	2 cut(s)	566, 584
XceI	RCATGY	1 cut(s)	399
XcmI	CCANNNNNNNNNTGG	2 cut(s)	55, 79
XspI	CTAG	5 cut(s)	170, 180, 293, 710, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.